Wall clock time and date at job start Thu Apr 9 2020 12:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34232 * 116.99955 * 2 1 4 4 O 1.20826 * 120.00035 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99834 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.47058 * 48.72170 * 5 3 2 7 7 C 1.53003 * 109.47400 * 288.71497 * 5 3 2 8 8 N 1.46905 * 109.47070 * 168.71475 * 5 3 2 9 9 C 1.46899 * 111.00148 * 178.42452 * 8 5 3 10 10 C 1.50704 * 109.46973 * 197.61423 * 9 8 5 11 11 H 1.08006 * 119.99741 * 5.98131 * 10 9 8 12 12 C 1.37871 * 119.99987 * 185.96829 * 10 9 8 13 13 N 1.31519 * 120.00376 * 179.97438 * 12 10 9 14 14 Si 1.86804 * 120.00125 * 0.02562 * 12 10 9 15 15 H 1.48499 * 109.47229 * 89.99158 * 14 12 10 16 16 H 1.48501 * 109.47130 * 209.99758 * 14 12 10 17 17 H 1.48504 * 109.46800 * 329.99669 * 14 12 10 18 18 C 1.46904 * 111.00037 * 302.38293 * 8 5 3 19 19 C 1.53774 * 113.60966 * 254.67353 * 18 8 5 20 20 C 1.53786 * 87.08219 * 220.01617 * 19 18 8 21 21 C 1.53779 * 113.61474 * 157.17739 * 18 8 5 22 22 H 1.09004 * 109.47324 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47220 * 299.99392 * 1 2 3 24 24 H 1.09000 * 109.47501 * 59.99910 * 1 2 3 25 25 H 1.09001 * 109.46970 * 60.00469 * 7 5 3 26 26 H 1.08998 * 109.46831 * 179.97438 * 7 5 3 27 27 H 1.08993 * 109.47164 * 300.00028 * 7 5 3 28 28 H 1.08999 * 109.47037 * 317.61171 * 9 8 5 29 29 H 1.09000 * 109.47108 * 77.61760 * 9 8 5 30 30 H 0.97000 * 120.00193 * 180.02562 * 13 12 10 31 31 H 1.09001 * 112.84654 * 25.97941 * 18 8 5 32 32 H 1.09003 * 113.61820 * 334.56480 * 19 18 8 33 33 H 1.09000 * 113.61523 * 105.47410 * 19 18 8 34 34 H 1.08993 * 113.61712 * 270.88805 * 20 19 18 35 35 H 1.09002 * 113.61244 * 139.98123 * 20 19 18 36 36 H 1.08998 * 113.61249 * 254.52899 * 21 18 8 37 37 H 1.08999 * 113.61214 * 25.34538 * 21 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5662 1.2749 0.0006 6 1 3.9648 0.6166 -0.7715 7 6 4.0993 0.8396 1.3671 8 7 3.9843 2.6568 -0.2706 9 6 5.4478 2.7796 -0.2408 10 6 5.8272 4.2301 -0.0882 11 1 5.0617 4.9740 0.0767 12 6 7.1514 4.6074 -0.1588 13 7 7.4825 5.8733 -0.0262 14 14 8.4753 3.3208 -0.4444 15 1 8.7013 3.1583 -1.9030 16 1 9.7370 3.7559 0.2067 17 1 8.0398 2.0252 0.1363 18 6 3.4423 3.1290 -1.5517 19 6 4.4891 3.1960 -2.6761 20 6 3.8246 4.5135 -3.1093 21 6 3.3493 4.6606 -1.6542 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 3.7892 -0.1858 1.5683 26 1 5.1878 0.8962 1.3673 27 1 3.7007 1.4978 2.1390 28 1 5.8431 2.2102 0.6005 29 1 5.8640 2.3910 -1.1702 30 1 8.4142 6.1387 -0.0762 31 1 2.5243 2.6157 -1.8379 32 1 5.5102 3.3199 -2.3153 33 1 4.3928 2.3963 -3.4106 34 1 3.0117 4.3786 -3.8227 35 1 4.5355 5.2807 -3.4161 36 1 2.3327 5.0433 -1.5636 37 1 4.0577 5.1849 -1.0129 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332075815.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:49 Heat of formation + Delta-G solvation = -52.186622 kcal Electronic energy + Delta-G solvation = -18627.683677 eV Core-core repulsion = 15792.480775 eV Total energy + Delta-G solvation = -2835.202902 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.81567 -40.30324 -37.50848 -36.45567 -34.67313 -31.89237 -29.52489 -28.65551 -26.57638 -25.40718 -25.03512 -22.84641 -21.13394 -20.00086 -19.04155 -18.56553 -17.72815 -17.40789 -16.86025 -16.34532 -16.09044 -15.40100 -15.01372 -14.66462 -14.31471 -14.11326 -13.72976 -13.51925 -13.15963 -13.09077 -12.82166 -12.78002 -12.67528 -12.42471 -12.22575 -11.82429 -11.74438 -11.60258 -11.23288 -11.18377 -11.02574 -10.76630 -10.60337 -8.94219 -8.16052 -6.16925 1.18659 1.39041 1.41009 1.50119 1.66392 2.40927 3.07225 3.16579 3.82262 3.87349 3.94586 4.06216 4.08590 4.15154 4.27822 4.34032 4.35386 4.50938 4.69075 4.72832 4.81685 4.86132 4.97167 5.04555 5.07792 5.14862 5.22309 5.32612 5.36193 5.49005 5.61492 5.76232 6.10745 6.36541 6.67127 6.83270 6.92154 7.43399 8.99032 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.027791 B = 0.008315 C = 0.007137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.292578 B = 3366.620102 C = 3922.037210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.361 6.361 3 C 0.468 3.532 4 O -0.517 6.517 5 C 0.083 3.917 6 H 0.086 0.914 7 C -0.137 4.137 8 N -0.521 5.521 9 C 0.161 3.839 10 C -0.498 4.498 11 H 0.053 0.947 12 C 0.012 3.988 13 N -0.949 5.949 14 Si 0.930 3.070 15 H -0.270 1.270 16 H -0.290 1.290 17 H -0.242 1.242 18 C 0.079 3.921 19 C -0.173 4.173 20 C -0.127 4.127 21 C -0.139 4.139 22 H 0.136 0.864 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.095 0.905 26 H 0.077 0.923 27 H 0.055 0.945 28 H 0.042 0.958 29 H 0.012 0.988 30 H 0.263 0.737 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.054 0.946 36 H 0.047 0.953 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.397 -14.808 -2.789 17.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.277 6.277 3 C 0.311 3.689 4 O -0.404 6.404 5 C -0.026 4.026 6 H 0.103 0.897 7 C -0.194 4.194 8 N -0.246 5.246 9 C 0.036 3.964 10 C -0.536 4.536 11 H 0.071 0.929 12 C -0.185 4.185 13 N -0.590 5.590 14 Si 0.754 3.246 15 H -0.195 1.195 16 H -0.216 1.216 17 H -0.165 1.165 18 C -0.029 4.029 19 C -0.212 4.212 20 C -0.165 4.165 21 C -0.177 4.177 22 H 0.154 0.846 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.114 0.886 26 H 0.096 0.904 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.030 0.970 30 H 0.072 0.928 31 H 0.103 0.897 32 H 0.108 0.892 33 H 0.090 0.910 34 H 0.109 0.891 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.701 -14.138 -2.386 17.311 hybrid contribution 0.802 -0.054 -0.608 1.008 sum -8.899 -14.192 -2.995 17.017 Atomic orbital electron populations 1.23540 0.74851 1.05734 1.02327 1.86488 1.24910 1.32334 1.83963 1.23801 0.91996 0.81389 0.71719 1.90664 1.67308 1.37322 1.45136 1.21353 0.87113 0.92426 1.01754 0.89661 1.21858 1.02426 1.02219 0.92946 1.61777 1.12452 1.17476 1.32856 1.20358 0.83249 0.96528 0.96282 1.21323 0.92505 0.92738 1.47005 0.92934 1.25685 1.00684 0.96858 0.95223 1.70045 1.18273 1.17795 1.52914 0.85969 0.78752 0.80894 0.78958 1.19521 1.21581 1.16490 1.22984 0.96343 0.96618 0.86992 1.23651 1.01021 0.98105 0.98402 1.22570 0.99971 0.97645 0.96336 1.23300 1.00247 0.96835 0.97344 0.84565 0.92251 0.92267 0.88590 0.90444 0.92615 0.94007 0.97032 0.92828 0.89668 0.89215 0.90991 0.89069 0.92706 0.93377 0.89646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.56 113.37 1.20 1.72 16 2 O -0.36 -9.16 10.57 -51.44 -0.54 -9.70 16 3 C 0.47 15.04 6.28 71.23 0.45 15.49 16 4 O -0.52 -19.95 14.54 21.96 0.32 -19.63 16 5 C 0.08 2.71 2.58 44.17 0.11 2.82 16 6 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 7 C -0.14 -3.90 8.96 71.98 0.65 -3.25 16 8 N -0.52 -21.46 4.18 -851.70 -3.56 -25.02 16 9 C 0.16 7.21 3.22 85.56 0.28 7.49 16 10 C -0.50 -27.21 7.52 25.60 0.19 -27.02 16 11 H 0.05 3.28 5.56 -2.91 -0.02 3.27 16 12 C 0.01 0.68 5.47 84.65 0.46 1.15 16 13 N -0.95 -58.05 13.96 21.45 0.30 -57.76 16 14 Si 0.93 41.94 27.36 68.60 1.88 43.82 16 15 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 16 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 17 H -0.24 -9.80 6.72 99.48 0.67 -9.14 16 18 C 0.08 3.14 3.11 45.44 0.14 3.28 16 19 C -0.17 -6.53 6.69 31.12 0.21 -6.32 16 20 C -0.13 -4.69 8.08 31.12 0.25 -4.44 16 21 C -0.14 -5.99 7.49 31.12 0.23 -5.76 16 22 H 0.14 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.06 1.13 8.13 -2.39 -0.02 1.11 16 24 H 0.06 1.12 8.13 -2.39 -0.02 1.10 16 25 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.08 2.25 6.04 -2.39 -0.01 2.23 16 27 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.04 1.81 4.98 -2.39 -0.01 1.80 16 29 H 0.01 0.53 4.64 -2.39 -0.01 0.52 16 30 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 31 H 0.09 3.20 6.06 -2.39 -0.01 3.19 16 32 H 0.09 3.93 4.67 -2.39 -0.01 3.91 16 33 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 35 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.09 4.44 4.43 -2.39 -0.01 4.43 16 Total: -1.00 -66.79 287.58 3.59 -63.20 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: 1.03 Total: 19.95 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: 4.17 Total: -14.86 kcal Atomic # 7 Polarization: -79.52 SS G_CDS: -3.26 Total: -82.78 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: -0.22 Total: -29.33 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 1.88 Total: 43.82 kcal Total: -66.79 3.59 -63.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332075815.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.016 kcal (2) G-P(sol) polarization free energy of solvation -66.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds