Wall clock time and date at job start Thu Apr 9 2020 12:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46903 * 2 1 4 4 C 1.50700 * 109.46848 * 119.99689 * 2 1 3 5 5 H 1.07997 * 120.00272 * 120.00385 * 4 2 1 6 6 C 1.37881 * 119.99885 * 300.00211 * 4 2 1 7 7 N 1.31509 * 120.00345 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99885 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46911 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47065 * 120.00028 * 8 6 4 11 11 H 1.48492 * 109.46996 * 240.00152 * 8 6 4 12 12 N 1.46493 * 109.47638 * 239.99559 * 2 1 3 13 13 C 1.34784 * 119.99864 * 84.99998 * 12 2 1 14 14 O 1.21283 * 119.99649 * 359.72839 * 13 12 2 15 15 C 1.50694 * 119.99988 * 179.72721 * 13 12 2 16 16 C 1.52997 * 109.52262 * 299.87493 * 15 13 12 17 17 C 1.53179 * 109.52158 * 179.68525 * 15 13 12 18 18 C 1.53180 * 109.03628 * 297.07511 * 17 15 13 19 19 C 1.53089 * 109.16399 * 303.01606 * 18 17 15 20 20 O 1.42904 * 109.41267 * 57.61032 * 19 18 17 21 21 C 1.42910 * 114.09972 * 298.84280 * 20 19 18 22 22 H 1.09003 * 109.46903 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47399 * 300.00132 * 1 2 3 24 24 H 1.09003 * 109.46886 * 60.00613 * 1 2 3 25 25 H 0.96995 * 120.00482 * 179.97438 * 7 6 4 26 26 H 0.97000 * 120.00740 * 264.72691 * 12 2 1 27 27 H 1.09003 * 109.47538 * 60.00031 * 16 15 13 28 28 H 1.08999 * 109.47180 * 180.02562 * 16 15 13 29 29 H 1.09000 * 109.46941 * 300.00059 * 16 15 13 30 30 H 1.08998 * 109.54085 * 56.94263 * 17 15 13 31 31 H 1.08998 * 109.54377 * 177.20510 * 17 15 13 32 32 H 1.08998 * 109.51934 * 183.11327 * 18 17 15 33 33 H 1.08993 * 109.52374 * 62.92698 * 18 17 15 34 34 H 1.09004 * 109.48292 * 297.63179 * 19 18 17 35 35 H 1.08994 * 109.48358 * 177.58906 * 19 18 17 36 36 H 1.09001 * 109.47563 * 301.17706 * 21 20 19 37 37 H 1.08998 * 109.47880 * 181.14328 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1316 6 6 1.6991 -0.2392 2.4828 7 7 0.9434 0.8303 2.6034 8 14 2.3223 -1.1193 4.0081 9 1 3.1482 -2.2854 3.6040 10 1 3.1470 -0.1855 4.8162 11 1 1.1676 -1.5864 4.8165 12 7 2.0184 -0.6906 -1.1960 13 6 2.1472 -0.0183 -2.3571 14 8 1.8540 1.1572 -2.4128 15 6 2.6555 -0.7272 -3.5859 16 6 4.0609 -1.2695 -3.3187 17 6 2.6988 0.2537 -4.7616 18 6 1.2754 0.7297 -5.0679 19 6 0.3906 -0.4855 -5.3576 20 8 0.4192 -1.3718 -4.2369 21 6 1.7173 -1.8862 -3.9327 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 0.7087 1.1615 3.4843 26 1 2.2530 -1.6308 -1.1515 27 1 4.0277 -1.9694 -2.4837 28 1 4.4279 -1.7817 -4.2081 29 1 4.7287 -0.4435 -3.0740 30 1 3.3210 1.1094 -4.4997 31 1 3.1129 -0.2453 -5.6377 32 1 1.2901 1.3854 -5.9385 33 1 0.8799 1.2719 -4.2091 34 1 0.7632 -1.0043 -6.2408 35 1 -0.6332 -0.1559 -5.5342 36 1 2.1072 -2.4232 -4.7974 37 1 1.6492 -2.5655 -3.0831 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334364854.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:56 Heat of formation + Delta-G solvation = -100.728658 kcal Electronic energy + Delta-G solvation = -18567.391791 eV Core-core repulsion = 15730.083948 eV Total energy + Delta-G solvation = -2837.307843 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.30527 -37.72579 -34.86987 -34.12173 -32.63429 -31.62353 -28.65255 -26.85984 -25.21394 -24.93734 -23.22041 -21.65767 -20.09370 -18.90640 -17.01042 -16.01981 -15.92437 -15.39179 -15.13165 -14.76268 -14.33488 -14.00146 -13.68260 -13.21827 -12.55917 -12.47322 -12.28970 -12.04043 -11.86350 -11.83624 -11.50994 -11.05359 -10.98607 -10.81921 -10.64647 -10.44522 -10.27736 -10.24264 -10.17930 -9.39298 -8.98046 -8.70709 -8.48404 -7.79976 -6.08760 -4.17807 3.25309 3.32875 3.35527 3.44739 3.99785 4.17742 4.40534 4.69942 4.94438 4.97449 5.17247 5.23155 5.28897 5.40019 5.51893 5.53055 5.66613 5.73237 5.80759 5.93385 6.00664 6.09558 6.25018 6.33495 6.67796 6.92099 7.08883 7.24029 7.30248 7.55451 7.63980 7.75462 7.98312 8.21088 8.75182 8.83801 9.22576 9.50166 10.97214 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.038119 B = 0.006487 C = 0.006204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.356915 B = 4315.352346 C = 4512.015885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.266 3.734 3 H 0.046 0.954 4 C -0.532 4.532 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.900 3.100 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.705 5.705 13 C 0.522 3.478 14 O -0.552 6.552 15 C -0.122 4.122 16 C -0.137 4.137 17 C -0.091 4.091 18 C -0.167 4.167 19 C 0.061 3.939 20 O -0.375 6.375 21 C 0.076 3.924 22 H 0.025 0.975 23 H 0.088 0.912 24 H 0.015 0.985 25 H 0.263 0.737 26 H 0.385 0.615 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.101 0.899 34 H 0.043 0.957 35 H 0.090 0.910 36 H 0.055 0.945 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.137 -5.381 -13.886 15.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.164 3.836 3 H 0.064 0.936 4 C -0.571 4.571 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.728 3.272 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.352 5.352 13 C 0.307 3.693 14 O -0.431 6.431 15 C -0.126 4.126 16 C -0.195 4.195 17 C -0.129 4.129 18 C -0.205 4.205 19 C -0.016 4.016 20 O -0.293 6.293 21 C -0.001 4.001 22 H 0.045 0.955 23 H 0.106 0.894 24 H 0.034 0.966 25 H 0.073 0.927 26 H 0.218 0.782 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.119 0.881 34 H 0.062 0.938 35 H 0.108 0.892 36 H 0.073 0.927 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.663 -4.457 -13.631 14.586 hybrid contribution 0.682 -0.823 0.747 1.304 sum 3.344 -5.280 -12.883 14.319 Atomic orbital electron populations 1.22038 0.98421 0.99093 1.00730 1.18708 0.91077 0.93812 0.80019 0.93575 1.21272 1.32252 1.13119 0.90415 0.92125 1.24890 0.94855 0.94962 0.99032 1.69917 1.35997 1.22501 1.23685 0.86412 0.78599 0.79513 0.82674 1.19770 1.20921 1.20877 1.46458 1.64866 1.13369 1.10541 1.19934 0.78117 0.87157 0.84141 1.90568 1.51461 1.16351 1.84697 1.21554 0.97304 0.97761 0.95999 1.21748 0.94151 1.01542 1.02023 1.21359 0.97656 0.98456 0.95422 1.22386 0.95856 0.98475 1.03742 1.22592 1.00686 0.90305 0.87982 1.88000 1.28084 1.63250 1.49951 1.22590 0.83237 0.93627 1.00636 0.95542 0.89384 0.96599 0.92685 0.78246 0.91654 0.91938 0.91685 0.90859 0.92104 0.91554 0.88100 0.93840 0.89221 0.92695 0.88599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 9.26 37.16 0.34 -3.39 16 2 C 0.27 6.93 2.56 -69.09 -0.18 6.75 16 3 H 0.05 1.39 7.58 -51.93 -0.39 0.99 16 4 C -0.53 -14.32 8.73 -34.44 -0.30 -14.62 16 5 H 0.06 1.56 7.73 -52.49 -0.41 1.15 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -25.30 11.32 55.43 0.63 -24.67 16 8 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 9 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 N -0.71 -15.09 4.85 -54.94 -0.27 -15.36 16 13 C 0.52 10.62 5.87 -10.98 -0.06 10.56 16 14 O -0.55 -13.26 13.51 5.56 0.08 -13.18 16 15 C -0.12 -1.82 0.63 -155.53 -0.10 -1.92 16 16 C -0.14 -1.68 8.39 37.16 0.31 -1.37 16 17 C -0.09 -1.26 4.46 -26.55 -0.12 -1.38 16 18 C -0.17 -2.40 5.81 -26.59 -0.15 -2.55 16 19 C 0.06 0.81 6.84 37.20 0.25 1.06 16 20 O -0.37 -6.03 10.45 -35.23 -0.37 -6.39 16 21 C 0.08 1.04 5.46 37.20 0.20 1.25 16 22 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 24 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 26 H 0.39 7.22 7.36 -40.82 -0.30 6.92 16 27 H 0.06 0.78 7.58 -51.93 -0.39 0.38 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.07 1.09 8.02 -51.93 -0.42 0.67 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.10 1.86 5.82 -51.93 -0.30 1.56 16 34 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.10 1.26 7.51 -51.93 -0.39 0.87 16 LS Contribution 293.55 15.07 4.42 4.42 Total: -1.00 -31.26 293.55 -6.28 -37.54 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -5.86 Total: 5.73 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: 0.11 Total: -3.92 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 0.36 Total: -40.03 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -0.29 Total: -19.58 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.26 -6.28 -37.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334364854.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.186 kcal (2) G-P(sol) polarization free energy of solvation -31.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds