Wall clock time and date at job start Thu Apr 9 2020 12:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46903 * 2 1 4 4 C 1.50700 * 109.46848 * 119.99689 * 2 1 3 5 5 H 1.07997 * 120.00272 * 120.00385 * 4 2 1 6 6 C 1.37881 * 119.99885 * 300.00211 * 4 2 1 7 7 N 1.31509 * 120.00345 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99885 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46911 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47065 * 120.00028 * 8 6 4 11 11 H 1.48492 * 109.46996 * 240.00152 * 8 6 4 12 12 N 1.46493 * 109.47638 * 239.99559 * 2 1 3 13 13 C 1.34784 * 119.99864 * 84.99998 * 12 2 1 14 14 O 1.21283 * 119.99649 * 359.72839 * 13 12 2 15 15 C 1.50694 * 119.99988 * 179.72721 * 13 12 2 16 16 C 1.52997 * 109.52262 * 299.87493 * 15 13 12 17 17 C 1.53179 * 109.52158 * 179.68525 * 15 13 12 18 18 C 1.53180 * 109.03628 * 297.07511 * 17 15 13 19 19 C 1.53089 * 109.16399 * 303.01606 * 18 17 15 20 20 O 1.42904 * 109.41267 * 57.61032 * 19 18 17 21 21 C 1.42910 * 114.09972 * 298.84280 * 20 19 18 22 22 H 1.09003 * 109.46903 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47399 * 300.00132 * 1 2 3 24 24 H 1.09003 * 109.46886 * 60.00613 * 1 2 3 25 25 H 0.96995 * 120.00482 * 179.97438 * 7 6 4 26 26 H 0.97000 * 120.00740 * 264.72691 * 12 2 1 27 27 H 1.09003 * 109.47538 * 60.00031 * 16 15 13 28 28 H 1.08999 * 109.47180 * 180.02562 * 16 15 13 29 29 H 1.09000 * 109.46941 * 300.00059 * 16 15 13 30 30 H 1.08998 * 109.54085 * 56.94263 * 17 15 13 31 31 H 1.08998 * 109.54377 * 177.20510 * 17 15 13 32 32 H 1.08998 * 109.51934 * 183.11327 * 18 17 15 33 33 H 1.08993 * 109.52374 * 62.92698 * 18 17 15 34 34 H 1.09004 * 109.48292 * 297.63179 * 19 18 17 35 35 H 1.08994 * 109.48358 * 177.58906 * 19 18 17 36 36 H 1.09001 * 109.47563 * 301.17706 * 21 20 19 37 37 H 1.08998 * 109.47880 * 181.14328 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1316 6 6 1.6991 -0.2392 2.4828 7 7 0.9434 0.8303 2.6034 8 14 2.3223 -1.1193 4.0081 9 1 3.1482 -2.2854 3.6040 10 1 3.1470 -0.1855 4.8162 11 1 1.1676 -1.5864 4.8165 12 7 2.0184 -0.6906 -1.1960 13 6 2.1472 -0.0183 -2.3571 14 8 1.8540 1.1572 -2.4128 15 6 2.6555 -0.7272 -3.5859 16 6 4.0609 -1.2695 -3.3187 17 6 2.6988 0.2537 -4.7616 18 6 1.2754 0.7297 -5.0679 19 6 0.3906 -0.4855 -5.3576 20 8 0.4192 -1.3718 -4.2369 21 6 1.7173 -1.8862 -3.9327 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 0.7087 1.1615 3.4843 26 1 2.2530 -1.6308 -1.1515 27 1 4.0277 -1.9694 -2.4837 28 1 4.4279 -1.7817 -4.2081 29 1 4.7287 -0.4435 -3.0740 30 1 3.3210 1.1094 -4.4997 31 1 3.1129 -0.2453 -5.6377 32 1 1.2901 1.3854 -5.9385 33 1 0.8799 1.2719 -4.2091 34 1 0.7632 -1.0043 -6.2408 35 1 -0.6332 -0.1559 -5.5342 36 1 2.1072 -2.4232 -4.7974 37 1 1.6492 -2.5655 -3.0831 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334364854.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:56 Heat of formation + Delta-G solvation = -122.937174 kcal Electronic energy + Delta-G solvation = -18568.354824 eV Core-core repulsion = 15730.083948 eV Total energy + Delta-G solvation = -2838.270876 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.64802 -39.17842 -36.74836 -35.41002 -34.40132 -32.98249 -30.59798 -27.84670 -27.35634 -26.00889 -24.70278 -23.00123 -21.81161 -20.55129 -18.61941 -17.56825 -17.31422 -16.92087 -16.61949 -16.07491 -15.88307 -15.33554 -15.11144 -14.80233 -14.40938 -13.84770 -13.55803 -13.44309 -13.13498 -13.00008 -12.91794 -12.89981 -12.80547 -12.67659 -12.29555 -12.12070 -11.92167 -11.50747 -11.38515 -11.09354 -10.65388 -10.56350 -10.18440 -9.67251 -8.17988 -6.35958 1.43951 1.44205 1.56935 1.89559 2.35395 2.64235 3.03854 3.12438 3.60261 3.76024 3.88764 4.06551 4.19248 4.31800 4.51529 4.56651 4.71190 4.72299 4.74469 4.76800 4.90756 4.92456 4.97658 5.04740 5.10302 5.23923 5.28447 5.41276 5.51871 5.64393 5.70496 5.91369 6.10172 6.28883 6.72969 7.02306 7.32504 7.62601 8.88791 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.038119 B = 0.006487 C = 0.006204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.356915 B = 4315.352346 C = 4512.015885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.273 3.727 3 H -0.006 1.006 4 C -0.546 4.546 5 H 0.074 0.926 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.975 3.025 9 H -0.258 1.258 10 H -0.283 1.283 11 H -0.279 1.279 12 N -0.704 5.704 13 C 0.512 3.488 14 O -0.597 6.597 15 C -0.114 4.114 16 C -0.134 4.134 17 C -0.091 4.091 18 C -0.168 4.168 19 C 0.059 3.941 20 O -0.408 6.408 21 C 0.073 3.927 22 H 0.037 0.963 23 H 0.065 0.935 24 H 0.005 0.995 25 H 0.265 0.735 26 H 0.400 0.600 27 H 0.067 0.933 28 H 0.103 0.897 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.104 0.896 32 H 0.089 0.911 33 H 0.049 0.951 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.494 -8.055 -15.298 17.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.170 3.830 3 H 0.012 0.988 4 C -0.584 4.584 5 H 0.092 0.908 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.799 3.201 9 H -0.182 1.182 10 H -0.209 1.209 11 H -0.204 1.204 12 N -0.352 5.352 13 C 0.299 3.701 14 O -0.478 6.478 15 C -0.118 4.118 16 C -0.191 4.191 17 C -0.129 4.129 18 C -0.206 4.206 19 C -0.017 4.017 20 O -0.327 6.327 21 C -0.003 4.003 22 H 0.056 0.944 23 H 0.084 0.916 24 H 0.024 0.976 25 H 0.074 0.926 26 H 0.235 0.765 27 H 0.086 0.914 28 H 0.122 0.878 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.123 0.877 32 H 0.107 0.893 33 H 0.068 0.932 34 H 0.099 0.901 35 H 0.110 0.890 36 H 0.116 0.884 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.037 -7.165 -15.072 17.170 hybrid contribution 0.233 0.092 1.135 1.162 sum 4.270 -7.073 -13.938 16.203 Atomic orbital electron populations 1.21845 0.98668 0.99114 0.99070 1.18269 0.90820 0.91715 0.82229 0.98825 1.21588 1.32481 1.13508 0.90785 0.90770 1.25851 0.94857 0.95584 1.02467 1.70070 1.37134 1.24067 1.24541 0.85260 0.78099 0.78531 0.78217 1.18153 1.20923 1.20424 1.46224 1.65175 1.13994 1.09811 1.21096 0.76802 0.86863 0.85308 1.90558 1.53026 1.18716 1.85540 1.21601 0.99028 0.98160 0.92969 1.21784 0.91889 1.01314 1.04152 1.21430 0.97026 0.97954 0.96466 1.22339 0.96496 0.99230 1.02529 1.22741 1.00864 0.89646 0.88428 1.87959 1.29629 1.63802 1.51286 1.22795 0.82089 0.92876 1.02571 0.94428 0.91627 0.97575 0.92573 0.76472 0.91354 0.87836 0.93028 0.92826 0.87734 0.89273 0.93239 0.90112 0.89033 0.88360 0.88500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.92 9.26 71.98 0.67 -6.26 16 2 C 0.27 14.81 2.56 44.25 0.11 14.92 16 3 H -0.01 -0.39 7.58 -2.39 -0.02 -0.41 16 4 C -0.55 -29.61 8.73 25.60 0.22 -29.39 16 5 H 0.07 3.74 7.73 -2.91 -0.02 3.71 16 6 C 0.01 0.67 5.30 84.66 0.45 1.11 16 7 N -0.92 -54.14 11.32 21.45 0.24 -53.90 16 8 Si 0.97 42.59 29.54 68.60 2.03 44.61 16 9 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 10 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 11 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 12 N -0.70 -30.59 4.85 -446.10 -2.16 -32.75 16 13 C 0.51 21.24 5.87 87.65 0.51 21.76 16 14 O -0.60 -30.34 13.51 -3.04 -0.04 -30.38 16 15 C -0.11 -3.18 0.63 -52.84 -0.03 -3.21 16 16 C -0.13 -2.86 8.39 71.98 0.60 -2.26 16 17 C -0.09 -2.32 4.46 30.71 0.14 -2.18 16 18 C -0.17 -4.68 5.81 30.68 0.18 -4.50 16 19 C 0.06 1.43 6.84 72.01 0.49 1.93 16 20 O -0.41 -12.36 10.45 -148.98 -1.56 -13.92 16 21 C 0.07 1.77 5.46 72.01 0.39 2.16 16 22 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 23 H 0.07 3.83 6.07 -2.39 -0.01 3.82 16 24 H 0.01 0.28 8.14 -2.39 -0.02 0.27 16 25 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 26 H 0.40 14.75 7.36 -92.71 -0.68 14.06 16 27 H 0.07 1.42 7.58 -2.39 -0.02 1.40 16 28 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.05 1.56 8.02 -2.39 -0.02 1.55 16 31 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.05 1.90 5.82 -2.39 -0.01 1.89 16 34 H 0.08 1.37 8.14 -2.39 -0.02 1.36 16 35 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.10 2.27 7.51 -2.39 -0.02 2.26 16 Total: -1.00 -71.87 293.55 2.62 -69.26 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: 0.37 Total: 22.99 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: 3.74 Total: -5.91 kcal Atomic # 7 Polarization: -84.73 SS G_CDS: -1.92 Total: -86.65 kcal Atomic # 8 Polarization: -42.70 SS G_CDS: -1.60 Total: -44.30 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.61 kcal Total: -71.87 2.62 -69.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334364854.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.679 kcal (2) G-P(sol) polarization free energy of solvation -71.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds