Wall clock time and date at job start Thu Apr 9 2020 12:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47081 * 2 1 4 4 C 1.50696 * 109.47229 * 120.00653 * 2 1 3 5 5 H 1.07994 * 120.00477 * 84.94355 * 4 2 1 6 6 C 1.37887 * 119.99802 * 264.94542 * 4 2 1 7 7 N 1.31505 * 119.99972 * 179.58799 * 6 4 2 8 8 Si 1.86803 * 119.99824 * 359.59214 * 6 4 2 9 9 H 1.48490 * 109.47265 * 269.78647 * 8 6 4 10 10 H 1.48500 * 109.47220 * 29.79231 * 8 6 4 11 11 H 1.48498 * 109.46933 * 149.78890 * 8 6 4 12 12 N 1.46502 * 109.47090 * 240.00399 * 2 1 3 13 13 C 1.34774 * 119.99735 * 84.99560 * 12 2 1 14 14 O 1.21284 * 120.00690 * 0.02562 * 13 12 2 15 15 C 1.50702 * 119.99858 * 179.97438 * 13 12 2 16 16 C 1.53005 * 109.52011 * 59.87849 * 15 13 12 17 17 C 1.53176 * 109.52515 * 180.02562 * 15 13 12 18 18 C 1.53178 * 109.03526 * 62.92720 * 17 15 13 19 19 C 1.53091 * 109.16324 * 56.98016 * 18 17 15 20 20 O 1.42902 * 109.41660 * 302.39190 * 19 18 17 21 21 C 1.42903 * 114.09696 * 61.15661 * 20 19 18 22 22 H 1.09005 * 109.46630 * 294.44733 * 1 2 3 23 23 H 1.09004 * 109.46849 * 54.44289 * 1 2 3 24 24 H 1.08995 * 109.47247 * 174.44501 * 1 2 3 25 25 H 0.97004 * 120.00160 * 180.02562 * 7 6 4 26 26 H 0.96999 * 120.00075 * 265.00578 * 12 2 1 27 27 H 1.08999 * 109.47218 * 60.00318 * 16 15 13 28 28 H 1.09007 * 109.47222 * 179.97438 * 16 15 13 29 29 H 1.09000 * 109.47069 * 300.00316 * 16 15 13 30 30 H 1.08995 * 109.54582 * 182.79482 * 17 15 13 31 31 H 1.09001 * 109.54424 * 302.97488 * 17 15 13 32 32 H 1.08999 * 109.52637 * 176.88793 * 18 17 15 33 33 H 1.08997 * 109.52615 * 297.07470 * 18 17 15 34 34 H 1.09002 * 109.48205 * 62.37513 * 19 18 17 35 35 H 1.09003 * 109.48403 * 182.39309 * 19 18 17 36 36 H 1.08994 * 109.48238 * 178.85661 * 21 20 19 37 37 H 1.09000 * 109.48126 * 58.82479 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.1347 -1.7856 1.2292 6 6 2.3613 0.0121 2.3577 7 7 2.7920 -0.6087 3.4341 8 14 2.1952 1.8727 2.3560 9 1 3.4700 2.4831 1.9009 10 1 1.0995 2.2709 1.4361 11 1 1.8838 2.3431 3.7296 12 7 2.0183 -0.6905 -1.1962 13 6 2.1469 -0.0181 -2.3571 14 8 1.8589 1.1588 -2.4115 15 6 2.6498 -0.7282 -3.5875 16 6 1.7087 -1.8848 -3.9308 17 6 2.7022 0.2552 -4.7608 18 6 3.7048 1.3669 -4.4364 19 6 5.0706 0.7414 -4.1411 20 8 4.9450 -0.1854 -3.0606 21 6 4.0563 -1.2728 -3.3250 22 1 -0.3633 0.4253 0.9356 23 1 -0.3633 0.5976 -0.8361 24 1 -0.3633 -1.0228 -0.0995 25 1 3.0231 -0.1004 4.2273 26 1 2.2489 -1.6317 -1.1528 27 1 0.7084 -1.4953 -4.1200 28 1 2.0729 -2.3976 -4.8211 29 1 1.6741 -2.5850 -3.0962 30 1 3.0184 -0.2693 -5.6624 31 1 1.7143 0.6879 -4.9182 32 1 3.7895 2.0411 -5.2887 33 1 3.3625 1.9229 -3.5637 34 1 5.4308 0.2195 -5.0277 35 1 5.7778 1.5247 -3.8680 36 1 4.0327 -1.9406 -2.4639 37 1 4.4032 -1.8210 -4.2009 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334364860.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:02 Heat of formation + Delta-G solvation = -100.500527 kcal Electronic energy + Delta-G solvation = -18661.374891 eV Core-core repulsion = 15824.076941 eV Total energy + Delta-G solvation = -2837.297950 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.37425 -37.82648 -34.97255 -34.19249 -32.57173 -31.77512 -29.43460 -26.90257 -25.26624 -24.96293 -23.28529 -21.65549 -20.01819 -19.11612 -17.17251 -16.25054 -16.00977 -15.43365 -15.35173 -14.80016 -14.18543 -14.10469 -13.72703 -13.27405 -12.58206 -12.49455 -12.46234 -12.38591 -12.09032 -11.91570 -11.77349 -11.40707 -11.09587 -10.87022 -10.77209 -10.54020 -10.48401 -10.25046 -9.83219 -9.41420 -9.11617 -8.84005 -8.66572 -7.97834 -6.18969 -4.22208 3.28128 3.34444 3.37884 3.45502 3.95236 4.12720 4.37130 4.65214 4.88564 4.91554 5.11887 5.19397 5.28100 5.36981 5.48793 5.50902 5.63422 5.70622 5.76673 5.88699 5.95902 6.03258 6.18221 6.28319 6.36268 6.55092 6.64883 6.71596 6.99624 7.21696 7.31840 7.45657 7.62787 8.19522 8.64267 8.81712 9.07480 9.43710 10.92877 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.028411 B = 0.007892 C = 0.007525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.282289 B = 3547.172000 C = 3719.906614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.232 3.768 3 H 0.050 0.950 4 C -0.528 4.528 5 H 0.078 0.922 6 C 0.081 3.919 7 N -0.890 5.890 8 Si 0.874 3.126 9 H -0.274 1.274 10 H -0.259 1.259 11 H -0.286 1.286 12 N -0.700 5.700 13 C 0.522 3.478 14 O -0.556 6.556 15 C -0.122 4.122 16 C -0.137 4.137 17 C -0.091 4.091 18 C -0.168 4.168 19 C 0.060 3.940 20 O -0.372 6.372 21 C 0.075 3.925 22 H 0.054 0.946 23 H 0.028 0.972 24 H 0.043 0.957 25 H 0.267 0.733 26 H 0.390 0.610 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.100 0.900 34 H 0.044 0.956 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.036 -1.444 -16.071 16.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.130 3.870 3 H 0.067 0.933 4 C -0.566 4.566 5 H 0.096 0.904 6 C -0.124 4.124 7 N -0.527 5.527 8 Si 0.701 3.299 9 H -0.199 1.199 10 H -0.184 1.184 11 H -0.212 1.212 12 N -0.347 5.347 13 C 0.307 3.693 14 O -0.436 6.436 15 C -0.126 4.126 16 C -0.195 4.195 17 C -0.129 4.129 18 C -0.205 4.205 19 C -0.017 4.017 20 O -0.291 6.291 21 C -0.002 4.002 22 H 0.073 0.927 23 H 0.047 0.953 24 H 0.063 0.937 25 H 0.077 0.923 26 H 0.224 0.776 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.118 0.882 34 H 0.062 0.938 35 H 0.108 0.892 36 H 0.117 0.883 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.984 -0.560 -15.688 15.728 hybrid contribution -0.086 0.422 -0.088 0.440 sum 0.897 -0.137 -15.775 15.801 Atomic orbital electron populations 1.22238 0.98828 0.99876 0.99698 1.19091 0.90641 0.94406 0.82909 0.93250 1.21004 1.44978 0.95573 0.95078 0.90428 1.24931 0.93522 0.98584 0.95321 1.69879 1.43383 1.36233 1.03199 0.86887 0.79801 0.85886 0.77339 1.19920 1.18368 1.21217 1.46549 1.64755 1.13669 1.09771 1.20054 0.77743 0.87168 0.84350 1.90555 1.51808 1.16070 1.85120 1.21556 0.97596 0.97604 0.95829 1.21752 0.99064 0.96609 1.02029 1.21360 1.00702 0.95612 0.95201 1.22392 0.95373 0.98809 1.03927 1.22599 0.97071 0.92283 0.89724 1.88035 1.64159 1.36882 1.39984 1.22611 0.86811 0.88958 1.01825 0.92742 0.95327 0.93744 0.92328 0.77638 0.91792 0.91779 0.91625 0.92006 0.90944 0.91534 0.88194 0.93787 0.89193 0.88310 0.92622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 9.43 37.16 0.35 -2.94 16 2 C 0.23 5.65 2.13 -69.08 -0.15 5.50 16 3 H 0.05 1.33 4.82 -51.93 -0.25 1.08 16 4 C -0.53 -14.45 9.05 -34.44 -0.31 -14.77 16 5 H 0.08 2.23 8.06 -52.49 -0.42 1.80 16 6 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 7 N -0.89 -26.62 13.96 55.43 0.77 -25.84 16 8 Si 0.87 22.08 26.84 -169.99 -4.56 17.52 16 9 H -0.27 -6.98 7.11 56.52 0.40 -6.58 16 10 H -0.26 -6.44 6.76 56.52 0.38 -6.06 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 N -0.70 -14.44 4.85 -54.93 -0.27 -14.71 16 13 C 0.52 10.21 5.88 -10.99 -0.06 10.15 16 14 O -0.56 -12.72 13.50 5.55 0.07 -12.65 16 15 C -0.12 -1.76 0.63 -155.52 -0.10 -1.86 16 16 C -0.14 -1.56 8.38 37.16 0.31 -1.25 16 17 C -0.09 -1.21 4.45 -26.55 -0.12 -1.33 16 18 C -0.17 -2.38 5.81 -26.59 -0.15 -2.53 16 19 C 0.06 0.81 6.84 37.20 0.25 1.06 16 20 O -0.37 -6.21 10.45 -35.23 -0.37 -6.58 16 21 C 0.08 1.04 5.47 37.20 0.20 1.25 16 22 H 0.05 1.22 7.97 -51.93 -0.41 0.81 16 23 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 26 H 0.39 7.16 7.42 -40.82 -0.30 6.86 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 29 H 0.06 0.72 7.56 -51.93 -0.39 0.33 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 1.02 8.03 -51.93 -0.42 0.60 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.10 1.82 5.81 -51.93 -0.30 1.51 16 34 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.10 1.36 7.52 -51.93 -0.39 0.96 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 292.89 15.07 4.41 4.41 Total: -1.00 -32.17 292.89 -5.66 -37.83 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -5.85 Total: 4.54 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: 0.13 Total: -4.52 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: 0.51 Total: -40.55 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -0.29 Total: -19.23 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.56 Total: 17.52 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -32.17 -5.66 -37.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334364860.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.674 kcal (2) G-P(sol) polarization free energy of solvation -32.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds