Wall clock time and date at job start Thu Apr 9 2020 12:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00141 * 2 1 4 4 H 1.08999 * 109.46760 * 329.99889 * 3 2 1 5 5 C 1.52999 * 109.47177 * 89.99803 * 3 2 1 6 6 C 1.50698 * 109.47045 * 210.00056 * 3 2 1 7 7 O 1.21278 * 120.00125 * 344.40834 * 6 3 2 8 8 N 1.34782 * 119.99837 * 164.40533 * 6 3 2 9 9 C 1.46920 * 120.63117 * 4.11982 * 8 6 3 10 10 C 1.53625 * 108.54517 * 126.36588 * 9 8 6 11 11 C 1.53038 * 109.23875 * 54.85675 * 10 9 8 12 12 C 1.50698 * 109.45129 * 178.50070 * 11 10 9 13 13 H 1.07993 * 120.00534 * 120.05618 * 12 11 10 14 14 C 1.37883 * 119.99568 * 300.06207 * 12 11 10 15 15 N 1.31518 * 120.00069 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 119.99953 * 179.97438 * 14 12 11 17 17 H 1.48508 * 109.47274 * 59.99824 * 16 14 12 18 18 H 1.48501 * 109.47365 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47434 * 300.00244 * 16 14 12 20 20 C 1.53042 * 109.53923 * 298.51126 * 11 10 9 21 21 C 1.46924 * 120.62817 * 184.39967 * 8 6 3 22 22 H 1.08998 * 109.47070 * 300.00261 * 1 2 3 23 23 H 1.09008 * 109.47289 * 59.99846 * 1 2 3 24 24 H 1.08994 * 109.47301 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47075 * 301.44878 * 5 3 2 26 26 H 1.09002 * 109.46589 * 61.44648 * 5 3 2 27 27 H 1.08999 * 109.46955 * 181.44231 * 5 3 2 28 28 H 1.08994 * 109.58752 * 246.20198 * 9 8 6 29 29 H 1.09008 * 109.58838 * 6.62478 * 9 8 6 30 30 H 1.08992 * 109.63386 * 294.86988 * 10 9 8 31 31 H 1.09000 * 109.43376 * 174.72395 * 10 9 8 32 32 H 1.09007 * 109.46147 * 58.52873 * 11 10 9 33 33 H 0.96994 * 119.99602 * 179.97438 * 15 14 12 34 34 H 1.09000 * 109.49762 * 301.41808 * 20 11 10 35 35 H 1.09004 * 109.49762 * 181.31370 * 20 11 10 36 36 H 1.08999 * 109.58751 * 353.37431 * 21 8 6 37 37 H 1.09000 * 109.58786 * 113.65863 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 2.2177 1.7714 1.4425 6 6 3.3386 1.2638 -0.7104 7 8 3.8809 0.1996 -0.9204 8 7 3.9240 2.4094 -1.1125 9 6 3.3247 3.7107 -0.7867 10 6 4.3869 4.5781 -0.0943 11 6 5.6277 4.6636 -0.9860 12 6 6.6589 5.5437 -0.3279 13 1 7.6310 5.1441 -0.0801 14 6 6.3610 6.8593 -0.0422 15 7 5.1773 7.3462 -0.3445 16 14 7.6389 7.9502 0.7741 17 1 8.8431 8.0346 -0.0910 18 1 7.0756 9.3099 0.9716 19 1 8.0143 7.3734 2.0899 20 6 6.2088 3.2625 -1.1901 21 6 5.1703 2.3803 -1.8901 22 1 -0.3633 0.5139 0.8899 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.2604 1.7768 1.9637 26 1 2.9032 1.0917 1.9487 27 1 2.6373 2.7773 1.4425 28 1 2.9906 4.1986 -1.7023 29 1 2.4767 3.5652 -0.1174 30 1 4.6568 4.1322 0.8629 31 1 3.9872 5.5788 0.0697 32 1 5.3523 5.0867 -1.9521 33 1 4.9677 8.2715 -0.1431 34 1 6.4615 2.8290 -0.2225 35 1 7.1058 3.3269 -1.8060 36 1 5.5404 1.3568 -1.9490 37 1 4.9831 2.7597 -2.8947 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334453447.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:05 Heat of formation + Delta-G solvation = -106.093388 kcal Electronic energy + Delta-G solvation = -18219.342625 eV Core-core repulsion = 15381.802150 eV Total energy + Delta-G solvation = -2837.540475 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.39469 -39.02424 -38.06070 -35.39255 -33.62511 -32.29639 -31.30616 -28.16295 -27.65162 -25.58466 -24.21527 -23.63087 -21.58746 -19.86060 -18.75577 -18.17945 -17.65600 -16.79374 -16.50682 -16.38456 -15.74999 -15.42840 -14.95401 -14.70902 -14.52947 -14.20264 -14.02190 -13.52906 -13.34225 -13.22357 -12.90397 -12.78688 -12.75481 -12.46821 -12.13590 -12.10745 -11.92249 -11.47278 -11.07436 -11.00596 -10.77362 -10.48321 -10.36228 -9.57833 -8.06799 -6.19402 1.43890 1.44920 1.51675 1.52707 1.81916 2.45487 2.93321 3.20002 3.46565 3.85606 4.01001 4.10361 4.24433 4.34221 4.47220 4.49468 4.56002 4.56863 4.62112 4.68952 4.78242 4.85517 4.86577 4.96940 5.16498 5.19520 5.26580 5.43193 5.52379 5.65975 6.00132 6.08913 6.14867 6.40513 6.47127 6.89154 7.12551 7.48122 8.96527 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.040455 B = 0.005862 C = 0.005457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.962045 B = 4775.091774 C = 5129.962152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.394 6.394 3 C 0.076 3.924 4 H 0.112 0.888 5 C -0.170 4.170 6 C 0.506 3.494 7 O -0.580 6.580 8 N -0.600 5.600 9 C 0.106 3.894 10 C -0.114 4.114 11 C 0.045 3.955 12 C -0.536 4.536 13 H 0.045 0.955 14 C 0.021 3.979 15 N -0.910 5.910 16 Si 0.946 3.054 17 H -0.276 1.276 18 H -0.282 1.282 19 H -0.276 1.276 20 C -0.113 4.113 21 C 0.116 3.884 22 H 0.063 0.937 23 H 0.054 0.946 24 H 0.099 0.901 25 H 0.098 0.902 26 H 0.052 0.948 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.104 0.896 30 H 0.030 0.970 31 H 0.083 0.917 32 H 0.006 0.994 33 H 0.262 0.738 34 H 0.040 0.960 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.557 -6.973 1.026 12.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.313 6.313 3 C 0.015 3.985 4 H 0.129 0.871 5 C -0.227 4.227 6 C 0.295 3.705 7 O -0.460 6.460 8 N -0.333 5.333 9 C -0.016 4.016 10 C -0.153 4.153 11 C 0.026 3.974 12 C -0.575 4.575 13 H 0.063 0.937 14 C -0.178 4.178 15 N -0.549 5.549 16 Si 0.773 3.227 17 H -0.202 1.202 18 H -0.207 1.207 19 H -0.201 1.201 20 C -0.151 4.151 21 C -0.006 4.006 22 H 0.081 0.919 23 H 0.073 0.927 24 H 0.118 0.882 25 H 0.117 0.883 26 H 0.071 0.929 27 H 0.099 0.901 28 H 0.091 0.909 29 H 0.122 0.878 30 H 0.049 0.951 31 H 0.102 0.898 32 H 0.024 0.976 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.273 -7.524 0.922 12.767 hybrid contribution 0.835 0.989 0.362 1.344 sum -9.438 -6.535 1.284 11.552 Atomic orbital electron populations 1.23132 0.78523 1.04333 1.01559 1.87999 1.22086 1.26035 1.95197 1.21974 0.92065 0.86901 0.97557 0.87093 1.22304 1.04462 1.02103 0.93855 1.21064 0.87761 0.83151 0.78512 1.90622 1.66330 1.31035 1.58040 1.48244 1.25093 1.06369 1.53585 1.22221 0.96682 0.81850 1.00816 1.21867 0.96327 0.99711 0.97374 1.18616 0.93398 0.90631 0.94725 1.21505 0.99712 0.96188 1.40047 0.93652 1.25577 0.97051 0.98990 0.96169 1.69919 1.21413 1.15227 1.48374 0.85799 0.79743 0.78132 0.79059 1.20164 1.20731 1.20133 1.21856 0.97532 0.96585 0.99167 1.21611 0.84083 1.00520 0.94415 0.91873 0.92744 0.88211 0.88326 0.92852 0.90133 0.90945 0.87790 0.95100 0.89839 0.97591 0.92849 0.94145 0.91800 0.90550 0.90692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.82 113.37 1.23 1.57 16 2 O -0.39 -11.18 9.93 -130.42 -1.29 -12.48 16 3 C 0.08 2.04 2.28 29.85 0.07 2.11 16 4 H 0.11 2.31 6.92 -2.39 -0.02 2.30 16 5 C -0.17 -4.01 9.17 71.98 0.66 -3.35 16 6 C 0.51 18.11 7.00 87.66 0.61 18.72 16 7 O -0.58 -25.40 15.99 15.54 0.25 -25.15 16 8 N -0.60 -21.00 2.97 -818.07 -2.43 -23.42 16 9 C 0.11 3.45 5.72 86.51 0.49 3.95 16 10 C -0.11 -4.83 5.17 30.82 0.16 -4.67 16 11 C 0.04 2.11 2.06 -11.51 -0.02 2.09 16 12 C -0.54 -28.50 8.56 25.60 0.22 -28.29 16 13 H 0.05 2.42 7.74 -2.91 -0.02 2.40 16 14 C 0.02 1.13 5.30 84.66 0.45 1.57 16 15 N -0.91 -48.88 11.31 21.45 0.24 -48.64 16 16 Si 0.95 42.12 29.54 68.60 2.03 44.15 16 17 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 18 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 19 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 20 C -0.11 -4.66 5.30 30.67 0.16 -4.50 16 21 C 0.12 4.23 6.44 86.36 0.56 4.79 16 22 H 0.06 0.83 7.84 -2.39 -0.02 0.81 16 23 H 0.05 0.80 8.09 -2.38 -0.02 0.78 16 24 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.10 1.70 7.84 -2.39 -0.02 1.68 16 26 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.08 1.95 6.07 -2.39 -0.01 1.93 16 28 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.10 2.69 4.34 -2.38 -0.01 2.68 16 30 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.08 3.93 6.03 -2.39 -0.01 3.92 16 32 H 0.01 0.30 8.14 -2.38 -0.02 0.29 16 33 H 0.26 13.48 8.31 -92.71 -0.77 12.71 16 34 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.06 2.54 8.14 -2.38 -0.02 2.52 16 36 H 0.08 2.85 7.00 -2.39 -0.02 2.83 16 37 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -64.85 294.18 4.42 -60.43 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: 1.04 Total: 11.10 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: 4.58 Total: -5.99 kcal Atomic # 7 Polarization: -69.88 SS G_CDS: -2.18 Total: -72.06 kcal Atomic # 8 Polarization: -36.58 SS G_CDS: -1.05 Total: -37.63 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -64.85 4.42 -60.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334453447.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.665 kcal (2) G-P(sol) polarization free energy of solvation -64.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds