Wall clock time and date at job start Thu Apr 9 2020 12:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99985 * 180.27663 * 6 4 2 8 8 Si 1.86800 * 119.99777 * 0.28166 * 6 4 2 9 9 H 1.48498 * 109.47109 * 89.99834 * 8 6 4 10 10 H 1.48507 * 109.46754 * 209.99574 * 8 6 4 11 11 H 1.48498 * 109.47278 * 329.99405 * 8 6 4 12 12 N 1.46491 * 109.47168 * 239.99410 * 2 1 3 13 13 C 1.34776 * 120.00056 * 85.00588 * 12 2 1 14 14 O 1.21288 * 120.00081 * 359.97438 * 13 12 2 15 15 C 1.50701 * 120.00464 * 180.02562 * 13 12 2 16 16 C 1.52994 * 109.48276 * 85.01615 * 15 13 12 17 17 C 1.53095 * 109.48269 * 205.05626 * 15 13 12 18 18 C 1.53176 * 109.16429 * 62.36648 * 17 15 13 19 19 C 1.53178 * 109.03664 * 56.98426 * 18 17 15 20 20 C 1.53095 * 109.16380 * 303.02091 * 19 18 17 21 21 O 1.42899 * 109.41572 * 57.60165 * 20 19 18 22 22 H 1.09001 * 109.47094 * 300.00451 * 1 2 3 23 23 H 1.09003 * 109.46851 * 60.00477 * 1 2 3 24 24 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 25 25 H 0.96996 * 119.99730 * 180.02562 * 7 6 4 26 26 H 0.97003 * 120.00221 * 265.00067 * 12 2 1 27 27 H 1.09001 * 109.47048 * 60.00463 * 16 15 13 28 28 H 1.09001 * 109.47186 * 179.97438 * 16 15 13 29 29 H 1.09002 * 109.47286 * 300.00038 * 16 15 13 30 30 H 1.08993 * 109.52573 * 182.27737 * 17 15 13 31 31 H 1.09000 * 109.51881 * 302.46773 * 17 15 13 32 32 H 1.08998 * 109.54682 * 297.11417 * 18 17 15 33 33 H 1.09000 * 109.61422 * 176.89457 * 18 17 15 34 34 H 1.08997 * 109.52805 * 183.11419 * 19 18 17 35 35 H 1.09004 * 109.52521 * 62.92202 * 19 18 17 36 36 H 1.08999 * 109.47824 * 297.62742 * 20 19 18 37 37 H 1.08995 * 109.49189 * 177.60032 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.7039 -0.2359 2.4828 7 7 2.1467 -0.8526 3.5566 8 14 0.6299 1.2829 2.6540 9 1 -0.7974 0.8766 2.7062 10 1 0.9857 2.0024 3.9035 11 1 0.8478 2.1772 1.4887 12 7 2.0183 -0.6907 -1.1960 13 6 2.1471 -0.0184 -2.3570 14 8 1.8583 1.1583 -2.4117 15 6 2.6489 -0.7290 -3.5876 16 6 1.4793 -1.4223 -4.2891 17 6 3.2860 0.2866 -4.5396 18 6 4.4924 0.9329 -3.8515 19 6 5.4745 -0.1646 -3.4304 20 6 4.7529 -1.1630 -2.5213 21 8 3.6240 -1.7034 -3.2108 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 1.9153 -0.5190 4.4376 26 1 2.2490 -1.6319 -1.1524 27 1 0.7359 -0.6789 -4.5768 28 1 1.8424 -1.9358 -5.1794 29 1 1.0263 -2.1458 -3.6112 30 1 3.6129 -0.2202 -5.4475 31 1 2.5564 1.0556 -4.7932 32 1 4.1590 1.4815 -2.9706 33 1 4.9846 1.6171 -4.5425 34 1 6.3098 0.2815 -2.8907 35 1 5.8456 -0.6808 -4.3158 36 1 4.4173 -0.6547 -1.6173 37 1 5.4352 -1.9694 -2.2528 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334579636.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:11 Heat of formation + Delta-G solvation = -92.928643 kcal Electronic energy + Delta-G solvation = -18729.558946 eV Core-core repulsion = 15892.589337 eV Total energy + Delta-G solvation = -2836.969609 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.50820 -37.71583 -35.14850 -33.53128 -32.71516 -32.27581 -29.81771 -27.69154 -25.21046 -24.32024 -23.46621 -21.50796 -20.14264 -19.23043 -17.53039 -16.28873 -16.03242 -15.64785 -14.91544 -14.62926 -14.45286 -13.91484 -13.75451 -13.34377 -12.96807 -12.61051 -12.30882 -12.26083 -12.20927 -11.96290 -11.88658 -11.65180 -11.24290 -10.95630 -10.82124 -10.68302 -10.36576 -10.19715 -9.73603 -9.61643 -9.23586 -8.78039 -8.75640 -8.13812 -6.21354 -4.23763 3.13302 3.22668 3.34299 3.38677 3.66968 4.02647 4.30893 4.73710 4.91642 4.99899 5.04288 5.13288 5.27591 5.35231 5.57567 5.64931 5.70649 5.76161 5.87601 5.99132 6.00875 6.09639 6.14344 6.23872 6.30423 6.36506 6.44420 6.55673 6.83740 7.11709 7.23995 7.33006 7.51324 8.15452 8.53538 8.75557 8.91775 9.39546 10.90787 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.031819 B = 0.007586 C = 0.007164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.771575 B = 3690.232772 C = 3907.388195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.235 3.765 3 H 0.047 0.953 4 C -0.534 4.534 5 H 0.080 0.920 6 C 0.078 3.922 7 N -0.892 5.892 8 Si 0.885 3.115 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.263 1.263 12 N -0.693 5.693 13 C 0.487 3.513 14 O -0.552 6.552 15 C 0.098 3.902 16 C -0.134 4.134 17 C -0.125 4.125 18 C -0.128 4.128 19 C -0.154 4.154 20 C 0.048 3.952 21 O -0.367 6.367 22 H 0.047 0.953 23 H 0.035 0.965 24 H 0.053 0.947 25 H 0.267 0.733 26 H 0.400 0.600 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.702 -0.453 -14.632 14.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.131 3.869 3 H 0.065 0.935 4 C -0.572 4.572 5 H 0.098 0.902 6 C -0.125 4.125 7 N -0.529 5.529 8 Si 0.715 3.285 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.187 1.187 12 N -0.341 5.341 13 C 0.271 3.729 14 O -0.431 6.431 15 C 0.056 3.944 16 C -0.192 4.192 17 C -0.163 4.163 18 C -0.165 4.165 19 C -0.191 4.191 20 C -0.029 4.029 21 O -0.286 6.286 22 H 0.065 0.935 23 H 0.054 0.946 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.234 0.766 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.478 0.178 -14.465 14.676 hybrid contribution -0.414 0.555 0.443 0.822 sum 2.064 0.733 -14.021 14.191 Atomic orbital electron populations 1.22442 0.99298 1.00878 0.99249 1.19118 0.90200 0.94595 0.82970 0.93529 1.21040 1.33330 1.14318 0.88486 0.90162 1.24832 0.95481 0.96688 0.95534 1.69869 1.44851 1.40136 0.98024 0.86882 0.80584 0.83639 0.77407 1.20311 1.22146 1.18737 1.46271 1.64042 1.14204 1.09565 1.21023 0.78908 0.87584 0.85426 1.90639 1.51625 1.15826 1.85034 1.21813 0.89986 0.89719 0.92916 1.21713 0.95637 1.01053 1.00762 1.21929 0.98308 0.98363 0.97702 1.21643 0.95626 0.97703 1.01563 1.22171 0.98837 0.97588 1.00532 1.22774 0.87560 0.97802 0.94726 1.87944 1.31128 1.32954 1.76606 0.93478 0.94598 0.92770 0.92301 0.76603 0.90614 0.90959 0.91198 0.90902 0.89951 0.90679 0.91628 0.90938 0.91380 0.91587 0.88470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.64 8.96 37.16 0.33 -3.30 16 2 C 0.23 5.66 2.15 -69.09 -0.15 5.51 16 3 H 0.05 1.24 6.63 -51.93 -0.34 0.89 16 4 C -0.53 -14.49 9.31 -34.44 -0.32 -14.81 16 5 H 0.08 2.30 7.98 -52.49 -0.42 1.88 16 6 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 7 N -0.89 -26.44 13.96 55.43 0.77 -25.66 16 8 Si 0.89 21.87 24.37 -169.99 -4.14 17.73 16 9 H -0.28 -6.62 6.88 56.52 0.39 -6.23 16 10 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 11 H -0.26 -6.46 6.52 56.52 0.37 -6.09 16 12 N -0.69 -14.22 4.13 -54.94 -0.23 -14.45 16 13 C 0.49 9.37 4.78 -10.99 -0.05 9.32 16 14 O -0.55 -12.27 14.80 5.55 0.08 -12.19 16 15 C 0.10 1.50 1.04 -91.73 -0.10 1.40 16 16 C -0.13 -1.71 8.83 37.15 0.33 -1.38 16 17 C -0.12 -1.70 4.58 -26.59 -0.12 -1.82 16 18 C -0.13 -1.76 5.75 -26.55 -0.15 -1.91 16 19 C -0.15 -1.92 6.14 -26.59 -0.16 -2.09 16 20 C 0.05 0.69 6.48 37.21 0.24 0.93 16 21 O -0.37 -5.56 9.58 -35.23 -0.34 -5.90 16 22 H 0.05 1.10 3.29 -51.93 -0.17 0.93 16 23 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 25 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 26 H 0.40 7.69 7.96 -40.82 -0.32 7.37 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.08 1.16 7.78 -51.93 -0.40 0.75 16 32 H 0.07 1.26 6.72 -51.93 -0.35 0.91 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 1.13 6.51 -51.93 -0.34 0.79 16 37 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 287.40 15.07 4.33 4.33 Total: -1.00 -30.51 287.40 -5.53 -36.03 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -5.76 Total: 6.16 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: -0.25 Total: -6.05 kcal Atomic # 7 Polarization: -40.66 SS G_CDS: 0.55 Total: -40.11 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -0.26 Total: -18.09 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.14 Total: 17.73 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.51 -5.53 -36.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334579636.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.895 kcal (2) G-P(sol) polarization free energy of solvation -30.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds