Wall clock time and date at job start Thu Apr 9 2020 12:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.46998 * 2 1 4 4 C 1.37100 * 120.00238 * 276.12336 * 3 2 1 5 5 H 1.08004 * 119.99891 * 191.07003 * 4 3 2 6 6 C 1.38952 * 120.00081 * 11.07517 * 4 3 2 7 7 N 1.31414 * 119.99692 * 349.56784 * 6 4 3 8 8 Si 1.86792 * 120.00398 * 169.56803 * 6 4 3 9 9 H 1.48506 * 109.46875 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47243 * 119.99881 * 8 6 4 11 11 H 1.48496 * 109.47216 * 240.00105 * 8 6 4 12 12 C 1.34779 * 120.00216 * 95.84928 * 3 2 1 13 13 O 1.21303 * 119.99489 * 5.47239 * 12 3 2 14 14 C 1.50698 * 120.00463 * 185.47571 * 12 3 2 15 15 H 1.09004 * 109.54030 * 323.86588 * 14 12 3 16 16 C 1.53168 * 109.54474 * 84.13552 * 14 12 3 17 17 C 1.53092 * 109.16567 * 176.84991 * 16 14 12 18 18 O 1.42909 * 109.41338 * 302.39126 * 17 16 14 19 19 C 1.42907 * 114.09740 * 61.15479 * 18 17 16 20 20 H 1.09002 * 109.48640 * 58.83078 * 19 18 17 21 21 C 1.52995 * 109.47795 * 178.86269 * 19 18 17 22 22 C 1.53089 * 109.41239 * 298.84383 * 19 18 17 23 23 H 1.09001 * 109.47340 * 52.94169 * 1 2 3 24 24 H 1.08999 * 109.47195 * 172.95268 * 1 2 3 25 25 H 1.09008 * 109.46931 * 292.94557 * 1 2 3 26 26 H 1.08995 * 109.46885 * 240.00242 * 2 1 3 27 27 H 1.08992 * 109.47252 * 120.00057 * 2 1 3 28 28 H 0.96993 * 120.00340 * 180.02562 * 7 6 4 29 29 H 1.09002 * 109.52383 * 296.75499 * 16 14 12 30 30 H 1.09001 * 109.52784 * 56.94287 * 16 14 12 31 31 H 1.08993 * 109.48572 * 182.40609 * 17 16 14 32 32 H 1.09003 * 109.48980 * 62.37755 * 17 16 14 33 33 H 1.09005 * 109.46755 * 179.97438 * 21 19 18 34 34 H 1.09004 * 109.46944 * 299.93954 * 21 19 18 35 35 H 1.09000 * 109.47530 * 59.94154 * 21 19 18 36 36 H 1.09000 * 109.52365 * 297.69814 * 22 19 18 37 37 H 1.09010 * 109.56944 * 177.54721 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1274 2.0698 -1.1805 5 1 2.6499 3.0146 -1.2083 6 6 1.5657 1.5521 -2.3413 7 7 1.1122 0.3188 -2.3583 8 14 1.4552 2.6091 -3.8774 9 1 2.0311 3.9493 -3.5985 10 1 2.2139 1.9631 -4.9784 11 1 0.0323 2.7556 -4.2762 12 6 2.3551 1.9770 1.1611 13 8 2.3490 1.3402 2.1935 14 6 2.7392 3.4341 1.1768 15 1 3.2942 3.6746 0.2701 16 6 1.4754 4.2964 1.2502 17 6 1.8775 5.7705 1.3450 18 8 2.7124 5.9624 2.4889 19 6 3.9313 5.2172 2.4533 20 1 4.5027 5.4968 1.5682 21 6 4.7522 5.5215 3.7079 22 6 3.6115 3.7209 2.4029 23 1 -0.3634 0.6193 -0.8201 24 1 -0.3633 -1.0199 -0.1261 25 1 -0.3633 0.4007 0.9464 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 0.7205 -0.0428 -3.1686 29 1 0.8749 4.1396 0.3541 30 1 0.8960 4.0195 2.1310 31 1 0.9830 6.3859 1.4405 32 1 2.4219 6.0576 0.4454 33 1 5.6816 4.9527 3.6808 34 1 4.9797 6.5870 3.7436 35 1 4.1804 5.2423 4.5929 36 1 3.0754 3.4323 3.3070 37 1 4.5384 3.1516 2.3317 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334915180.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:27 Heat of formation + Delta-G solvation = -81.183890 kcal Electronic energy + Delta-G solvation = -18592.982274 eV Core-core repulsion = 15756.521956 eV Total energy + Delta-G solvation = -2836.460318 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.57853 -37.99790 -35.14627 -33.02858 -32.48244 -31.43512 -29.65320 -27.48772 -24.96931 -24.39386 -22.39953 -21.47775 -19.92350 -19.01685 -16.83372 -16.26608 -15.98053 -15.31757 -14.54828 -14.34159 -14.13148 -13.99022 -13.52113 -12.74976 -12.66764 -12.37175 -12.23518 -12.12019 -11.65434 -11.52696 -11.39382 -11.06705 -10.91038 -10.78568 -10.66762 -10.48665 -10.18286 -10.13964 -9.86884 -9.75972 -9.27372 -8.91078 -8.21783 -7.78970 -6.23268 -3.93066 3.05218 3.16266 3.18518 3.87284 4.01921 4.04861 4.71134 4.99766 5.22433 5.24345 5.35243 5.47168 5.53160 5.66959 5.78937 5.85380 5.90390 6.00445 6.19049 6.26392 6.33778 6.37981 6.50079 6.64618 6.69004 6.79871 6.86726 6.89404 7.09770 7.31552 7.53109 7.55674 7.69954 7.87651 8.47409 9.05650 9.55925 9.95024 10.60018 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.025668 B = 0.008334 C = 0.006977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.575543 B = 3358.980430 C = 4012.143694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.119 3.881 3 N -0.442 5.442 4 C -0.324 4.324 5 H 0.099 0.901 6 C 0.032 3.968 7 N -0.866 5.866 8 Si 0.921 3.079 9 H -0.269 1.269 10 H -0.282 1.282 11 H -0.280 1.280 12 C 0.458 3.542 13 O -0.611 6.611 14 C -0.092 4.092 15 H 0.085 0.915 16 C -0.138 4.138 17 C 0.066 3.934 18 O -0.386 6.386 19 C 0.086 3.914 20 H 0.054 0.946 21 C -0.142 4.142 22 C -0.128 4.128 23 H 0.071 0.929 24 H 0.036 0.964 25 H 0.015 0.985 26 H 0.121 0.879 27 H 0.034 0.966 28 H 0.265 0.735 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.049 0.951 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.576 7.800 2.547 8.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.003 4.003 3 N -0.159 5.159 4 C -0.452 4.452 5 H 0.117 0.883 6 C -0.171 4.171 7 N -0.506 5.506 8 Si 0.748 3.252 9 H -0.194 1.194 10 H -0.208 1.208 11 H -0.206 1.206 12 C 0.247 3.753 13 O -0.498 6.498 14 C -0.113 4.113 15 H 0.103 0.897 16 C -0.176 4.176 17 C -0.011 4.011 18 O -0.305 6.305 19 C 0.028 3.972 20 H 0.072 0.928 21 C -0.199 4.199 22 C -0.166 4.166 23 H 0.089 0.911 24 H 0.055 0.945 25 H 0.034 0.966 26 H 0.138 0.862 27 H 0.053 0.947 28 H 0.076 0.924 29 H 0.102 0.898 30 H 0.087 0.913 31 H 0.108 0.892 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.427 7.441 3.014 8.387 hybrid contribution -0.157 0.198 -1.268 1.293 sum 2.269 7.639 1.746 8.158 Atomic orbital electron populations 1.21908 0.97403 0.99944 0.99290 1.21651 0.93910 0.83262 1.01499 1.43868 1.55065 1.11949 1.05029 1.19759 1.34679 1.05212 0.85569 0.88317 1.25253 0.96300 0.96145 0.99405 1.70126 1.39627 1.12812 1.28049 0.85948 0.78179 0.79865 0.81212 1.19383 1.20753 1.20559 1.19927 0.83279 0.88540 0.83592 1.90507 1.60389 1.66097 1.32855 1.21073 0.96957 0.94476 0.98832 0.89677 1.22010 0.97758 0.94299 1.03540 1.22560 0.94133 0.96112 0.88303 1.87853 1.31815 1.67614 1.43248 1.22114 0.85595 0.91282 0.98188 0.92801 1.21741 0.99174 1.01707 0.97287 1.22033 1.00301 0.94875 0.99413 0.91054 0.94516 0.96559 0.86176 0.94739 0.92374 0.89773 0.91330 0.89164 0.93316 0.91257 0.92305 0.91864 0.90333 0.91356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 9.36 37.16 0.35 -2.65 16 2 C 0.12 3.01 5.51 -4.04 -0.02 2.98 16 3 N -0.44 -11.20 2.64 -114.81 -0.30 -11.50 16 4 C -0.32 -7.97 9.11 -14.93 -0.14 -8.11 16 5 H 0.10 2.29 5.80 -52.48 -0.30 1.99 16 6 C 0.03 0.77 5.05 -17.47 -0.09 0.68 16 7 N -0.87 -21.52 7.69 55.50 0.43 -21.09 16 8 Si 0.92 18.87 29.57 -169.99 -5.03 13.84 16 9 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 10 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 11 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 12 C 0.46 11.25 6.76 -10.99 -0.07 11.18 16 13 O -0.61 -16.62 15.50 5.54 0.09 -16.54 16 14 C -0.09 -1.84 1.90 -91.59 -0.17 -2.01 16 15 H 0.09 1.67 6.21 -51.93 -0.32 1.35 16 16 C -0.14 -2.49 5.40 -26.60 -0.14 -2.64 16 17 C 0.07 0.99 6.84 37.20 0.25 1.25 16 18 O -0.39 -6.27 10.41 -35.23 -0.37 -6.64 16 19 C 0.09 1.30 3.26 -26.69 -0.09 1.21 16 20 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 21 C -0.14 -1.76 9.56 37.16 0.36 -1.41 16 22 C -0.13 -2.30 4.28 -26.59 -0.11 -2.41 16 23 H 0.07 1.77 6.31 -51.93 -0.33 1.45 16 24 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.02 0.37 8.14 -51.92 -0.42 -0.06 16 26 H 0.12 3.15 5.70 -51.93 -0.30 2.85 16 27 H 0.03 0.88 7.20 -51.93 -0.37 0.51 16 28 H 0.26 6.26 8.31 -40.82 -0.34 5.92 16 29 H 0.08 1.57 7.99 -51.93 -0.41 1.15 16 30 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.08 1.54 7.77 -51.93 -0.40 1.14 16 37 H 0.07 1.20 8.14 -51.92 -0.42 0.78 16 LS Contribution 290.85 15.07 4.38 4.38 Total: -1.00 -28.10 290.85 -6.49 -34.59 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -5.80 Total: 4.89 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: 0.12 Total: -1.92 kcal Atomic # 7 Polarization: -32.71 SS G_CDS: 0.12 Total: -32.59 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -0.28 Total: -23.18 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.10 -6.49 -34.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334915180.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.598 kcal (2) G-P(sol) polarization free energy of solvation -28.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds