Wall clock time and date at job start Thu Apr 9 2020 12:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47177 * 2 1 4 4 O 1.42903 * 109.46709 * 239.99538 * 2 1 3 5 5 C 1.50701 * 109.47086 * 120.00439 * 2 1 3 6 6 O 1.21280 * 120.00217 * 112.30908 * 5 2 1 7 7 N 1.34779 * 119.99957 * 292.30959 * 5 2 1 8 8 C 1.46930 * 120.62850 * 355.27432 * 7 5 2 9 9 C 1.53191 * 108.77296 * 233.58490 * 8 7 5 10 10 C 1.53033 * 109.31464 * 305.36397 * 9 8 7 11 11 C 1.53000 * 109.46265 * 181.38601 * 10 9 8 12 12 C 1.50700 * 109.47207 * 64.93338 * 11 10 9 13 13 H 1.08002 * 119.99569 * 359.97438 * 12 11 10 14 14 C 1.37872 * 120.00314 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99609 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00364 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46776 * 89.99926 * 16 14 12 18 18 H 1.48497 * 109.47197 * 210.00168 * 16 14 12 19 19 H 1.48499 * 109.46731 * 330.00325 * 16 14 12 20 20 C 1.53045 * 109.53767 * 61.36433 * 10 9 8 21 21 C 1.46921 * 120.63362 * 175.24839 * 7 5 2 22 22 H 1.09004 * 109.47321 * 66.34347 * 1 2 3 23 23 H 1.08993 * 109.47470 * 186.34827 * 1 2 3 24 24 H 1.09006 * 109.46777 * 306.34381 * 1 2 3 25 25 H 0.96705 * 113.99560 * 60.00634 * 4 2 1 26 26 H 1.08998 * 109.58590 * 353.37316 * 8 7 5 27 27 H 1.09004 * 109.58894 * 113.79808 * 8 7 5 28 28 H 1.09007 * 109.49854 * 65.31670 * 9 8 7 29 29 H 1.09004 * 109.49725 * 185.41088 * 9 8 7 30 30 H 1.09000 * 109.46343 * 301.34729 * 10 9 8 31 31 H 1.08999 * 109.47435 * 184.93166 * 11 10 9 32 32 H 1.09002 * 109.47038 * 304.93277 * 11 10 9 33 33 H 0.97010 * 119.99671 * 180.02562 * 15 14 12 34 34 H 1.09004 * 109.49816 * 178.68360 * 20 10 9 35 35 H 1.09001 * 109.52205 * 58.60292 * 20 10 9 36 36 H 1.09004 * 109.58717 * 246.20266 * 21 7 5 37 37 H 1.09000 * 109.58563 * 6.48426 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6738 -1.1668 5 6 2.0323 -0.7105 1.2304 6 8 2.6104 -1.7714 1.1246 7 7 1.8392 -0.1669 2.4485 8 6 1.2336 1.1646 2.5866 9 6 2.1567 2.0400 3.4400 10 6 2.4356 1.3355 4.7696 11 6 3.3294 2.2223 5.6388 12 6 2.5864 3.4822 6.0016 13 1 1.5777 3.6352 5.6473 14 6 3.1946 4.4399 6.7850 15 7 4.4231 4.2537 7.2160 16 14 2.2739 6.0020 7.2341 17 1 1.5319 5.7916 8.5031 18 1 3.2417 7.1152 7.4053 19 1 1.3162 6.3408 6.1510 20 6 3.1417 0.0037 4.5049 21 6 2.2297 -0.8948 3.6636 22 1 -0.3634 0.4124 -0.9413 23 1 -0.3634 -1.0213 0.1136 24 1 -0.3633 0.6091 0.8278 25 1 1.7209 -0.2702 -1.9980 26 1 1.1115 1.6144 1.6013 27 1 0.2621 1.0756 3.0728 28 1 3.0956 2.2028 2.9106 29 1 1.6749 2.9990 3.6305 30 1 1.4943 1.1508 5.2872 31 1 3.5999 1.6855 6.5480 32 1 4.2331 2.4797 5.0863 33 1 4.8510 4.9275 7.7675 34 1 3.3609 -0.4867 5.4534 35 1 4.0714 0.1852 3.9657 36 1 1.3394 -1.1518 4.2376 37 1 2.7627 -1.8051 3.3888 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335502284.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:40 Heat of formation + Delta-G solvation = -103.135984 kcal Electronic energy + Delta-G solvation = -17899.260726 eV Core-core repulsion = 15061.848494 eV Total energy + Delta-G solvation = -2837.412232 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.24509 -37.68976 -36.55306 -34.11931 -32.40612 -31.40267 -30.23413 -28.06142 -25.34285 -23.87608 -22.91119 -21.60904 -19.89578 -18.73112 -17.86922 -16.42413 -16.31834 -15.80935 -15.46584 -14.60137 -14.37352 -14.03869 -13.69701 -13.49924 -12.92026 -12.88480 -12.67583 -12.49226 -12.20898 -11.88164 -11.73173 -11.21717 -11.00136 -10.84410 -10.72189 -10.49635 -10.35804 -10.14764 -9.75220 -9.48059 -9.28607 -9.00104 -8.40031 -8.36828 -6.02753 -4.05167 2.66906 2.90751 3.28382 3.35416 3.36833 4.16634 4.42194 4.46926 4.67510 4.82794 5.07659 5.29334 5.31555 5.37416 5.42482 5.44840 5.50985 5.62704 5.70009 5.83864 5.95553 6.04019 6.34028 6.34931 6.48723 6.64171 6.92075 6.95378 7.07193 7.34325 7.54613 7.63872 7.78442 7.96790 8.27191 8.38669 9.01363 9.58818 11.08470 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.038482 B = 0.005238 C = 0.004868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.443023 B = 5344.489566 C = 5750.091499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.085 3.915 3 H 0.082 0.918 4 O -0.544 6.544 5 C 0.518 3.482 6 O -0.531 6.531 7 N -0.603 5.603 8 C 0.100 3.900 9 C -0.120 4.120 10 C -0.081 4.081 11 C 0.027 3.973 12 C -0.517 4.517 13 H 0.056 0.944 14 C 0.057 3.943 15 N -0.895 5.895 16 Si 0.889 3.111 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C -0.130 4.130 21 C 0.113 3.887 22 H 0.070 0.930 23 H 0.068 0.932 24 H 0.077 0.923 25 H 0.381 0.619 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.086 0.914 30 H 0.059 0.941 31 H 0.016 0.984 32 H 0.015 0.985 33 H 0.260 0.740 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.568 -5.499 -12.351 16.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.023 3.977 3 H 0.099 0.901 4 O -0.348 6.348 5 C 0.305 3.695 6 O -0.407 6.407 7 N -0.338 5.338 8 C -0.023 4.023 9 C -0.158 4.158 10 C -0.099 4.099 11 C -0.010 4.010 12 C -0.555 4.555 13 H 0.074 0.926 14 C -0.144 4.144 15 N -0.534 5.534 16 Si 0.717 3.283 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.168 4.168 21 C -0.009 4.009 22 H 0.089 0.911 23 H 0.087 0.913 24 H 0.096 0.904 25 H 0.228 0.772 26 H 0.095 0.905 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.104 0.896 30 H 0.077 0.923 31 H 0.034 0.966 32 H 0.034 0.966 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.841 -6.382 -11.861 15.585 hybrid contribution -0.716 1.482 0.004 1.646 sum -8.557 -4.899 -11.856 15.421 Atomic orbital electron populations 1.22513 0.94156 1.03854 1.03600 1.21569 0.94286 0.95739 0.86091 0.90063 1.86626 1.76553 1.56780 1.14881 1.20125 0.79542 0.85745 0.84094 1.90681 1.41166 1.22844 1.85986 1.48079 1.61536 1.18769 1.05451 1.22075 0.97156 0.82156 1.00869 1.21925 0.99108 0.98852 0.95956 1.21190 0.99634 0.93588 0.95509 1.19129 0.94382 0.93489 0.93997 1.21227 1.00162 1.02951 1.31205 0.92609 1.25025 0.94874 0.98416 0.96134 1.69969 1.12631 1.35060 1.35749 0.86642 0.79582 0.83208 0.78832 1.20731 1.21307 1.19926 1.22030 0.98607 0.96905 0.99234 1.21680 0.98966 0.95714 0.84508 0.91109 0.91326 0.90385 0.77202 0.90479 0.91265 0.92203 0.89554 0.92283 0.96553 0.96615 0.93021 0.91035 0.92014 0.91697 0.89637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.58 9.21 37.16 0.34 -1.24 16 2 C 0.09 0.99 3.15 -27.88 -0.09 0.90 16 3 H 0.08 0.80 7.06 -51.93 -0.37 0.43 16 4 O -0.54 -6.64 12.86 -55.02 -0.71 -7.35 16 5 C 0.52 8.17 7.06 -10.98 -0.08 8.09 16 6 O -0.53 -10.57 15.93 -14.24 -0.23 -10.80 16 7 N -0.60 -8.83 2.97 -172.77 -0.51 -9.35 16 8 C 0.10 1.28 5.11 -3.71 -0.02 1.26 16 9 C -0.12 -1.99 5.19 -26.62 -0.14 -2.13 16 10 C -0.08 -1.52 2.10 -90.58 -0.19 -1.71 16 11 C 0.03 0.66 4.45 -27.88 -0.12 0.54 16 12 C -0.52 -13.76 8.39 -34.44 -0.29 -14.05 16 13 H 0.06 1.42 7.05 -52.49 -0.37 1.05 16 14 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 15 N -0.89 -26.34 13.29 55.43 0.74 -25.61 16 16 Si 0.89 20.93 29.54 -169.99 -5.02 15.90 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 20 C -0.13 -2.18 5.36 -26.61 -0.14 -2.33 16 21 C 0.11 1.71 6.44 -3.72 -0.02 1.68 16 22 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.08 0.62 6.11 -51.93 -0.32 0.30 16 25 H 0.38 2.40 9.08 45.56 0.41 2.82 16 26 H 0.08 0.79 4.95 -51.93 -0.26 0.53 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.09 1.50 6.91 -51.93 -0.36 1.14 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 34 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.09 1.36 7.00 -51.93 -0.36 0.99 16 LS Contribution 295.70 15.07 4.46 4.46 Total: -1.00 -33.49 295.70 -7.11 -40.60 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -4.98 Total: -0.35 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: -0.85 Total: -7.51 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: 0.22 Total: -34.95 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.93 Total: -18.14 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -33.49 -7.11 -40.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335502284.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.540 kcal (2) G-P(sol) polarization free energy of solvation -33.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds