Wall clock time and date at job start Thu Apr 9 2020 12:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.47293 * 2 1 4 4 C 1.37104 * 119.99660 * 88.62530 * 3 2 1 5 5 H 1.07998 * 119.99777 * 166.99498 * 4 3 2 6 6 C 1.38952 * 119.99926 * 346.99932 * 4 3 2 7 7 N 1.31410 * 119.99956 * 4.84067 * 6 4 3 8 8 Si 1.86798 * 119.99946 * 184.84398 * 6 4 3 9 9 H 1.48501 * 109.47198 * 59.99937 * 8 6 4 10 10 H 1.48501 * 109.47358 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47272 * 300.00014 * 8 6 4 12 12 C 1.34768 * 120.00524 * 268.35168 * 3 2 1 13 13 O 1.21288 * 120.00580 * 171.93375 * 12 3 2 14 14 C 1.50703 * 119.99738 * 351.93422 * 12 3 2 15 15 O 1.42898 * 109.46991 * 47.38113 * 14 12 3 16 16 C 1.52991 * 109.47268 * 287.37571 * 14 12 3 17 17 C 1.53003 * 109.47279 * 179.97438 * 16 14 12 18 18 C 1.53006 * 109.46857 * 60.00109 * 17 16 14 19 19 C 1.53005 * 109.47057 * 299.99827 * 18 17 16 20 20 C 1.52996 * 109.46873 * 60.00254 * 19 18 17 21 21 H 1.09000 * 109.47240 * 60.14335 * 1 2 3 22 22 H 1.08998 * 109.47005 * 180.14732 * 1 2 3 23 23 H 1.09003 * 109.47114 * 300.14590 * 1 2 3 24 24 H 1.09005 * 109.47306 * 240.00737 * 2 1 3 25 25 H 1.08998 * 109.47655 * 120.00483 * 2 1 3 26 26 H 0.97005 * 119.99981 * 180.02562 * 7 6 4 27 27 H 0.96704 * 113.99758 * 271.36132 * 15 14 12 28 28 H 1.08996 * 109.47105 * 299.99904 * 16 14 12 29 29 H 1.08996 * 109.47169 * 60.00358 * 16 14 12 30 30 H 1.09001 * 109.47539 * 300.00518 * 17 16 14 31 31 H 1.08994 * 109.47511 * 179.97438 * 17 16 14 32 32 H 1.09004 * 109.47060 * 180.02562 * 18 17 16 33 33 H 1.08996 * 109.47367 * 60.00116 * 18 17 16 34 34 H 1.08996 * 109.47268 * 300.00350 * 19 18 17 35 35 H 1.08996 * 109.47139 * 179.97438 * 19 18 17 36 36 H 1.09003 * 109.47120 * 179.97438 * 20 19 18 37 37 H 1.09005 * 109.47221 * 59.99825 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2200 2.0370 1.1871 5 1 2.7712 2.9655 1.2041 6 6 1.7152 1.5068 2.3681 7 7 1.1279 0.3313 2.3624 8 14 1.8715 2.4650 3.9639 9 1 1.1736 3.7688 3.8288 10 1 1.2575 1.6878 5.0703 11 1 3.3073 2.7007 4.2613 12 6 2.2747 2.0054 -1.1666 13 8 2.5372 3.1895 -1.1760 14 6 2.2350 1.2321 -2.4595 15 8 1.0449 0.4425 -2.5059 16 6 3.4581 0.3169 -2.5441 17 6 3.4175 -0.4686 -3.8564 18 6 3.4279 0.5068 -5.0352 19 6 2.2047 1.4221 -4.9506 20 6 2.2454 2.2076 -3.6383 21 1 -0.3634 0.5116 -0.8913 22 1 -0.3633 -1.0276 0.0026 23 1 -0.3633 0.5161 0.8887 24 1 1.8933 -0.5137 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 0.7752 -0.0387 3.1868 27 1 1.1403 -0.4360 -2.1131 28 1 4.3658 0.9193 -2.5087 29 1 3.4504 -0.3783 -1.7046 30 1 2.5097 -1.0711 -3.8914 31 1 4.2890 -1.1203 -3.9169 32 1 3.3986 -0.0528 -5.9701 33 1 4.3356 1.1092 -5.0003 34 1 1.2971 0.8196 -4.9855 35 1 2.2124 2.1172 -5.7900 36 1 1.3742 2.8599 -3.5782 37 1 3.1531 2.8100 -3.6033 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336259202.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:57 Heat of formation + Delta-G solvation = -72.753557 kcal Electronic energy + Delta-G solvation = -19133.726066 eV Core-core repulsion = 16297.631315 eV Total energy + Delta-G solvation = -2836.094751 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.99866 -37.20274 -35.42607 -34.44007 -31.53919 -30.47255 -29.61106 -29.24750 -25.17868 -22.95520 -22.35587 -21.78468 -19.66575 -19.14254 -17.03792 -16.19769 -16.04058 -15.29808 -14.53575 -14.24433 -13.84898 -13.69651 -13.26371 -12.81769 -12.66915 -12.54141 -12.05418 -11.92212 -11.61405 -11.31708 -11.21606 -10.96362 -10.76817 -10.75277 -10.53721 -10.36474 -10.28407 -10.19360 -9.92403 -9.80101 -9.54735 -8.80750 -8.08082 -7.68020 -6.15185 -3.82319 3.17865 3.24483 3.29104 3.79381 4.12135 4.77968 4.84320 4.99303 5.01778 5.20402 5.20992 5.49275 5.58658 5.65873 5.75677 5.80525 5.85928 6.00641 6.10622 6.22681 6.29056 6.37369 6.41999 6.53065 6.63357 6.78273 6.80303 6.86810 6.91319 7.44123 7.62256 7.80047 8.11502 8.15071 8.57440 9.20053 9.48085 10.00565 10.69331 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.040260 B = 0.007799 C = 0.007271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.311843 B = 3589.247189 C = 3850.225880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.111 3.889 3 N -0.437 5.437 4 C -0.294 4.294 5 H 0.099 0.901 6 C 0.024 3.976 7 N -0.880 5.880 8 Si 0.930 3.070 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.275 1.275 12 C 0.429 3.571 13 O -0.592 6.592 14 C 0.134 3.866 15 O -0.555 6.555 16 C -0.149 4.149 17 C -0.115 4.115 18 C -0.118 4.118 19 C -0.116 4.116 20 C -0.088 4.088 21 H 0.040 0.960 22 H 0.032 0.968 23 H 0.079 0.921 24 H 0.023 0.977 25 H 0.122 0.878 26 H 0.265 0.735 27 H 0.375 0.625 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.110 -5.212 -8.939 10.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.011 4.011 3 N -0.155 5.155 4 C -0.422 4.422 5 H 0.117 0.883 6 C -0.177 4.177 7 N -0.522 5.522 8 Si 0.757 3.243 9 H -0.200 1.200 10 H -0.209 1.209 11 H -0.200 1.200 12 C 0.217 3.783 13 O -0.478 6.478 14 C 0.090 3.910 15 O -0.366 6.366 16 C -0.187 4.187 17 C -0.152 4.152 18 C -0.156 4.156 19 C -0.154 4.154 20 C -0.126 4.126 21 H 0.059 0.941 22 H 0.052 0.948 23 H 0.098 0.902 24 H 0.041 0.959 25 H 0.140 0.860 26 H 0.076 0.924 27 H 0.228 0.772 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.915 -4.251 -9.038 10.170 hybrid contribution 0.172 -0.197 1.206 1.234 sum 2.087 -4.448 -7.832 9.245 Atomic orbital electron populations 1.22236 0.96492 0.99492 1.02205 1.22038 0.94960 0.83657 1.00488 1.43788 1.55333 1.11859 1.04555 1.19744 1.32169 1.06966 0.83272 0.88319 1.25278 0.96232 0.96502 0.99669 1.70011 1.38840 1.15834 1.27492 0.85935 0.78556 0.79395 0.80423 1.20011 1.20926 1.20038 1.20552 0.84692 0.87956 0.85121 1.90495 1.55140 1.15465 1.86651 1.21206 0.84844 0.90975 0.94000 1.86613 1.35104 1.30630 1.84212 1.22319 0.99014 0.99058 0.98263 1.21488 1.01738 0.97727 0.94279 1.21542 0.98671 0.97720 0.97653 1.21509 0.98498 0.98331 0.97052 1.21286 1.03193 0.96471 0.91691 0.94068 0.94848 0.90208 0.95898 0.86020 0.92424 0.77244 0.90738 0.90725 0.91633 0.92092 0.92403 0.92224 0.91268 0.92438 0.91317 0.90574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.16 8.77 37.16 0.33 -2.84 16 2 C 0.11 2.47 4.61 -4.04 -0.02 2.45 16 3 N -0.44 -11.22 2.62 -114.81 -0.30 -11.52 16 4 C -0.29 -8.18 9.46 -14.93 -0.14 -8.32 16 5 H 0.10 2.90 7.31 -52.49 -0.38 2.51 16 6 C 0.02 0.62 5.36 -17.47 -0.09 0.52 16 7 N -0.88 -22.25 7.49 55.50 0.42 -21.84 16 8 Si 0.93 20.81 29.56 -169.99 -5.02 15.78 16 9 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 12 C 0.43 10.77 6.62 -10.99 -0.07 10.70 16 13 O -0.59 -16.89 15.66 5.55 0.09 -16.80 16 14 C 0.13 2.59 0.66 -91.77 -0.06 2.53 16 15 O -0.55 -10.30 9.01 -35.23 -0.32 -10.62 16 16 C -0.15 -2.42 4.49 -26.73 -0.12 -2.55 16 17 C -0.11 -1.48 5.78 -26.73 -0.15 -1.64 16 18 C -0.12 -1.47 5.92 -26.73 -0.16 -1.62 16 19 C -0.12 -1.63 5.78 -26.73 -0.15 -1.79 16 20 C -0.09 -1.59 4.32 -26.73 -0.12 -1.71 16 21 H 0.04 0.89 6.34 -51.93 -0.33 0.56 16 22 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.08 1.98 6.29 -51.93 -0.33 1.65 16 24 H 0.02 0.44 2.89 -51.93 -0.15 0.29 16 25 H 0.12 2.94 5.68 -51.93 -0.29 2.64 16 26 H 0.26 6.42 8.31 -40.82 -0.34 6.08 16 27 H 0.37 6.19 5.12 45.56 0.23 6.42 16 28 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.07 1.23 6.21 -51.93 -0.32 0.91 16 30 H 0.06 0.82 7.57 -51.93 -0.39 0.43 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 1.00 7.68 -51.93 -0.40 0.60 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 37 H 0.08 1.40 7.96 -51.93 -0.41 0.99 16 LS Contribution 275.78 15.07 4.16 4.16 Total: -1.00 -29.75 275.78 -6.62 -36.37 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -4.87 Total: 8.73 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: -0.76 Total: -4.26 kcal Atomic # 7 Polarization: -33.47 SS G_CDS: 0.11 Total: -33.36 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -0.23 Total: -27.42 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.75 -6.62 -36.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336259202.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.383 kcal (2) G-P(sol) polarization free energy of solvation -29.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds