Wall clock time and date at job start Thu Apr 9 2020 12:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.47293 * 2 1 4 4 C 1.37104 * 119.99660 * 88.62530 * 3 2 1 5 5 H 1.07998 * 119.99777 * 166.99498 * 4 3 2 6 6 C 1.38952 * 119.99926 * 346.99932 * 4 3 2 7 7 N 1.31410 * 119.99956 * 4.84067 * 6 4 3 8 8 Si 1.86798 * 119.99946 * 184.84398 * 6 4 3 9 9 H 1.48501 * 109.47198 * 59.99937 * 8 6 4 10 10 H 1.48501 * 109.47358 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47272 * 300.00014 * 8 6 4 12 12 C 1.34768 * 120.00524 * 268.35168 * 3 2 1 13 13 O 1.21288 * 120.00580 * 171.93375 * 12 3 2 14 14 C 1.50703 * 119.99738 * 351.93422 * 12 3 2 15 15 O 1.42898 * 109.46991 * 47.38113 * 14 12 3 16 16 C 1.52991 * 109.47268 * 287.37571 * 14 12 3 17 17 C 1.53003 * 109.47279 * 179.97438 * 16 14 12 18 18 C 1.53006 * 109.46857 * 60.00109 * 17 16 14 19 19 C 1.53005 * 109.47057 * 299.99827 * 18 17 16 20 20 C 1.52996 * 109.46873 * 60.00254 * 19 18 17 21 21 H 1.09000 * 109.47240 * 60.14335 * 1 2 3 22 22 H 1.08998 * 109.47005 * 180.14732 * 1 2 3 23 23 H 1.09003 * 109.47114 * 300.14590 * 1 2 3 24 24 H 1.09005 * 109.47306 * 240.00737 * 2 1 3 25 25 H 1.08998 * 109.47655 * 120.00483 * 2 1 3 26 26 H 0.97005 * 119.99981 * 180.02562 * 7 6 4 27 27 H 0.96704 * 113.99758 * 271.36132 * 15 14 12 28 28 H 1.08996 * 109.47105 * 299.99904 * 16 14 12 29 29 H 1.08996 * 109.47169 * 60.00358 * 16 14 12 30 30 H 1.09001 * 109.47539 * 300.00518 * 17 16 14 31 31 H 1.08994 * 109.47511 * 179.97438 * 17 16 14 32 32 H 1.09004 * 109.47060 * 180.02562 * 18 17 16 33 33 H 1.08996 * 109.47367 * 60.00116 * 18 17 16 34 34 H 1.08996 * 109.47268 * 300.00350 * 19 18 17 35 35 H 1.08996 * 109.47139 * 179.97438 * 19 18 17 36 36 H 1.09003 * 109.47120 * 179.97438 * 20 19 18 37 37 H 1.09005 * 109.47221 * 59.99825 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2200 2.0370 1.1871 5 1 2.7712 2.9655 1.2041 6 6 1.7152 1.5068 2.3681 7 7 1.1279 0.3313 2.3624 8 14 1.8715 2.4650 3.9639 9 1 1.1736 3.7688 3.8288 10 1 1.2575 1.6878 5.0703 11 1 3.3073 2.7007 4.2613 12 6 2.2747 2.0054 -1.1666 13 8 2.5372 3.1895 -1.1760 14 6 2.2350 1.2321 -2.4595 15 8 1.0449 0.4425 -2.5059 16 6 3.4581 0.3169 -2.5441 17 6 3.4175 -0.4686 -3.8564 18 6 3.4279 0.5068 -5.0352 19 6 2.2047 1.4221 -4.9506 20 6 2.2454 2.2076 -3.6383 21 1 -0.3634 0.5116 -0.8913 22 1 -0.3633 -1.0276 0.0026 23 1 -0.3633 0.5161 0.8887 24 1 1.8933 -0.5137 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 0.7752 -0.0387 3.1868 27 1 1.1403 -0.4360 -2.1131 28 1 4.3658 0.9193 -2.5087 29 1 3.4504 -0.3783 -1.7046 30 1 2.5097 -1.0711 -3.8914 31 1 4.2890 -1.1203 -3.9169 32 1 3.3986 -0.0528 -5.9701 33 1 4.3356 1.1092 -5.0003 34 1 1.2971 0.8196 -4.9855 35 1 2.2124 2.1172 -5.7900 36 1 1.3742 2.8599 -3.5782 37 1 3.1531 2.8100 -3.6033 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336259202.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:57 Heat of formation + Delta-G solvation = -92.130066 kcal Electronic energy + Delta-G solvation = -19134.566294 eV Core-core repulsion = 16297.631315 eV Total energy + Delta-G solvation = -2836.934980 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.63396 -38.85095 -37.33718 -35.92384 -33.51758 -31.73528 -31.30577 -30.81372 -27.10582 -24.53877 -23.65855 -23.44770 -21.19036 -20.61526 -18.99208 -17.95145 -17.58504 -16.98068 -16.28710 -15.71164 -15.55110 -15.27058 -14.75811 -14.50565 -14.25389 -13.97319 -13.61585 -13.34102 -13.15573 -13.09251 -12.76162 -12.69273 -12.54937 -12.28956 -12.11576 -12.03262 -11.79382 -11.60375 -11.41548 -11.36242 -10.92875 -10.74438 -9.97377 -9.66134 -8.14708 -5.91456 1.35380 1.39648 1.48859 1.93160 2.25198 3.00063 3.10603 3.43171 3.69744 3.75605 3.88444 4.18160 4.27545 4.34466 4.43937 4.53750 4.57211 4.71315 4.86466 4.97106 5.02756 5.07639 5.12422 5.19452 5.25650 5.27818 5.34557 5.37198 5.40859 5.59704 5.66572 5.92784 6.12342 6.57345 6.71703 7.16908 7.51199 8.03018 8.65436 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.040260 B = 0.007799 C = 0.007271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.311843 B = 3589.247189 C = 3850.225880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.113 3.887 3 N -0.446 5.446 4 C -0.342 4.342 5 H 0.067 0.933 6 C 0.000 4.000 7 N -0.874 5.874 8 Si 0.987 3.013 9 H -0.284 1.284 10 H -0.265 1.265 11 H -0.271 1.271 12 C 0.407 3.593 13 O -0.642 6.642 14 C 0.142 3.858 15 O -0.553 6.553 16 C -0.144 4.144 17 C -0.108 4.108 18 C -0.117 4.117 19 C -0.108 4.108 20 C -0.089 4.089 21 H 0.037 0.963 22 H 0.065 0.935 23 H 0.045 0.955 24 H 0.060 0.940 25 H 0.105 0.895 26 H 0.271 0.729 27 H 0.383 0.617 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.041 0.959 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.120 -7.448 -9.938 12.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.009 4.009 3 N -0.164 5.164 4 C -0.470 4.470 5 H 0.085 0.915 6 C -0.202 4.202 7 N -0.514 5.514 8 Si 0.811 3.189 9 H -0.210 1.210 10 H -0.189 1.189 11 H -0.197 1.197 12 C 0.197 3.803 13 O -0.531 6.531 14 C 0.098 3.902 15 O -0.365 6.365 16 C -0.182 4.182 17 C -0.146 4.146 18 C -0.154 4.154 19 C -0.145 4.145 20 C -0.127 4.127 21 H 0.056 0.944 22 H 0.084 0.916 23 H 0.064 0.936 24 H 0.078 0.922 25 H 0.123 0.877 26 H 0.082 0.918 27 H 0.238 0.762 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.060 0.940 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.909 -6.551 -10.037 12.136 hybrid contribution 0.127 0.502 1.577 1.660 sum 2.036 -6.049 -8.460 10.597 Atomic orbital electron populations 1.22077 0.95934 1.00950 1.00270 1.22084 0.95265 0.82049 1.01487 1.44047 1.55056 1.12993 1.04261 1.19649 1.34753 1.07328 0.85303 0.91466 1.25917 0.95267 0.97276 1.01701 1.70115 1.37210 1.15675 1.28437 0.85099 0.78600 0.77879 0.77308 1.21016 1.18884 1.19656 1.21774 0.83645 0.88021 0.86909 1.90438 1.57152 1.17840 1.87694 1.21066 0.86582 0.91427 0.91105 1.86619 1.34885 1.31100 1.83893 1.22292 0.96698 0.98475 1.00701 1.21511 1.03491 0.97622 0.91940 1.21569 0.97556 0.97479 0.98806 1.21480 0.99648 0.98551 0.94840 1.21292 1.01364 0.96356 0.93682 0.94404 0.91597 0.93592 0.92202 0.87728 0.91790 0.76245 0.91748 0.90971 0.90564 0.89535 0.89340 0.92152 0.91154 0.90651 0.94019 0.91796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.68 8.77 71.98 0.63 -5.05 16 2 C 0.11 4.95 4.61 86.38 0.40 5.35 16 3 N -0.45 -23.55 2.62 -635.54 -1.67 -25.22 16 4 C -0.34 -19.86 9.46 84.04 0.80 -19.07 16 5 H 0.07 4.22 7.31 -2.91 -0.02 4.20 16 6 C 0.00 -0.02 5.36 84.93 0.46 0.44 16 7 N -0.87 -43.89 7.49 21.66 0.16 -43.73 16 8 Si 0.99 42.93 29.56 68.60 2.03 44.96 16 9 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 10 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 11 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 12 C 0.41 21.19 6.62 87.66 0.58 21.77 16 13 O -0.64 -38.84 15.66 -3.06 -0.05 -38.88 16 14 C 0.14 5.48 0.66 -11.54 -0.01 5.48 16 15 O -0.55 -19.72 9.01 -148.98 -1.34 -21.06 16 16 C -0.14 -4.47 4.49 30.59 0.14 -4.33 16 17 C -0.11 -2.38 5.78 30.60 0.18 -2.20 16 18 C -0.12 -2.45 5.92 30.60 0.18 -2.27 16 19 C -0.11 -2.77 5.78 30.59 0.18 -2.59 16 20 C -0.09 -3.21 4.32 30.60 0.13 -3.08 16 21 H 0.04 1.60 6.34 -2.39 -0.02 1.59 16 22 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 23 H 0.05 2.26 6.29 -2.39 -0.02 2.24 16 24 H 0.06 2.16 2.89 -2.38 -0.01 2.15 16 25 H 0.11 4.99 5.68 -2.39 -0.01 4.98 16 26 H 0.27 12.81 8.31 -92.70 -0.77 12.04 16 27 H 0.38 11.65 5.12 -74.05 -0.38 11.27 16 28 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.07 2.25 6.21 -2.39 -0.01 2.24 16 30 H 0.08 1.56 7.57 -2.39 -0.02 1.54 16 31 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 33 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.07 1.81 7.68 -2.39 -0.02 1.79 16 35 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.06 2.42 7.96 -2.38 -0.02 2.40 16 Total: -1.00 -67.56 275.78 3.48 -64.07 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: 0.69 Total: 25.41 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: 3.66 Total: -5.55 kcal Atomic # 7 Polarization: -67.44 SS G_CDS: -1.51 Total: -68.95 kcal Atomic # 8 Polarization: -58.56 SS G_CDS: -1.39 Total: -59.95 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -67.56 3.48 -64.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336259202.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.057 kcal (2) G-P(sol) polarization free energy of solvation -67.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds