Wall clock time and date at job start Thu Apr 9 2020 12:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45196 * 109.46888 * 2 1 4 4 C 1.34228 * 116.99950 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00171 * 359.97438 * 4 3 2 6 6 C 1.50704 * 120.00198 * 179.97438 * 4 3 2 7 7 H 1.08996 * 110.42031 * 302.31688 * 6 4 3 8 8 C 1.54909 * 110.37053 * 64.62803 * 6 4 3 9 9 C 1.55140 * 101.65311 * 155.90092 * 8 6 4 10 10 C 1.54319 * 103.01846 * 324.34470 * 9 8 6 11 11 N 1.47443 * 107.23216 * 22.28221 * 10 9 8 12 12 C 1.46902 * 110.99742 * 123.25719 * 11 10 9 13 13 C 1.52997 * 109.47411 * 69.87295 * 12 11 10 14 14 C 1.50694 * 109.47460 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00179 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00472 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99350 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00608 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47326 * 270.00340 * 18 16 14 20 20 H 1.48506 * 109.46545 * 30.00090 * 18 16 14 21 21 H 1.48498 * 109.47210 * 149.99801 * 18 16 14 22 22 H 1.09007 * 109.46997 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47402 * 299.99900 * 1 2 3 24 24 H 1.08995 * 109.46802 * 60.00703 * 1 2 3 25 25 H 1.09000 * 109.47589 * 239.99346 * 2 1 3 26 26 H 1.09007 * 109.46804 * 119.99711 * 2 1 3 27 27 H 1.09004 * 110.99440 * 37.80999 * 8 6 4 28 28 H 1.09001 * 111.02389 * 274.00402 * 8 6 4 29 29 H 1.09003 * 110.70802 * 205.96791 * 9 8 6 30 30 H 1.08993 * 110.70653 * 82.73049 * 9 8 6 31 31 H 1.08998 * 109.88832 * 262.87806 * 10 9 8 32 32 H 1.09003 * 109.88908 * 141.68843 * 10 9 8 33 33 H 1.09003 * 109.47595 * 309.87238 * 12 11 10 34 34 H 1.08999 * 109.47491 * 189.87487 * 12 11 10 35 35 H 1.09005 * 109.46800 * 60.00408 * 13 12 11 36 36 H 1.08998 * 109.47382 * 300.00207 * 13 12 11 37 37 H 0.97005 * 119.99661 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9207 2.9375 0.0000 7 1 3.5618 3.4971 -0.8638 8 6 3.5511 3.6744 1.3115 9 6 4.6826 4.7315 1.4065 10 6 5.9077 3.9811 0.8430 11 7 5.3981 2.8834 0.0008 12 6 5.9290 2.9782 -1.3656 13 6 7.4241 2.6534 -1.3556 14 6 7.9686 2.7501 -2.7574 15 1 7.3138 3.0162 -3.5740 16 6 9.3027 2.4979 -2.9978 17 7 10.1000 2.1734 -2.0035 18 14 9.9776 2.6170 -4.7355 19 1 9.8632 1.2953 -5.4026 20 1 9.2011 3.6261 -5.4998 21 1 11.4046 3.0245 -4.6854 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 3.5797 2.9943 2.1629 28 1 2.5753 4.1532 1.2294 29 1 4.8523 5.0225 2.4432 30 1 4.4488 5.6023 0.7940 31 1 6.5025 3.5752 1.6613 32 1 6.5136 4.6591 0.2419 33 1 5.7795 3.9894 -1.7443 34 1 5.4075 2.2689 -2.0082 35 1 7.5736 1.6422 -0.9771 36 1 7.9457 3.3627 -0.7131 37 1 11.0385 1.9956 -2.1726 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001621752.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:48 Heat of formation + Delta-G solvation = -91.138439 kcal Electronic energy + Delta-G solvation = -17624.317972 eV Core-core repulsion = 14787.425992 eV Total energy + Delta-G solvation = -2836.891979 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.38657 -38.43928 -36.17997 -33.66915 -31.96506 -31.68069 -29.49331 -28.39513 -24.56046 -23.84296 -22.24445 -21.58571 -20.28893 -19.45863 -17.57568 -16.57661 -16.42192 -16.12286 -15.37974 -14.62036 -14.40797 -13.98864 -13.43875 -13.37143 -13.10108 -12.85952 -12.56278 -12.11447 -11.96166 -11.81508 -11.54133 -11.41882 -11.07411 -11.00533 -10.88077 -10.60246 -10.51282 -10.45035 -9.98633 -9.83460 -9.37984 -9.08645 -8.30171 -7.81398 -5.95055 -3.97572 2.53571 2.70845 3.35069 3.40823 3.43685 4.35076 4.52561 4.65003 4.72151 4.85353 4.91318 5.05982 5.12383 5.20908 5.33056 5.40839 5.55120 5.64726 5.66897 5.78567 5.82873 5.89002 5.93881 6.18116 6.20784 6.38893 6.46253 6.60760 6.97662 7.38279 7.44100 7.77881 7.94485 8.12282 8.14964 8.46954 9.09584 9.65590 11.16394 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.026189 B = 0.005472 C = 0.004793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.876527 B = 5115.623871 C = 5840.049396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.061 3.939 3 O -0.366 6.366 4 C 0.463 3.537 5 O -0.475 6.475 6 C 0.080 3.920 7 H 0.087 0.913 8 C -0.113 4.113 9 C -0.141 4.141 10 C 0.048 3.952 11 N -0.512 5.512 12 C 0.061 3.939 13 C 0.031 3.969 14 C -0.522 4.522 15 H 0.053 0.947 16 C 0.059 3.941 17 N -0.892 5.892 18 Si 0.892 3.108 19 H -0.280 1.280 20 H -0.275 1.275 21 H -0.286 1.286 22 H 0.076 0.924 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.025 0.975 34 H 0.058 0.942 35 H 0.027 0.973 36 H 0.017 0.983 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.806 2.145 6.707 19.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.013 4.013 3 O -0.284 6.284 4 C 0.303 3.697 5 O -0.358 6.358 6 C -0.030 4.030 7 H 0.105 0.895 8 C -0.151 4.151 9 C -0.180 4.180 10 C -0.079 4.079 11 N -0.237 5.237 12 C -0.065 4.065 13 C -0.007 4.007 14 C -0.561 4.561 15 H 0.071 0.929 16 C -0.143 4.143 17 N -0.531 5.531 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.199 1.199 21 H -0.212 1.212 22 H 0.095 0.905 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.043 0.957 34 H 0.077 0.923 35 H 0.045 0.955 36 H 0.036 0.964 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.227 1.286 6.936 18.615 hybrid contribution 0.272 0.493 -1.381 1.491 sum -16.954 1.779 5.555 17.929 Atomic orbital electron populations 1.21787 0.92920 1.02712 1.03311 1.22948 0.94996 0.80799 1.02585 1.86478 1.25165 1.31915 1.84873 1.23648 0.80024 0.92793 0.73215 1.90695 1.60063 1.42455 1.42631 1.22049 0.91553 0.89129 1.00317 0.89510 1.22625 0.99173 0.97524 0.95767 1.22845 0.95286 0.97884 1.01969 1.22823 0.96244 0.91424 0.97453 1.63117 1.01638 1.44854 1.14140 1.22554 1.00377 0.98214 0.85385 1.19053 0.87020 0.97923 0.96668 1.21179 0.94142 1.47125 0.93643 0.92865 1.24985 0.97089 0.95297 0.96887 1.69983 1.05106 1.47231 1.30813 0.86599 0.78140 0.78330 0.84943 1.20657 1.19948 1.21218 0.90477 0.91637 0.91583 0.91349 0.91428 0.90431 0.89947 0.90459 0.91191 0.90389 0.91403 0.95697 0.92349 0.95478 0.96450 0.93021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 10.29 37.16 0.38 -0.82 16 2 C 0.06 0.71 6.19 37.16 0.23 0.94 16 3 O -0.37 -5.17 10.22 -39.25 -0.40 -5.57 16 4 C 0.46 7.88 7.30 36.01 0.26 8.14 16 5 O -0.48 -9.96 16.23 -18.75 -0.30 -10.26 16 6 C 0.08 1.25 2.91 -67.34 -0.20 1.06 16 7 H 0.09 1.26 7.81 -51.93 -0.41 0.86 16 8 C -0.11 -1.37 6.48 -24.59 -0.16 -1.53 16 9 C -0.14 -1.70 6.94 -24.91 -0.17 -1.87 16 10 C 0.05 0.79 6.21 -2.84 -0.02 0.77 16 11 N -0.51 -9.89 4.34 -224.75 -0.97 -10.86 16 12 C 0.06 1.36 4.47 -3.82 -0.02 1.34 16 13 C 0.03 0.84 5.00 -27.89 -0.14 0.70 16 14 C -0.52 -15.22 9.11 -34.44 -0.31 -15.54 16 15 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 16 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -27.53 13.29 55.43 0.74 -26.79 16 18 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H 0.08 0.48 8.14 -51.92 -0.42 0.05 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.83 8.13 -51.93 -0.42 0.41 16 26 H 0.07 0.78 8.13 -51.93 -0.42 0.36 16 27 H 0.08 0.95 8.05 -51.93 -0.42 0.54 16 28 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 32 H 0.07 1.19 6.91 -51.93 -0.36 0.83 16 33 H 0.02 0.52 7.96 -51.93 -0.41 0.11 16 34 H 0.06 1.34 8.07 -51.93 -0.42 0.92 16 35 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.02 0.48 7.14 -51.93 -0.37 0.11 16 37 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 308.71 15.07 4.65 4.65 Total: -1.00 -33.50 308.71 -7.70 -41.21 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: -6.15 Total: -4.27 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -0.24 Total: -5.18 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: -0.24 Total: -37.65 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -0.71 Total: -15.83 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.50 -7.70 -41.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001621752.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.929 kcal (2) G-P(sol) polarization free energy of solvation -33.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds