Wall clock time and date at job start Thu Apr 9 2020 12:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45196 * 109.46888 * 2 1 4 4 C 1.34228 * 116.99950 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00171 * 359.97438 * 4 3 2 6 6 C 1.50704 * 120.00198 * 179.97438 * 4 3 2 7 7 H 1.08996 * 110.42031 * 302.31688 * 6 4 3 8 8 C 1.54909 * 110.37053 * 64.62803 * 6 4 3 9 9 C 1.55140 * 101.65311 * 155.90092 * 8 6 4 10 10 C 1.54319 * 103.01846 * 324.34470 * 9 8 6 11 11 N 1.47443 * 107.23216 * 22.28221 * 10 9 8 12 12 C 1.46902 * 110.99742 * 123.25719 * 11 10 9 13 13 C 1.52997 * 109.47411 * 69.87295 * 12 11 10 14 14 C 1.50694 * 109.47460 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00179 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00472 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99350 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00608 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47326 * 270.00340 * 18 16 14 20 20 H 1.48506 * 109.46545 * 30.00090 * 18 16 14 21 21 H 1.48498 * 109.47210 * 149.99801 * 18 16 14 22 22 H 1.09007 * 109.46997 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47402 * 299.99900 * 1 2 3 24 24 H 1.08995 * 109.46802 * 60.00703 * 1 2 3 25 25 H 1.09000 * 109.47589 * 239.99346 * 2 1 3 26 26 H 1.09007 * 109.46804 * 119.99711 * 2 1 3 27 27 H 1.09004 * 110.99440 * 37.80999 * 8 6 4 28 28 H 1.09001 * 111.02389 * 274.00402 * 8 6 4 29 29 H 1.09003 * 110.70802 * 205.96791 * 9 8 6 30 30 H 1.08993 * 110.70653 * 82.73049 * 9 8 6 31 31 H 1.08998 * 109.88832 * 262.87806 * 10 9 8 32 32 H 1.09003 * 109.88908 * 141.68843 * 10 9 8 33 33 H 1.09003 * 109.47595 * 309.87238 * 12 11 10 34 34 H 1.08999 * 109.47491 * 189.87487 * 12 11 10 35 35 H 1.09005 * 109.46800 * 60.00408 * 13 12 11 36 36 H 1.08998 * 109.47382 * 300.00207 * 13 12 11 37 37 H 0.97005 * 119.99661 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9207 2.9375 0.0000 7 1 3.5618 3.4971 -0.8638 8 6 3.5511 3.6744 1.3115 9 6 4.6826 4.7315 1.4065 10 6 5.9077 3.9811 0.8430 11 7 5.3981 2.8834 0.0008 12 6 5.9290 2.9782 -1.3656 13 6 7.4241 2.6534 -1.3556 14 6 7.9686 2.7501 -2.7574 15 1 7.3138 3.0162 -3.5740 16 6 9.3027 2.4979 -2.9978 17 7 10.1000 2.1734 -2.0035 18 14 9.9776 2.6170 -4.7355 19 1 9.8632 1.2953 -5.4026 20 1 9.2011 3.6261 -5.4998 21 1 11.4046 3.0245 -4.6854 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 3.5797 2.9943 2.1629 28 1 2.5753 4.1532 1.2294 29 1 4.8523 5.0225 2.4432 30 1 4.4488 5.6023 0.7940 31 1 6.5025 3.5752 1.6613 32 1 6.5136 4.6591 0.2419 33 1 5.7795 3.9894 -1.7443 34 1 5.4075 2.2689 -2.0082 35 1 7.5736 1.6422 -0.9771 36 1 7.9457 3.3627 -0.7131 37 1 11.0385 1.9956 -2.1726 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000001621752.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:48 Heat of formation + Delta-G solvation = -113.175811 kcal Electronic energy + Delta-G solvation = -17625.273584 eV Core-core repulsion = 14787.425992 eV Total energy + Delta-G solvation = -2837.847592 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.68315 -39.74484 -37.49076 -35.66992 -33.65985 -32.68064 -30.74877 -30.15979 -26.40849 -25.08166 -23.45793 -22.99439 -21.65552 -20.93519 -18.84716 -18.62441 -17.61164 -17.44200 -16.81170 -16.53594 -15.88054 -15.10692 -14.95931 -14.77448 -14.34570 -14.24074 -13.77230 -13.50917 -13.25887 -13.14149 -12.96615 -12.76449 -12.71554 -12.46752 -12.36169 -12.09234 -11.92122 -11.61558 -11.51975 -11.45631 -11.27452 -11.26493 -10.57992 -9.29190 -8.21563 -6.34025 1.21421 1.38300 1.41077 1.51681 1.55224 2.39070 3.06548 3.11598 3.55325 3.56973 3.96333 3.99031 4.01784 4.11612 4.21053 4.35491 4.38142 4.45613 4.54905 4.78828 4.86138 4.92980 4.94135 4.97458 5.00406 5.08108 5.15237 5.29785 5.40830 5.45711 5.60695 5.73947 6.02803 6.04637 6.27009 6.82646 6.84487 7.35190 8.91023 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.026189 B = 0.005472 C = 0.004793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.876527 B = 5115.623871 C = 5840.049396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.050 3.950 3 O -0.356 6.356 4 C 0.466 3.534 5 O -0.527 6.527 6 C 0.074 3.926 7 H 0.105 0.895 8 C -0.101 4.101 9 C -0.126 4.126 10 C 0.042 3.958 11 N -0.541 5.541 12 C 0.082 3.918 13 C 0.040 3.960 14 C -0.547 4.547 15 H 0.061 0.939 16 C 0.001 3.999 17 N -0.932 5.932 18 Si 0.970 3.030 19 H -0.275 1.275 20 H -0.259 1.259 21 H -0.279 1.279 22 H 0.098 0.902 23 H 0.074 0.926 24 H 0.069 0.931 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.119 0.881 29 H 0.102 0.898 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.039 0.961 34 H 0.045 0.955 35 H -0.020 1.020 36 H -0.001 1.001 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.906 3.553 6.245 21.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.023 4.023 3 O -0.273 6.273 4 C 0.309 3.691 5 O -0.415 6.415 6 C -0.036 4.036 7 H 0.123 0.877 8 C -0.139 4.139 9 C -0.164 4.164 10 C -0.085 4.085 11 N -0.266 5.266 12 C -0.046 4.046 13 C 0.003 3.997 14 C -0.585 4.585 15 H 0.079 0.921 16 C -0.197 4.197 17 N -0.572 5.572 18 Si 0.794 3.206 19 H -0.200 1.200 20 H -0.183 1.183 21 H -0.204 1.204 22 H 0.117 0.883 23 H 0.093 0.907 24 H 0.089 0.911 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.138 0.862 29 H 0.120 0.880 30 H 0.107 0.893 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.064 0.936 35 H -0.001 1.001 36 H 0.017 0.983 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.373 2.714 6.486 20.610 hybrid contribution 0.892 -0.011 -1.178 1.477 sum -18.482 2.703 5.309 19.418 Atomic orbital electron populations 1.21798 0.89604 1.04380 1.03976 1.23281 0.97502 0.79501 1.02044 1.86477 1.23348 1.33423 1.84032 1.24004 0.80612 0.92814 0.71706 1.90680 1.61383 1.44085 1.45316 1.22254 0.89078 0.89010 1.03264 0.87717 1.22676 1.00892 0.97015 0.93292 1.22803 0.92424 0.97680 1.03461 1.22852 0.98286 0.90882 0.96514 1.62887 1.04470 1.46803 1.12429 1.22099 0.96752 0.98326 0.87398 1.18855 0.90691 0.94591 0.95569 1.21609 0.94901 1.47435 0.94562 0.92073 1.26013 0.97388 0.94464 1.01867 1.70131 1.05597 1.47933 1.33569 0.85381 0.77586 0.78784 0.78879 1.20026 1.18333 1.20408 0.88317 0.90669 0.91146 0.92377 0.91713 0.90708 0.86227 0.87979 0.89288 0.91679 0.93004 0.94261 0.93622 1.00120 0.98310 0.92707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 10.29 71.98 0.74 -1.18 16 2 C 0.05 1.13 6.19 71.98 0.45 1.58 16 3 O -0.36 -9.58 10.22 -51.40 -0.53 -10.10 16 4 C 0.47 15.77 7.30 71.24 0.52 16.29 16 5 O -0.53 -22.90 16.23 21.97 0.36 -22.55 16 6 C 0.07 2.22 2.91 44.64 0.13 2.35 16 7 H 0.11 2.81 7.81 -2.39 -0.02 2.79 16 8 C -0.10 -2.13 6.48 31.98 0.21 -1.92 16 9 C -0.13 -2.65 6.94 31.78 0.22 -2.43 16 10 C 0.04 1.37 6.21 86.65 0.54 1.91 16 11 N -0.54 -21.21 4.34 -864.98 -3.75 -24.96 16 12 C 0.08 3.72 4.47 86.30 0.39 4.11 16 13 C 0.04 2.31 5.00 29.85 0.15 2.46 16 14 C -0.55 -32.66 9.11 25.60 0.23 -32.43 16 15 H 0.06 3.47 7.74 -2.91 -0.02 3.44 16 16 C 0.00 0.04 5.46 84.66 0.46 0.50 16 17 N -0.93 -59.16 13.29 21.45 0.28 -58.87 16 18 Si 0.97 45.56 29.54 68.60 2.03 47.59 16 19 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 20 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 21 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 22 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 23 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.06 1.42 8.13 -2.39 -0.02 1.40 16 26 H 0.06 1.49 8.13 -2.38 -0.02 1.47 16 27 H 0.07 1.65 8.05 -2.39 -0.02 1.63 16 28 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.05 1.85 6.91 -2.39 -0.02 1.83 16 33 H 0.04 1.65 7.96 -2.39 -0.02 1.63 16 34 H 0.05 2.15 8.07 -2.39 -0.02 2.13 16 35 H -0.02 -1.29 8.14 -2.38 -0.02 -1.31 16 36 H 0.00 -0.09 7.14 -2.39 -0.02 -0.10 16 37 H 0.26 15.64 8.31 -92.70 -0.77 14.87 16 Total: -1.00 -75.99 308.71 3.45 -72.54 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: 1.02 Total: 5.11 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: 4.03 Total: -8.76 kcal Atomic # 7 Polarization: -80.37 SS G_CDS: -3.47 Total: -83.83 kcal Atomic # 8 Polarization: -32.48 SS G_CDS: -0.17 Total: -32.65 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -75.99 3.45 -72.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001621752.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.634 kcal (2) G-P(sol) polarization free energy of solvation -75.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds