Wall clock time and date at job start Thu Apr 9 2020 12:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46900 * 109.46875 * 2 1 4 4 C 1.46902 * 111.00014 * 297.55058 * 3 2 1 5 5 C 1.50698 * 109.47113 * 292.80035 * 4 3 2 6 6 H 1.07999 * 119.99981 * 354.98542 * 5 4 3 7 7 C 1.37877 * 119.99956 * 174.98827 * 5 4 3 8 8 N 1.31518 * 120.00190 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00165 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47175 * 59.99393 * 9 7 5 11 11 H 1.48501 * 109.47271 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46928 * 299.99779 * 9 7 5 13 13 C 1.46902 * 111.00250 * 61.50456 * 3 2 1 14 14 C 1.52998 * 109.46942 * 66.04522 * 13 3 2 15 15 N 1.46498 * 109.47189 * 180.02562 * 14 13 3 16 16 C 1.47053 * 125.41562 * 89.99392 * 15 14 13 17 17 C 1.54097 * 103.99424 * 179.97438 * 16 15 14 18 18 N 1.47387 * 103.70188 * 0.11006 * 17 16 15 19 19 C 1.33948 * 125.40648 * 269.99915 * 15 14 13 20 20 O 1.21587 * 123.04699 * 359.97438 * 19 15 14 21 21 H 1.08998 * 109.47178 * 179.51311 * 1 2 3 22 22 H 1.09002 * 109.46864 * 299.51106 * 1 2 3 23 23 H 1.09000 * 109.47424 * 59.50947 * 1 2 3 24 24 H 1.08997 * 109.46443 * 240.00405 * 2 1 3 25 25 H 1.08990 * 109.47380 * 119.99844 * 2 1 3 26 26 H 1.09002 * 109.46969 * 52.80299 * 4 3 2 27 27 H 1.09008 * 109.47060 * 172.80008 * 4 3 2 28 28 H 0.96997 * 120.00075 * 179.97438 * 8 7 5 29 29 H 1.08998 * 109.46832 * 306.04500 * 13 3 2 30 30 H 1.08998 * 109.47365 * 186.04807 * 13 3 2 31 31 H 1.08998 * 109.47375 * 60.00311 * 14 13 3 32 32 H 1.08998 * 109.47326 * 299.99753 * 14 13 3 33 33 H 1.08995 * 110.55060 * 298.60669 * 16 15 14 34 34 H 1.09010 * 110.54190 * 61.26580 * 16 15 14 35 35 H 1.08997 * 110.54773 * 118.67199 * 17 16 15 36 36 H 1.09003 * 110.55043 * 241.48426 * 17 16 15 37 37 H 0.97005 * 125.37734 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5971 2.0928 -1.2159 5 6 2.2901 1.4936 -2.4125 6 1 3.0359 0.7245 -2.2755 7 6 1.9720 1.9271 -3.6821 8 7 1.0635 2.8633 -3.8489 9 14 2.8304 1.1839 -5.1653 10 1 2.5677 -0.2770 -5.2087 11 1 2.3130 1.8165 -6.4052 12 1 4.2927 1.4209 -5.0611 13 6 1.5783 2.0995 1.2053 14 6 2.2407 1.4792 2.4371 15 7 1.8001 2.1913 3.6391 16 6 0.6234 1.8462 4.4508 17 6 0.6245 2.8997 5.5755 18 7 1.8043 3.7303 5.2746 19 6 2.4050 3.2603 4.1734 20 8 3.4080 3.7596 3.7011 21 1 -0.3633 -1.0276 -0.0087 22 1 -0.3633 0.5062 0.8944 23 1 -0.3634 0.5214 -0.8855 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 0.5178 1.9972 -1.3354 27 1 1.8615 3.1471 -1.1331 28 1 0.8400 3.1686 -4.7421 29 1 0.4950 2.0218 1.2974 30 1 1.8621 3.1492 1.1299 31 1 3.3240 1.5570 2.3450 32 1 1.9568 0.4296 2.5126 33 1 -0.2871 1.9228 3.8566 34 1 0.7254 0.8431 4.8652 35 1 -0.2854 3.4987 5.5395 36 1 0.7300 2.4203 6.5487 37 1 2.0999 4.4949 5.7933 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042454479.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:57 Heat of formation + Delta-G solvation = -33.445507 kcal Electronic energy + Delta-G solvation = -17760.031967 eV Core-core repulsion = 14957.934492 eV Total energy + Delta-G solvation = -2802.097475 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.90817 -39.13063 -37.39552 -35.41670 -34.54876 -31.33117 -30.69382 -29.53586 -27.63123 -25.22347 -24.37391 -23.73637 -21.42767 -20.59123 -18.65018 -18.37567 -17.49619 -17.15923 -16.94505 -16.36145 -16.19462 -15.20999 -14.99605 -14.82555 -14.68983 -14.53159 -13.95032 -13.68788 -13.43301 -13.10757 -12.99382 -12.89933 -12.64389 -12.54741 -12.33336 -12.20069 -11.86222 -11.44079 -11.30509 -11.26985 -10.59127 -10.34880 -9.48466 -8.91967 -8.18703 -6.28762 1.40886 1.44849 1.52279 1.61058 2.09688 2.41485 3.04219 3.13694 3.46434 3.63981 3.84455 4.08846 4.27223 4.31454 4.38507 4.43537 4.54131 4.68247 4.73605 4.78175 4.85926 4.99820 5.03519 5.03994 5.17494 5.21498 5.39998 5.52543 5.67683 5.72413 6.08015 6.20853 6.37277 6.56962 6.65441 6.87927 7.40701 7.57560 8.92023 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.039333 B = 0.005034 C = 0.004786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.701594 B = 5560.302559 C = 5849.120804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.057 3.943 3 N -0.545 5.545 4 C 0.206 3.794 5 C -0.520 4.520 6 H 0.063 0.937 7 C 0.001 3.999 8 N -0.937 5.937 9 Si 0.969 3.031 10 H -0.263 1.263 11 H -0.284 1.284 12 H -0.272 1.272 13 C 0.047 3.953 14 C 0.168 3.832 15 N -0.633 5.633 16 C 0.082 3.918 17 C 0.096 3.904 18 N -0.737 5.737 19 C 0.681 3.319 20 O -0.646 6.646 21 H 0.077 0.923 22 H 0.062 0.938 23 H 0.027 0.973 24 H 0.060 0.940 25 H 0.093 0.907 26 H -0.015 1.015 27 H -0.017 1.017 28 H 0.264 0.736 29 H 0.040 0.960 30 H 0.030 0.970 31 H 0.064 0.936 32 H 0.112 0.888 33 H 0.089 0.911 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.114 0.886 37 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.595 -5.834 20.248 21.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.071 4.071 3 N -0.269 5.269 4 C 0.080 3.920 5 C -0.559 4.559 6 H 0.081 0.919 7 C -0.197 4.197 8 N -0.577 5.577 9 Si 0.794 3.206 10 H -0.188 1.188 11 H -0.209 1.209 12 H -0.197 1.197 13 C -0.082 4.082 14 C 0.045 3.955 15 N -0.371 5.371 16 C -0.040 4.040 17 C -0.028 4.028 18 N -0.399 5.399 19 C 0.381 3.619 20 O -0.528 6.528 21 H 0.096 0.904 22 H 0.081 0.919 23 H 0.046 0.954 24 H 0.079 0.921 25 H 0.111 0.889 26 H 0.002 0.998 27 H 0.001 0.999 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.048 0.952 31 H 0.083 0.917 32 H 0.130 0.870 33 H 0.107 0.893 34 H 0.128 0.872 35 H 0.121 0.879 36 H 0.132 0.868 37 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -4.662 -5.616 19.770 21.074 hybrid contribution -0.434 0.729 -1.031 1.335 sum -5.096 -4.887 18.739 20.025 Atomic orbital electron populations 1.22264 0.98143 1.02467 1.00803 1.22118 0.93214 0.89489 1.02288 1.62139 1.59929 1.03271 1.01587 1.19386 0.93357 0.91930 0.87317 1.21424 1.21843 1.21481 0.91127 0.91885 1.25915 0.95916 0.95553 1.02278 1.70090 1.33635 1.30670 1.23338 0.85441 0.78683 0.78919 0.77606 1.18779 1.20904 1.19688 1.22329 0.97706 0.97040 0.91162 1.21031 0.98954 0.95519 0.79976 1.47228 1.30291 1.31265 1.28311 1.22783 0.88434 1.00966 0.91836 1.22711 0.88848 0.91824 0.99391 1.45185 1.30941 1.35109 1.28625 1.16386 0.82682 0.81157 0.81693 1.90932 1.29078 1.64966 1.67849 0.90373 0.91947 0.95413 0.92118 0.88900 0.99783 0.99924 0.92779 0.94189 0.95160 0.91735 0.87031 0.89257 0.87247 0.87934 0.86804 0.72326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.85 9.26 71.98 0.67 -5.18 16 2 C 0.06 2.04 5.67 86.31 0.49 2.53 16 3 N -0.55 -24.14 4.69 -900.78 -4.23 -28.37 16 4 C 0.21 11.43 4.54 85.56 0.39 11.82 16 5 C -0.52 -30.34 8.39 25.60 0.21 -30.12 16 6 H 0.06 3.59 7.39 -2.91 -0.02 3.57 16 7 C 0.00 0.06 5.46 84.65 0.46 0.52 16 8 N -0.94 -57.89 13.29 21.45 0.28 -57.60 16 9 Si 0.97 45.31 29.54 68.60 2.03 47.34 16 10 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 12 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 13 C 0.05 1.80 5.06 86.30 0.44 2.24 16 14 C 0.17 5.05 5.92 86.38 0.51 5.56 16 15 N -0.63 -16.46 2.96 -838.39 -2.48 -18.94 16 16 C 0.08 1.11 7.67 86.65 0.66 1.78 16 17 C 0.10 0.93 8.08 86.58 0.70 1.63 16 18 N -0.74 -14.31 6.39 -476.60 -3.04 -17.35 16 19 C 0.68 21.17 8.60 179.57 1.55 22.71 16 20 O -0.65 -27.85 17.53 -3.99 -0.07 -27.92 16 21 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 22 H 0.06 1.79 6.33 -2.39 -0.02 1.77 16 23 H 0.03 1.13 6.28 -2.39 -0.02 1.11 16 24 H 0.06 2.46 6.98 -2.39 -0.02 2.45 16 25 H 0.09 2.61 6.40 -2.39 -0.02 2.59 16 26 H -0.02 -0.90 6.02 -2.39 -0.01 -0.91 16 27 H -0.02 -1.08 7.91 -2.38 -0.02 -1.10 16 28 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 29 H 0.04 1.41 6.06 -2.39 -0.01 1.40 16 30 H 0.03 1.37 7.92 -2.39 -0.02 1.35 16 31 H 0.06 2.30 7.92 -2.39 -0.02 2.28 16 32 H 0.11 2.57 6.52 -2.39 -0.02 2.55 16 33 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.11 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.10 0.62 8.14 -2.39 -0.02 0.61 16 36 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.43 6.93 8.96 -92.70 -0.83 6.10 16 Total: -1.00 -80.28 298.09 -1.19 -81.47 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: 0.24 Total: 7.88 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: 6.08 Total: 13.50 kcal Atomic # 7 Polarization: -112.80 SS G_CDS: -9.46 Total: -122.26 kcal Atomic # 8 Polarization: -27.85 SS G_CDS: -0.07 Total: -27.92 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -80.28 -1.19 -81.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454479.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.021 kcal (2) G-P(sol) polarization free energy of solvation -80.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds