Wall clock time and date at job start Thu Apr 9 2020 12:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46901 * 111.00459 * 2 1 4 4 C 1.46899 * 111.00216 * 123.95127 * 2 1 3 5 5 C 1.50707 * 109.46740 * 66.04587 * 4 2 1 6 6 O 1.21275 * 120.00197 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99596 * 180.02562 * 5 4 2 8 8 C 1.46969 * 120.59184 * 179.97438 * 7 5 4 9 9 C 1.53365 * 108.63823 * 235.24762 * 8 7 5 10 10 N 1.46971 * 108.63406 * 310.57818 * 9 8 7 11 11 C 1.36933 * 120.58954 * 235.20080 * 10 9 8 12 12 H 1.08004 * 119.99676 * 151.84704 * 11 10 9 13 13 C 1.38804 * 120.00274 * 331.57456 * 11 10 9 14 14 N 1.31613 * 120.00257 * 342.82344 * 13 11 10 15 15 Si 1.86809 * 120.00042 * 162.81945 * 13 11 10 16 16 H 1.48504 * 109.46931 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.46750 * 119.99895 * 15 13 11 18 18 H 1.48498 * 109.47076 * 239.99975 * 15 13 11 19 19 C 1.46964 * 118.81046 * 55.47559 * 10 9 8 20 20 C 1.46965 * 120.59893 * 0.02562 * 7 5 4 21 21 H 1.09001 * 109.47409 * 296.04779 * 1 2 3 22 22 H 1.09000 * 109.46973 * 56.04667 * 1 2 3 23 23 H 1.08999 * 109.47419 * 176.04352 * 1 2 3 24 24 H 1.08997 * 109.47528 * 183.95231 * 3 2 1 25 25 H 1.08998 * 109.47007 * 303.95444 * 3 2 1 26 26 H 1.09006 * 109.47087 * 63.95078 * 3 2 1 27 27 H 1.09008 * 109.47320 * 306.04996 * 4 2 1 28 28 H 1.08996 * 109.47838 * 186.04970 * 4 2 1 29 29 H 1.09001 * 109.60759 * 115.50025 * 8 7 5 30 30 H 1.08998 * 109.74755 * 355.07824 * 8 7 5 31 31 H 1.08993 * 109.61301 * 190.83327 * 9 8 7 32 32 H 1.09004 * 109.75220 * 70.40370 * 9 8 7 33 33 H 0.97004 * 120.00510 * 180.02562 * 14 13 11 34 34 H 1.08995 * 109.60931 * 64.27031 * 19 10 9 35 35 H 1.09004 * 109.60392 * 184.78099 * 19 10 9 36 36 H 1.09002 * 109.60509 * 244.49992 * 20 7 5 37 37 H 1.09000 * 109.60856 * 4.83277 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.6368 -2.2204 0.9728 6 8 1.0054 -2.5832 0.0031 7 7 2.0180 -3.1179 1.9033 8 6 1.6749 -4.5394 1.7561 9 6 0.9283 -4.9964 3.0153 10 7 1.6939 -4.5711 4.1956 11 6 2.0803 -5.4829 5.1413 12 1 2.9707 -5.3088 5.7271 13 6 1.3244 -6.6281 5.3509 14 7 0.0865 -6.6897 4.9083 15 14 2.0643 -8.0819 6.2613 16 1 3.4606 -7.7621 6.6528 17 1 1.2617 -8.3641 7.4784 18 1 2.0584 -9.2747 5.3768 19 6 2.0320 -3.1487 4.3456 20 6 2.7830 -2.6926 3.0838 21 1 -0.3634 0.4513 0.9233 22 1 -0.3633 0.5740 -0.8524 23 1 -0.3634 -1.0252 -0.0709 24 1 3.0828 1.3432 -0.0708 25 1 1.5899 1.9163 -0.8524 26 1 1.7044 1.8724 0.9233 27 1 1.5610 -0.3872 2.0629 28 1 3.0796 -0.6610 1.1757 29 1 2.5865 -5.1254 1.6383 30 1 1.0371 -4.6758 0.8828 31 1 0.8352 -6.0823 3.0116 32 1 -0.0633 -4.5443 3.0401 33 1 -0.4419 -7.4899 5.0551 34 1 1.1184 -2.5658 4.4613 35 1 2.6681 -3.0143 5.2206 36 1 3.7737 -3.1468 3.0608 37 1 2.8785 -1.6068 3.0861 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045944541.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:15:03 Heat of formation + Delta-G solvation = 9.423585 kcal Electronic energy + Delta-G solvation = -18136.463008 eV Core-core repulsion = 15336.224476 eV Total energy + Delta-G solvation = -2800.238532 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.74783 -37.29059 -36.14048 -33.89240 -31.20056 -30.64105 -28.43417 -27.52855 -26.62414 -23.71812 -23.05507 -22.06286 -20.35522 -18.54718 -17.22984 -16.22598 -15.76583 -15.61092 -14.87499 -14.60465 -14.46097 -14.08811 -13.66852 -13.45820 -13.25625 -12.71479 -12.63474 -12.37604 -11.97183 -11.81210 -11.57147 -11.39739 -11.23561 -10.84498 -10.71564 -10.55563 -10.25060 -9.97746 -9.83327 -9.29624 -8.60694 -8.34302 -8.19101 -6.72774 -5.86347 -3.32013 3.02779 3.32434 3.33207 3.41382 3.43188 4.05877 4.42782 4.80971 5.05417 5.18822 5.27401 5.28862 5.32168 5.35567 5.59767 5.61822 5.71289 5.72454 5.75454 5.86964 6.13734 6.17278 6.33729 6.38797 6.49001 6.67281 6.82239 6.92841 7.00104 7.26389 7.54416 7.71321 7.94831 8.34655 8.64429 9.10448 9.73191 10.29961 11.21008 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.054092 B = 0.005427 C = 0.005220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.514622 B = 5158.318276 C = 5362.729511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.531 5.531 3 C 0.025 3.975 4 C 0.038 3.962 5 C 0.510 3.490 6 O -0.539 6.539 7 N -0.599 5.599 8 C 0.089 3.911 9 C 0.158 3.842 10 N -0.591 5.591 11 C -0.258 4.258 12 H 0.068 0.932 13 C 0.004 3.996 14 N -0.901 5.901 15 Si 0.904 3.096 16 H -0.277 1.277 17 H -0.290 1.290 18 H -0.288 1.288 19 C 0.131 3.869 20 C 0.089 3.911 21 H 0.019 0.981 22 H 0.065 0.935 23 H 0.091 0.909 24 H 0.067 0.933 25 H 0.070 0.930 26 H 0.024 0.976 27 H 0.062 0.938 28 H 0.099 0.901 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.022 0.978 33 H 0.255 0.745 34 H 0.022 0.978 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.383 12.352 -5.502 14.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.255 5.255 3 C -0.123 4.123 4 C -0.093 4.093 5 C 0.297 3.703 6 O -0.417 6.417 7 N -0.333 5.333 8 C -0.035 4.035 9 C 0.032 3.968 10 N -0.314 5.314 11 C -0.387 4.387 12 H 0.086 0.914 13 C -0.195 4.195 14 N -0.544 5.544 15 Si 0.733 3.267 16 H -0.202 1.202 17 H -0.217 1.217 18 H -0.214 1.214 19 C 0.003 3.997 20 C -0.036 4.036 21 H 0.038 0.962 22 H 0.083 0.917 23 H 0.109 0.891 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.043 0.957 27 H 0.080 0.920 28 H 0.118 0.882 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.117 0.883 32 H 0.041 0.959 33 H 0.065 0.935 34 H 0.040 0.960 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.089 11.776 -6.407 14.015 hybrid contribution 0.071 -0.319 1.374 1.413 sum 4.160 11.457 -5.032 13.187 Atomic orbital electron populations 1.22567 0.86443 1.04356 0.99569 1.61642 1.09026 1.12960 1.41872 1.22412 1.00705 0.88641 1.00537 1.22025 1.01642 0.92494 0.93182 1.20360 0.79866 0.87501 0.82591 1.90609 1.40354 1.80318 1.30379 1.48081 1.54549 1.08791 1.21846 1.22466 1.00369 0.79189 1.01433 1.21190 0.91560 1.01493 0.82561 1.44018 1.64530 1.01105 1.21743 1.19231 1.04842 0.99996 1.14675 0.91417 1.25088 0.94681 1.00323 0.99378 1.70029 1.06787 1.28015 1.49615 0.86209 0.78656 0.82733 0.79062 1.20179 1.21677 1.21429 1.21350 0.96738 0.87461 0.94120 1.22442 0.95622 0.98426 0.87096 0.96212 0.91654 0.89085 0.91382 0.91158 0.95701 0.92028 0.88247 0.92255 0.90147 0.88281 0.95937 0.93476 0.95993 0.91477 0.91498 0.91215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.21 60.06 0.55 0.80 16 2 N -0.53 -7.21 4.76 -252.72 -1.20 -8.41 16 3 C 0.03 0.25 9.57 60.07 0.57 0.82 16 4 C 0.04 0.51 3.79 -4.97 -0.02 0.49 16 5 C 0.51 9.05 7.42 -10.98 -0.08 8.96 16 6 O -0.54 -11.23 13.72 5.56 0.08 -11.15 16 7 N -0.60 -10.92 2.95 -172.24 -0.51 -11.43 16 8 C 0.09 1.81 6.59 -3.60 -0.02 1.78 16 9 C 0.16 3.78 5.51 -3.60 -0.02 3.76 16 10 N -0.59 -14.33 2.96 -171.80 -0.51 -14.84 16 11 C -0.26 -6.83 9.57 -15.06 -0.14 -6.97 16 12 H 0.07 1.74 7.89 -52.48 -0.41 1.33 16 13 C 0.00 0.12 4.91 -17.44 -0.09 0.03 16 14 N -0.90 -25.69 11.20 55.49 0.62 -25.07 16 15 Si 0.90 21.12 29.59 -169.99 -5.03 16.09 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 C 0.13 2.55 6.70 -3.39 -0.02 2.53 16 20 C 0.09 1.43 6.52 -3.39 -0.02 1.40 16 21 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 22 H 0.06 0.76 8.12 -51.93 -0.42 0.34 16 23 H 0.09 1.49 5.88 -51.93 -0.31 1.18 16 24 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 25 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 26 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.06 0.77 7.70 -51.92 -0.40 0.37 16 28 H 0.10 1.14 7.83 -51.93 -0.41 0.74 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.08 1.65 7.00 -51.93 -0.36 1.29 16 31 H 0.10 2.61 6.00 -51.93 -0.31 2.30 16 32 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 1.23 7.93 -51.93 -0.41 0.82 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.07 0.87 5.91 -51.93 -0.31 0.56 16 LS Contribution 293.95 15.07 4.43 4.43 Total: -1.00 -31.06 293.95 -7.27 -38.32 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -5.86 Total: -1.55 kcal Atomic # 6 Polarization: 12.90 SS G_CDS: 0.71 Total: 13.61 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: -1.60 Total: -59.76 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.08 Total: -11.15 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.06 -7.27 -38.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045944541.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.747 kcal (2) G-P(sol) polarization free energy of solvation -31.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds