Wall clock time and date at job start Thu Apr 9 2020 12:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45204 * 109.47064 * 2 1 4 4 C 1.34224 * 117.00145 * 180.02562 * 3 2 1 5 5 O 1.20824 * 120.00342 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.00007 * 179.97438 * 4 3 2 7 7 H 1.09002 * 109.47117 * 60.00045 * 6 4 3 8 8 C 1.52997 * 109.47433 * 300.00213 * 6 4 3 9 9 C 1.52993 * 109.47602 * 180.02562 * 8 6 4 10 10 C 1.53004 * 109.47226 * 59.99295 * 9 8 6 11 11 C 1.52997 * 109.47406 * 300.00825 * 10 9 8 12 12 H 1.08999 * 109.46983 * 179.97438 * 11 10 9 13 13 N 1.46506 * 109.46691 * 299.99403 * 11 10 9 14 14 C 1.36939 * 120.00073 * 274.72524 * 13 11 10 15 15 H 1.08004 * 119.99859 * 0.02562 * 14 13 11 16 16 C 1.38805 * 119.99849 * 180.02562 * 14 13 11 17 17 N 1.31622 * 120.00455 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00168 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47227 * 89.99498 * 18 16 14 20 20 H 1.48496 * 109.47434 * 209.99930 * 18 16 14 21 21 H 1.48507 * 109.46769 * 330.00032 * 18 16 14 22 22 C 1.52993 * 109.47602 * 59.99406 * 11 10 9 23 23 H 1.08998 * 109.47666 * 60.00024 * 1 2 3 24 24 H 1.09005 * 109.47100 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47047 * 299.99882 * 1 2 3 26 26 H 1.08998 * 109.47325 * 239.99645 * 2 1 3 27 27 H 1.09001 * 109.47427 * 119.99517 * 2 1 3 28 28 H 1.08999 * 109.46983 * 59.99767 * 8 6 4 29 29 H 1.09002 * 109.46832 * 300.00007 * 8 6 4 30 30 H 1.09002 * 109.47012 * 299.99871 * 9 8 6 31 31 H 1.08996 * 109.47599 * 179.97438 * 9 8 6 32 32 H 1.08995 * 109.47411 * 179.97438 * 10 9 8 33 33 H 1.09002 * 109.46655 * 60.00357 * 10 9 8 34 34 H 0.97005 * 119.99811 * 95.00317 * 13 11 10 35 35 H 0.97000 * 120.00679 * 179.97438 * 17 16 14 36 36 H 1.09002 * 109.47012 * 60.00129 * 22 11 10 37 37 H 1.08996 * 109.47599 * 180.02562 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5868 -0.0005 6 6 3.9206 2.9375 -0.0012 7 1 3.5849 3.4699 0.8888 8 6 3.4486 3.6841 -1.2504 9 6 4.0338 5.0977 -1.2514 10 6 5.5617 5.0172 -1.2521 11 6 6.0337 4.2706 -0.0029 12 1 7.1222 4.2128 -0.0037 13 7 5.5831 4.9865 1.1933 14 6 6.3295 6.0191 1.6951 15 1 7.2502 6.3060 1.2088 16 6 5.9028 6.6970 2.8286 17 7 4.7805 6.3477 3.4210 18 14 6.9206 8.1061 3.5128 19 1 6.4837 9.3809 2.8889 20 1 6.7319 8.1846 4.9836 21 1 8.3556 7.8730 3.2096 22 6 5.4485 2.8570 -0.0019 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.3601 3.7411 -1.2500 29 1 3.7842 3.1517 -2.1403 30 1 3.6985 5.6304 -0.3614 31 1 3.6979 5.6295 -2.1415 32 1 5.9786 6.0242 -1.2533 33 1 5.8969 4.4846 -2.1421 34 1 4.7580 4.7264 1.6321 35 1 4.4825 6.8212 4.2134 36 1 5.7838 2.3243 -0.8919 37 1 5.7844 2.3252 0.8883 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255337684.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:08 Heat of formation + Delta-G solvation = -99.343567 kcal Electronic energy + Delta-G solvation = -17964.963856 eV Core-core repulsion = 15127.716075 eV Total energy + Delta-G solvation = -2837.247781 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.48944 -38.14557 -36.35943 -33.65847 -31.89184 -31.01277 -30.48990 -28.16481 -24.41975 -23.61709 -22.56419 -21.81304 -20.46487 -18.49148 -17.67333 -17.01085 -16.42500 -16.08898 -14.77764 -14.62088 -14.10570 -13.69178 -13.59439 -13.47725 -13.08165 -12.80875 -12.33448 -12.02188 -11.85998 -11.73660 -11.61298 -11.39875 -10.98073 -10.83316 -10.70098 -10.49369 -10.35558 -10.20323 -10.02121 -9.80668 -9.55941 -9.51790 -8.84325 -6.93173 -5.74905 -3.02891 2.44685 2.83530 3.44975 3.50571 3.51883 4.61522 4.78091 4.84810 4.93943 5.08815 5.13133 5.18657 5.44630 5.58639 5.66970 5.69814 5.73100 5.74574 5.85231 5.88132 5.95194 6.02468 6.13995 6.22970 6.43374 6.45887 6.55841 6.66877 6.80435 6.87502 7.01761 7.11349 7.73061 7.97875 8.44141 9.55268 10.12622 10.47352 11.48028 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.030881 B = 0.005798 C = 0.005416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.486688 B = 4828.286732 C = 5168.568062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.357 6.357 4 C 0.468 3.532 5 O -0.514 6.514 6 C -0.077 4.077 7 H 0.117 0.883 8 C -0.103 4.103 9 C -0.111 4.111 10 C -0.136 4.136 11 C 0.175 3.825 12 H 0.053 0.947 13 N -0.722 5.722 14 C -0.236 4.236 15 H 0.070 0.930 16 C -0.014 4.014 17 N -0.935 5.935 18 Si 0.905 3.095 19 H -0.291 1.291 20 H -0.292 1.292 21 H -0.283 1.283 22 C -0.104 4.104 23 H 0.065 0.935 24 H 0.076 0.924 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.044 0.956 34 H 0.382 0.618 35 H 0.255 0.745 36 H 0.065 0.935 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.663 -9.353 -9.408 14.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.015 4.015 3 O -0.274 6.274 4 C 0.312 3.688 5 O -0.402 6.402 6 C -0.096 4.096 7 H 0.135 0.865 8 C -0.140 4.140 9 C -0.148 4.148 10 C -0.176 4.176 11 C 0.065 3.935 12 H 0.071 0.929 13 N -0.364 5.364 14 C -0.367 4.367 15 H 0.088 0.912 16 C -0.209 4.209 17 N -0.583 5.583 18 Si 0.736 3.264 19 H -0.218 1.218 20 H -0.219 1.219 21 H -0.208 1.208 22 C -0.143 4.143 23 H 0.085 0.915 24 H 0.095 0.905 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.217 0.783 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.335 -9.550 -9.350 14.790 hybrid contribution 0.224 0.515 0.637 0.849 sum -6.111 -9.035 -8.713 13.960 Atomic orbital electron populations 1.21794 0.92833 1.02659 1.03605 1.22966 0.95265 0.80926 1.02313 1.86552 1.25123 1.31678 1.84073 1.24182 0.80091 0.93180 0.71343 1.90617 1.60430 1.43404 1.45722 1.21155 0.97305 0.88483 1.02628 0.86548 1.21474 1.00478 0.96869 0.95204 1.21402 0.96319 0.94850 1.02242 1.22171 0.95527 1.01390 0.98531 1.20244 0.96802 0.88762 0.87699 0.92912 1.42487 1.27459 1.38028 1.28433 1.19256 1.03075 1.07402 1.06960 0.91167 1.24704 0.97678 1.00049 0.98498 1.69647 1.22667 1.43573 1.22461 0.86219 0.79494 0.82524 0.78132 1.21817 1.21891 1.20830 1.21729 0.91220 0.98726 1.02575 0.91544 0.90532 0.91360 0.91562 0.91417 0.91377 0.92339 0.90156 0.92946 0.91922 0.93756 0.78291 0.93556 0.91639 0.91148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 10.29 37.16 0.38 -0.93 16 2 C 0.06 0.69 6.19 37.16 0.23 0.92 16 3 O -0.36 -5.30 10.12 -39.24 -0.40 -5.69 16 4 C 0.47 7.78 7.25 36.01 0.26 8.04 16 5 O -0.51 -9.52 15.73 -18.75 -0.29 -9.82 16 6 C -0.08 -1.28 2.46 -91.77 -0.23 -1.50 16 7 H 0.12 2.14 6.51 -51.93 -0.34 1.80 16 8 C -0.10 -1.52 5.14 -26.74 -0.14 -1.65 16 9 C -0.11 -1.80 5.77 -26.73 -0.15 -1.96 16 10 C -0.14 -2.36 5.61 -26.73 -0.15 -2.51 16 11 C 0.17 3.43 3.10 -67.93 -0.21 3.22 16 12 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 13 N -0.72 -17.43 4.28 -53.43 -0.23 -17.66 16 14 C -0.24 -6.39 9.93 -15.06 -0.15 -6.54 16 15 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 16 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 17 N -0.93 -27.79 13.06 55.49 0.72 -27.07 16 18 Si 0.90 22.23 29.55 -169.99 -5.02 17.21 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 C -0.10 -1.84 4.18 -26.73 -0.11 -1.95 16 23 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16 27 H 0.07 0.80 8.13 -51.93 -0.42 0.37 16 28 H 0.07 0.94 8.11 -51.93 -0.42 0.51 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.08 1.55 7.60 -51.93 -0.39 1.15 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.38 9.73 6.06 -40.82 -0.25 9.48 16 35 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.06 1.07 8.10 -51.93 -0.42 0.65 16 37 H 0.07 1.34 8.10 -51.93 -0.42 0.92 16 LS Contribution 301.43 15.07 4.54 4.54 Total: -1.00 -30.34 301.43 -7.05 -37.39 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -6.01 Total: 6.44 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -0.36 Total: -5.34 kcal Atomic # 7 Polarization: -45.22 SS G_CDS: 0.50 Total: -44.73 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.69 Total: -15.51 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.34 -7.05 -37.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255337684.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.958 kcal (2) G-P(sol) polarization free energy of solvation -30.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds