Wall clock time and date at job start Thu Apr 9 2020 12:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45204 * 109.47064 * 2 1 4 4 C 1.34224 * 117.00145 * 180.02562 * 3 2 1 5 5 O 1.20824 * 120.00342 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.00007 * 179.97438 * 4 3 2 7 7 H 1.09002 * 109.47117 * 60.00045 * 6 4 3 8 8 C 1.52997 * 109.47433 * 300.00213 * 6 4 3 9 9 C 1.52993 * 109.47602 * 180.02562 * 8 6 4 10 10 C 1.53004 * 109.47226 * 59.99295 * 9 8 6 11 11 C 1.52997 * 109.47406 * 300.00825 * 10 9 8 12 12 H 1.08999 * 109.46983 * 179.97438 * 11 10 9 13 13 N 1.46506 * 109.46691 * 299.99403 * 11 10 9 14 14 C 1.36939 * 120.00073 * 274.72524 * 13 11 10 15 15 H 1.08004 * 119.99859 * 0.02562 * 14 13 11 16 16 C 1.38805 * 119.99849 * 180.02562 * 14 13 11 17 17 N 1.31622 * 120.00455 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00168 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47227 * 89.99498 * 18 16 14 20 20 H 1.48496 * 109.47434 * 209.99930 * 18 16 14 21 21 H 1.48507 * 109.46769 * 330.00032 * 18 16 14 22 22 C 1.52993 * 109.47602 * 59.99406 * 11 10 9 23 23 H 1.08998 * 109.47666 * 60.00024 * 1 2 3 24 24 H 1.09005 * 109.47100 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47047 * 299.99882 * 1 2 3 26 26 H 1.08998 * 109.47325 * 239.99645 * 2 1 3 27 27 H 1.09001 * 109.47427 * 119.99517 * 2 1 3 28 28 H 1.08999 * 109.46983 * 59.99767 * 8 6 4 29 29 H 1.09002 * 109.46832 * 300.00007 * 8 6 4 30 30 H 1.09002 * 109.47012 * 299.99871 * 9 8 6 31 31 H 1.08996 * 109.47599 * 179.97438 * 9 8 6 32 32 H 1.08995 * 109.47411 * 179.97438 * 10 9 8 33 33 H 1.09002 * 109.46655 * 60.00357 * 10 9 8 34 34 H 0.97005 * 119.99811 * 95.00317 * 13 11 10 35 35 H 0.97000 * 120.00679 * 179.97438 * 17 16 14 36 36 H 1.09002 * 109.47012 * 60.00129 * 22 11 10 37 37 H 1.08996 * 109.47599 * 180.02562 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5868 -0.0005 6 6 3.9206 2.9375 -0.0012 7 1 3.5849 3.4699 0.8888 8 6 3.4486 3.6841 -1.2504 9 6 4.0338 5.0977 -1.2514 10 6 5.5617 5.0172 -1.2521 11 6 6.0337 4.2706 -0.0029 12 1 7.1222 4.2128 -0.0037 13 7 5.5831 4.9865 1.1933 14 6 6.3295 6.0191 1.6951 15 1 7.2502 6.3060 1.2088 16 6 5.9028 6.6970 2.8286 17 7 4.7805 6.3477 3.4210 18 14 6.9206 8.1061 3.5128 19 1 6.4837 9.3809 2.8889 20 1 6.7319 8.1846 4.9836 21 1 8.3556 7.8730 3.2096 22 6 5.4485 2.8570 -0.0019 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.3601 3.7411 -1.2500 29 1 3.7842 3.1517 -2.1403 30 1 3.6985 5.6304 -0.3614 31 1 3.6979 5.6295 -2.1415 32 1 5.9786 6.0242 -1.2533 33 1 5.8969 4.4846 -2.1421 34 1 4.7580 4.7264 1.6321 35 1 4.4825 6.8212 4.2134 36 1 5.7838 2.3243 -0.8919 37 1 5.7844 2.3252 0.8883 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255337684.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:08 Heat of formation + Delta-G solvation = -116.665737 kcal Electronic energy + Delta-G solvation = -17965.715001 eV Core-core repulsion = 15127.716075 eV Total energy + Delta-G solvation = -2837.998926 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.78176 -39.56282 -37.63073 -35.49984 -33.16438 -32.50853 -31.79983 -29.90174 -25.75236 -25.48394 -23.60535 -23.21486 -21.76006 -20.02238 -19.35364 -18.54618 -17.59080 -17.45201 -16.54627 -16.02760 -15.46350 -15.32683 -15.12491 -14.92078 -14.38117 -13.70489 -13.63555 -13.45931 -13.32786 -12.89110 -12.84713 -12.81176 -12.62243 -12.51587 -12.25396 -12.14969 -11.80092 -11.68888 -11.52123 -11.32807 -11.22439 -10.96549 -10.75069 -8.93959 -7.89549 -5.16201 1.13335 1.49699 1.50378 1.58581 1.68106 2.59933 3.44242 3.56442 3.76776 3.82479 4.00761 4.06997 4.09563 4.23198 4.35245 4.35488 4.46433 4.53420 4.64458 4.79294 4.80712 4.87892 4.93100 5.07472 5.12291 5.13117 5.18211 5.34921 5.42138 5.44167 5.54504 5.60051 5.70519 6.33434 6.71000 7.39839 8.16308 8.39795 9.34269 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.030881 B = 0.005798 C = 0.005416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.486688 B = 4828.286732 C = 5168.568062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.049 3.951 3 O -0.360 6.360 4 C 0.474 3.526 5 O -0.536 6.536 6 C -0.075 4.075 7 H 0.093 0.907 8 C -0.093 4.093 9 C -0.106 4.106 10 C -0.129 4.129 11 C 0.168 3.832 12 H 0.047 0.953 13 N -0.731 5.731 14 C -0.232 4.232 15 H 0.075 0.925 16 C -0.075 4.075 17 N -0.971 5.971 18 Si 0.967 3.033 19 H -0.288 1.288 20 H -0.299 1.299 21 H -0.272 1.272 22 C -0.094 4.094 23 H 0.071 0.929 24 H 0.102 0.898 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.043 0.957 31 H 0.077 0.923 32 H 0.045 0.955 33 H 0.077 0.923 34 H 0.373 0.627 35 H 0.249 0.751 36 H 0.086 0.914 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.953 -9.867 -11.184 16.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.024 4.024 3 O -0.277 6.277 4 C 0.319 3.681 5 O -0.426 6.426 6 C -0.094 4.094 7 H 0.111 0.889 8 C -0.131 4.131 9 C -0.143 4.143 10 C -0.169 4.169 11 C 0.060 3.940 12 H 0.065 0.935 13 N -0.373 5.373 14 C -0.364 4.364 15 H 0.093 0.907 16 C -0.267 4.267 17 N -0.622 5.622 18 Si 0.797 3.203 19 H -0.216 1.216 20 H -0.226 1.226 21 H -0.197 1.197 22 C -0.133 4.133 23 H 0.090 0.910 24 H 0.121 0.879 25 H 0.083 0.917 26 H 0.092 0.908 27 H 0.082 0.918 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.062 0.938 31 H 0.096 0.904 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.206 0.794 35 H 0.058 0.942 36 H 0.104 0.896 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.614 -10.076 -11.171 16.434 hybrid contribution 0.302 0.583 1.137 1.313 sum -6.312 -9.493 -10.035 15.187 Atomic orbital electron populations 1.21823 0.90298 1.04422 1.03689 1.23329 0.97250 0.79297 1.02521 1.86540 1.23877 1.33778 1.83485 1.24006 0.80653 0.92625 0.70824 1.90606 1.61075 1.43974 1.46953 1.21053 0.96612 0.88911 1.02841 0.88887 1.21439 1.01243 0.95592 0.94803 1.21334 0.95522 0.95795 1.01690 1.22054 0.96253 1.00340 0.98249 1.20468 0.96611 0.89779 0.87130 0.93494 1.42646 1.26912 1.37856 1.29847 1.19624 1.02989 1.07363 1.06464 0.90725 1.25438 0.98996 1.02843 0.99405 1.69801 1.24456 1.45023 1.22954 0.85226 0.78579 0.79709 0.76782 1.21559 1.22628 1.19667 1.21578 0.92008 0.97161 1.02519 0.90960 0.87913 0.91745 0.90810 0.91843 0.90045 0.90115 0.93774 0.90396 0.93616 0.90477 0.79371 0.94224 0.89571 0.93256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 10.29 71.98 0.74 -1.44 16 2 C 0.05 1.08 6.19 71.98 0.45 1.52 16 3 O -0.36 -10.22 10.12 -51.36 -0.52 -10.74 16 4 C 0.47 15.30 7.25 71.24 0.52 15.82 16 5 O -0.54 -19.40 15.73 21.97 0.35 -19.05 16 6 C -0.07 -2.45 2.46 -11.54 -0.03 -2.47 16 7 H 0.09 3.52 6.51 -2.39 -0.02 3.50 16 8 C -0.09 -2.54 5.14 30.59 0.16 -2.39 16 9 C -0.11 -3.27 5.77 30.59 0.18 -3.10 16 10 C -0.13 -4.25 5.61 30.59 0.17 -4.08 16 11 C 0.17 6.52 3.10 44.99 0.14 6.66 16 12 H 0.05 1.86 8.08 -2.39 -0.02 1.84 16 13 N -0.73 -35.91 4.28 -322.95 -1.38 -37.29 16 14 C -0.23 -12.71 9.93 84.03 0.83 -11.87 16 15 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 16 C -0.07 -4.27 5.50 84.86 0.47 -3.80 16 17 N -0.97 -59.16 13.06 21.65 0.28 -58.87 16 18 Si 0.97 46.20 29.55 68.60 2.03 48.22 16 19 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 20 H -0.30 -14.52 7.11 99.48 0.71 -13.82 16 21 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 22 C -0.09 -3.27 4.18 30.59 0.13 -3.14 16 23 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 25 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.07 1.50 8.13 -2.39 -0.02 1.48 16 27 H 0.06 1.43 8.13 -2.39 -0.02 1.41 16 28 H 0.08 2.03 8.11 -2.39 -0.02 2.01 16 29 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.04 1.69 7.60 -2.39 -0.02 1.68 16 31 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.37 19.62 6.06 -92.70 -0.56 19.06 16 35 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 36 H 0.09 2.63 8.10 -2.39 -0.02 2.61 16 37 H 0.05 1.89 8.10 -2.39 -0.02 1.88 16 Total: -1.00 -65.29 301.43 4.98 -60.31 By element: Atomic # 1 Polarization: 25.23 SS G_CDS: 0.48 Total: 25.71 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: 3.75 Total: -8.29 kcal Atomic # 7 Polarization: -95.06 SS G_CDS: -1.10 Total: -96.16 kcal Atomic # 8 Polarization: -29.62 SS G_CDS: -0.17 Total: -29.79 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.22 kcal Total: -65.29 4.98 -60.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255337684.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.356 kcal (2) G-P(sol) polarization free energy of solvation -65.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds