Wall clock time and date at job start Thu Apr 9 2020 12:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45200 * 109.47280 * 2 1 4 4 C 1.34228 * 116.99796 * 180.02562 * 3 2 1 5 5 O 1.20821 * 120.00423 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99622 * 179.97438 * 4 3 2 7 7 H 1.09002 * 109.46995 * 60.00219 * 6 4 3 8 8 C 1.52997 * 109.47475 * 300.00176 * 6 4 3 9 9 C 1.52993 * 109.47283 * 180.02562 * 8 6 4 10 10 C 1.53000 * 109.47512 * 59.99789 * 9 8 6 11 11 C 1.52995 * 109.46898 * 299.99835 * 10 9 8 12 12 H 1.09002 * 109.47544 * 299.99985 * 11 10 9 13 13 N 1.46499 * 109.47258 * 179.97438 * 11 10 9 14 14 C 1.36935 * 119.99926 * 85.00376 * 13 11 10 15 15 H 1.08005 * 119.99877 * 359.97438 * 14 13 11 16 16 C 1.38811 * 120.00369 * 179.73019 * 14 13 11 17 17 N 1.31617 * 119.99773 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00451 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47154 * 89.99247 * 18 16 14 20 20 H 1.48496 * 109.47375 * 209.99772 * 18 16 14 21 21 H 1.48502 * 109.46736 * 329.99467 * 18 16 14 22 22 C 1.53000 * 109.47189 * 180.02562 * 6 4 3 23 23 H 1.08996 * 109.47188 * 300.00103 * 1 2 3 24 24 H 1.09000 * 109.46909 * 60.00189 * 1 2 3 25 25 H 1.09006 * 109.47122 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47234 * 239.98994 * 2 1 3 27 27 H 1.09004 * 109.47316 * 120.00103 * 2 1 3 28 28 H 1.09009 * 109.46732 * 299.99759 * 8 6 4 29 29 H 1.08998 * 109.47374 * 59.99701 * 8 6 4 30 30 H 1.09008 * 109.47625 * 179.97438 * 9 8 6 31 31 H 1.08997 * 109.47189 * 299.99530 * 9 8 6 32 32 H 1.09003 * 109.47050 * 180.02562 * 10 9 8 33 33 H 1.09002 * 109.47010 * 60.00146 * 10 9 8 34 34 H 0.97005 * 120.00261 * 265.00500 * 13 11 10 35 35 H 0.97004 * 120.00382 * 180.02562 * 17 16 14 36 36 H 1.08997 * 109.47105 * 59.99727 * 22 6 4 37 37 H 1.09009 * 109.46927 * 300.00132 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9373 -0.0012 7 1 3.5851 3.4697 0.8888 8 6 3.4487 3.6840 -1.2504 9 6 4.0340 5.0975 -1.2513 10 6 5.5619 5.0170 -1.2521 11 6 6.0339 4.2704 -0.0028 12 1 5.6986 4.8030 0.8872 13 7 7.4968 4.1927 -0.0039 14 6 8.2379 5.2299 0.4963 15 1 7.7438 6.1055 0.8911 16 6 9.6239 5.1540 0.5005 17 7 10.2258 4.0848 0.0242 18 14 10.6348 6.5686 1.1833 19 1 10.8665 6.3561 2.6347 20 1 11.9399 6.6305 0.4775 21 1 9.9016 7.8440 0.9807 22 6 5.4486 2.8573 -0.0023 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5140 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 3.7844 3.1515 -2.1404 29 1 2.3603 3.7410 -1.2500 30 1 3.6982 5.6294 -2.1415 31 1 3.6988 5.6302 -0.3614 32 1 5.9789 6.0241 -1.2523 33 1 5.8972 4.4844 -2.1421 34 1 7.9405 3.4065 -0.3588 35 1 11.1944 4.0315 0.0274 36 1 5.7839 2.3250 -0.8925 37 1 5.7853 2.3252 0.8875 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255337687.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:12 Heat of formation + Delta-G solvation = -102.105052 kcal Electronic energy + Delta-G solvation = -17587.147940 eV Core-core repulsion = 14749.780412 eV Total energy + Delta-G solvation = -2837.367528 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.59769 -38.08635 -36.46076 -34.05318 -31.99845 -31.15576 -30.63864 -27.94898 -24.53089 -23.67994 -22.62002 -21.48685 -20.41378 -19.42962 -17.51942 -16.99223 -16.55136 -16.34986 -14.86226 -14.50690 -14.19808 -13.85299 -13.60886 -13.45751 -13.18840 -12.90117 -12.64037 -12.18243 -12.10667 -11.92650 -11.71820 -11.06659 -10.97363 -10.83454 -10.73944 -10.60484 -10.39103 -10.30368 -10.13433 -10.04891 -9.68250 -9.56235 -8.84361 -6.92239 -5.72697 -3.01646 2.31577 2.68193 3.45820 3.50645 3.52541 4.59975 4.63748 4.73674 4.82006 4.93101 4.93255 5.08489 5.26915 5.48502 5.54842 5.56160 5.57639 5.69284 5.73219 5.75422 5.84687 5.96762 6.03278 6.12809 6.29378 6.38610 6.46393 6.56916 6.61945 6.74848 7.00920 7.14986 7.73071 7.85543 8.45695 9.56630 10.15087 10.49778 11.50004 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.045052 B = 0.004735 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.356381 B = 5912.232820 C = 6294.632832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.360 6.360 4 C 0.465 3.535 5 O -0.504 6.504 6 C -0.073 4.073 7 H 0.107 0.893 8 C -0.106 4.106 9 C -0.115 4.115 10 C -0.139 4.139 11 C 0.181 3.819 12 H 0.048 0.952 13 N -0.724 5.724 14 C -0.238 4.238 15 H 0.071 0.929 16 C -0.014 4.014 17 N -0.932 5.932 18 Si 0.906 3.094 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.282 1.282 22 C -0.108 4.108 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.068 0.932 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.540 -4.112 -1.505 20.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.278 6.278 4 C 0.307 3.693 5 O -0.391 6.391 6 C -0.093 4.093 7 H 0.125 0.875 8 C -0.144 4.144 9 C -0.153 4.153 10 C -0.180 4.180 11 C 0.071 3.929 12 H 0.066 0.934 13 N -0.365 5.365 14 C -0.369 4.369 15 H 0.089 0.911 16 C -0.210 4.210 17 N -0.581 5.581 18 Si 0.737 3.263 19 H -0.218 1.218 20 H -0.218 1.218 21 H -0.208 1.208 22 C -0.146 4.146 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.096 0.904 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.087 0.913 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -19.243 -4.282 -1.421 19.765 hybrid contribution 0.818 0.235 0.237 0.883 sum -18.426 -4.048 -1.184 18.902 Atomic orbital electron populations 1.21793 0.92801 1.02777 1.03462 1.22984 0.95213 0.80788 1.02523 1.86521 1.25101 1.31877 1.84266 1.24077 0.80132 0.93148 0.71908 1.90669 1.60342 1.43238 1.44849 1.21150 0.97501 0.88717 1.01914 0.87486 1.21513 1.00300 0.96681 0.95915 1.21534 0.97247 0.95001 1.01547 1.22316 0.92837 1.01968 1.00829 1.20155 0.85677 0.91826 0.95277 0.93421 1.42413 0.98960 1.21206 1.73901 1.19242 0.88567 0.96581 1.32517 0.91146 1.24748 0.96573 0.97715 1.01986 1.69669 1.08509 1.28120 1.51789 0.86201 0.79869 0.81730 0.78466 1.21769 1.21832 1.20770 1.21754 0.89919 0.99453 1.03509 0.91520 0.91514 0.90439 0.91381 0.91374 0.91650 0.91256 0.92202 0.92002 0.91800 0.92567 0.78203 0.93533 0.91314 0.91053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.29 37.16 0.38 -0.69 16 2 C 0.06 0.60 6.19 37.16 0.23 0.83 16 3 O -0.36 -4.58 10.12 -39.25 -0.40 -4.98 16 4 C 0.46 6.92 7.26 36.01 0.26 7.18 16 5 O -0.50 -9.06 15.73 -18.75 -0.29 -9.35 16 6 C -0.07 -1.03 2.63 -91.77 -0.24 -1.27 16 7 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 8 C -0.11 -1.33 5.13 -26.74 -0.14 -1.47 16 9 C -0.12 -1.52 5.92 -26.73 -0.16 -1.68 16 10 C -0.14 -2.43 5.50 -26.73 -0.15 -2.58 16 11 C 0.18 3.58 2.77 -67.96 -0.19 3.39 16 12 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 13 N -0.72 -18.43 5.12 -53.45 -0.27 -18.71 16 14 C -0.24 -6.64 9.93 -15.06 -0.15 -6.79 16 15 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 16 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 17 N -0.93 -28.60 13.06 55.49 0.72 -27.88 16 18 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 19 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 20 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 C -0.11 -1.91 3.96 -26.75 -0.11 -2.01 16 23 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 27 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 28 H 0.06 0.85 8.14 -51.92 -0.42 0.42 16 29 H 0.07 0.74 8.11 -51.93 -0.42 0.32 16 30 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.38 10.52 7.80 -40.82 -0.32 10.20 16 35 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 36 H 0.07 1.29 8.10 -51.93 -0.42 0.87 16 37 H 0.07 1.36 8.10 -51.92 -0.42 0.94 16 LS Contribution 305.86 15.07 4.61 4.61 Total: -1.00 -31.75 305.86 -7.20 -38.95 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -6.20 Total: 5.44 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: -0.35 Total: -5.60 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: 0.45 Total: -46.59 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -0.69 Total: -14.33 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.75 -7.20 -38.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255337687.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.158 kcal (2) G-P(sol) polarization free energy of solvation -31.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds