Wall clock time and date at job start Thu Apr 9 2020 12:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45200 * 109.47280 * 2 1 4 4 C 1.34228 * 116.99796 * 180.02562 * 3 2 1 5 5 O 1.20821 * 120.00423 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99622 * 179.97438 * 4 3 2 7 7 H 1.09002 * 109.46995 * 60.00219 * 6 4 3 8 8 C 1.52997 * 109.47475 * 300.00176 * 6 4 3 9 9 C 1.52993 * 109.47283 * 180.02562 * 8 6 4 10 10 C 1.53000 * 109.47512 * 59.99789 * 9 8 6 11 11 C 1.52995 * 109.46898 * 299.99835 * 10 9 8 12 12 H 1.09002 * 109.47544 * 299.99985 * 11 10 9 13 13 N 1.46499 * 109.47258 * 179.97438 * 11 10 9 14 14 C 1.36935 * 119.99926 * 85.00376 * 13 11 10 15 15 H 1.08005 * 119.99877 * 359.97438 * 14 13 11 16 16 C 1.38811 * 120.00369 * 179.73019 * 14 13 11 17 17 N 1.31617 * 119.99773 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00451 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47154 * 89.99247 * 18 16 14 20 20 H 1.48496 * 109.47375 * 209.99772 * 18 16 14 21 21 H 1.48502 * 109.46736 * 329.99467 * 18 16 14 22 22 C 1.53000 * 109.47189 * 180.02562 * 6 4 3 23 23 H 1.08996 * 109.47188 * 300.00103 * 1 2 3 24 24 H 1.09000 * 109.46909 * 60.00189 * 1 2 3 25 25 H 1.09006 * 109.47122 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47234 * 239.98994 * 2 1 3 27 27 H 1.09004 * 109.47316 * 120.00103 * 2 1 3 28 28 H 1.09009 * 109.46732 * 299.99759 * 8 6 4 29 29 H 1.08998 * 109.47374 * 59.99701 * 8 6 4 30 30 H 1.09008 * 109.47625 * 179.97438 * 9 8 6 31 31 H 1.08997 * 109.47189 * 299.99530 * 9 8 6 32 32 H 1.09003 * 109.47050 * 180.02562 * 10 9 8 33 33 H 1.09002 * 109.47010 * 60.00146 * 10 9 8 34 34 H 0.97005 * 120.00261 * 265.00500 * 13 11 10 35 35 H 0.97004 * 120.00382 * 180.02562 * 17 16 14 36 36 H 1.08997 * 109.47105 * 59.99727 * 22 6 4 37 37 H 1.09009 * 109.46927 * 300.00132 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9373 -0.0012 7 1 3.5851 3.4697 0.8888 8 6 3.4487 3.6840 -1.2504 9 6 4.0340 5.0975 -1.2513 10 6 5.5619 5.0170 -1.2521 11 6 6.0339 4.2704 -0.0028 12 1 5.6986 4.8030 0.8872 13 7 7.4968 4.1927 -0.0039 14 6 8.2379 5.2299 0.4963 15 1 7.7438 6.1055 0.8911 16 6 9.6239 5.1540 0.5005 17 7 10.2258 4.0848 0.0242 18 14 10.6348 6.5686 1.1833 19 1 10.8665 6.3561 2.6347 20 1 11.9399 6.6305 0.4775 21 1 9.9016 7.8440 0.9807 22 6 5.4486 2.8573 -0.0023 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5140 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 3.7844 3.1515 -2.1404 29 1 2.3603 3.7410 -1.2500 30 1 3.6982 5.6294 -2.1415 31 1 3.6988 5.6302 -0.3614 32 1 5.9789 6.0241 -1.2523 33 1 5.8972 4.4844 -2.1421 34 1 7.9405 3.4065 -0.3588 35 1 11.1944 4.0315 0.0274 36 1 5.7839 2.3250 -0.8925 37 1 5.7853 2.3252 0.8875 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255337687.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:11 Heat of formation + Delta-G solvation = -121.465211 kcal Electronic energy + Delta-G solvation = -17587.987459 eV Core-core repulsion = 14749.780412 eV Total energy + Delta-G solvation = -2838.207047 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.76659 -39.41260 -37.63429 -35.87577 -33.27807 -32.60558 -31.82999 -29.67727 -25.78449 -25.49962 -23.56523 -22.82984 -21.67033 -20.80568 -19.11354 -18.63741 -17.61036 -17.54595 -16.49152 -15.95211 -15.48605 -15.30673 -15.08024 -14.84621 -14.43895 -14.11413 -13.71601 -13.45663 -13.39274 -12.89744 -12.86601 -12.80529 -12.52054 -12.30451 -12.17338 -12.05520 -11.94841 -11.64467 -11.54431 -11.47458 -11.34401 -11.06566 -10.80628 -9.00112 -7.92524 -5.21726 1.14462 1.47692 1.50001 1.58205 1.64961 2.57564 3.40607 3.52409 3.66748 3.78738 4.01444 4.08655 4.10703 4.29673 4.31177 4.36143 4.46716 4.52723 4.57576 4.62109 4.75987 4.88874 4.94737 5.09709 5.14350 5.15647 5.21933 5.26391 5.36866 5.43353 5.51872 5.56657 5.67601 6.29338 6.72001 7.34340 8.10830 8.33746 9.31537 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.045052 B = 0.004735 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.356381 B = 5912.232820 C = 6294.632832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.049 3.951 3 O -0.353 6.353 4 C 0.470 3.530 5 O -0.543 6.543 6 C -0.068 4.068 7 H 0.131 0.869 8 C -0.100 4.100 9 C -0.105 4.105 10 C -0.131 4.131 11 C 0.175 3.825 12 H 0.052 0.948 13 N -0.742 5.742 14 C -0.236 4.236 15 H 0.080 0.920 16 C -0.081 4.081 17 N -0.974 5.974 18 Si 0.974 3.026 19 H -0.288 1.288 20 H -0.298 1.298 21 H -0.266 1.266 22 C -0.097 4.097 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.098 0.902 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.101 0.899 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.046 0.954 33 H 0.041 0.959 34 H 0.369 0.631 35 H 0.250 0.750 36 H 0.050 0.950 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.266 -2.909 -1.334 22.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.025 4.025 3 O -0.270 6.270 4 C 0.315 3.685 5 O -0.433 6.433 6 C -0.087 4.087 7 H 0.149 0.851 8 C -0.137 4.137 9 C -0.143 4.143 10 C -0.172 4.172 11 C 0.067 3.933 12 H 0.070 0.930 13 N -0.381 5.381 14 C -0.368 4.368 15 H 0.098 0.902 16 C -0.273 4.273 17 N -0.625 5.625 18 Si 0.803 3.197 19 H -0.215 1.215 20 H -0.225 1.225 21 H -0.191 1.191 22 C -0.136 4.136 23 H 0.089 0.911 24 H 0.090 0.910 25 H 0.117 0.883 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.119 0.881 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.200 0.800 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -22.054 -3.051 -1.247 22.299 hybrid contribution 1.562 -0.204 0.186 1.586 sum -20.492 -3.255 -1.061 20.776 Atomic orbital electron populations 1.21810 0.89951 1.04350 1.03925 1.23310 0.97384 0.79463 1.02296 1.86508 1.23469 1.33452 1.83554 1.24117 0.80709 0.92822 0.70891 1.90664 1.61380 1.44453 1.46825 1.21091 0.94471 0.89065 1.04094 0.85150 1.21513 1.02082 0.95647 0.94470 1.21474 0.93285 0.95935 1.03559 1.22140 0.96436 1.00036 0.98555 1.20415 0.82825 0.93449 0.96579 0.93024 1.42683 1.01365 1.20174 1.73843 1.19665 0.89070 0.97067 1.30988 0.90204 1.25604 0.97922 1.00381 1.03344 1.69844 1.08257 1.30383 1.54016 0.85121 0.77864 0.79263 0.77424 1.21529 1.22469 1.19052 1.21526 0.92981 0.97473 1.01570 0.91084 0.90956 0.88337 0.91659 0.91753 0.92271 0.88066 0.89863 0.90316 0.93480 0.93969 0.79985 0.94169 0.93114 0.93265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 10.29 71.98 0.74 -0.89 16 2 C 0.05 0.92 6.19 71.98 0.45 1.37 16 3 O -0.35 -8.20 10.12 -51.39 -0.52 -8.72 16 4 C 0.47 13.45 7.26 71.24 0.52 13.96 16 5 O -0.54 -19.66 15.73 21.98 0.35 -19.32 16 6 C -0.07 -1.79 2.63 -11.54 -0.03 -1.82 16 7 H 0.13 2.88 8.14 -2.39 -0.02 2.86 16 8 C -0.10 -2.18 5.13 30.59 0.16 -2.02 16 9 C -0.10 -2.41 5.92 30.59 0.18 -2.23 16 10 C -0.13 -4.48 5.50 30.59 0.17 -4.31 16 11 C 0.18 6.94 2.77 44.98 0.12 7.07 16 12 H 0.05 2.00 8.08 -2.39 -0.02 1.99 16 13 N -0.74 -38.68 5.12 -323.02 -1.65 -40.34 16 14 C -0.24 -13.29 9.93 84.03 0.83 -12.46 16 15 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 16 C -0.08 -4.73 5.50 84.86 0.47 -4.27 16 17 N -0.97 -61.49 13.06 21.65 0.28 -61.21 16 18 Si 0.97 46.80 29.55 68.60 2.03 48.83 16 19 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 20 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 22 C -0.10 -3.47 3.96 30.58 0.12 -3.35 16 23 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.07 0.76 8.14 -2.39 -0.02 0.75 16 25 H 0.10 0.73 8.14 -2.38 -0.02 0.71 16 26 H 0.06 1.27 8.13 -2.39 -0.02 1.25 16 27 H 0.06 1.26 8.13 -2.38 -0.02 1.24 16 28 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 29 H 0.10 1.68 8.11 -2.39 -0.02 1.66 16 30 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 31 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.05 1.74 8.14 -2.39 -0.02 1.73 16 33 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.37 21.12 7.80 -92.70 -0.72 20.39 16 35 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 36 H 0.05 1.97 8.10 -2.39 -0.02 1.95 16 37 H 0.05 1.95 8.10 -2.38 -0.02 1.93 16 Total: -1.00 -70.09 305.86 4.52 -65.57 By element: Atomic # 1 Polarization: 23.82 SS G_CDS: 0.31 Total: 24.13 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: 3.73 Total: -8.95 kcal Atomic # 7 Polarization: -100.18 SS G_CDS: -1.37 Total: -101.55 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -0.17 Total: -28.04 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.83 kcal Total: -70.09 4.52 -65.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255337687.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.892 kcal (2) G-P(sol) polarization free energy of solvation -70.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds