Wall clock time and date at job start Thu Apr 9 2020 12:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.47063 * 2 1 4 4 C 1.50700 * 109.46842 * 240.00141 * 2 1 3 5 5 H 1.08001 * 119.99598 * 239.99846 * 4 2 1 6 6 C 1.37869 * 120.00438 * 60.00126 * 4 2 1 7 7 N 1.31517 * 120.00021 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00516 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46708 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47067 * 119.99917 * 8 6 4 11 11 H 1.48494 * 109.47345 * 240.00319 * 8 6 4 12 12 C 1.50696 * 109.46753 * 120.00373 * 2 1 3 13 13 O 1.21282 * 120.00214 * 107.35478 * 12 2 1 14 14 N 1.34780 * 119.99781 * 287.07158 * 12 2 1 15 15 C 1.46921 * 120.63176 * 355.48901 * 14 12 2 16 16 C 1.52757 * 109.01205 * 233.58061 * 15 14 12 17 17 C 1.53044 * 109.38519 * 305.59300 * 16 15 14 18 18 C 1.53037 * 109.53704 * 61.23359 * 17 16 15 19 19 C 1.46926 * 120.62669 * 175.77021 * 14 12 2 20 20 H 1.09003 * 109.58669 * 246.15515 * 19 14 12 21 21 C 1.52996 * 109.58987 * 6.58275 * 19 14 12 22 22 O 1.42896 * 109.47300 * 64.50695 * 21 19 14 23 23 H 1.08995 * 109.46921 * 294.23453 * 1 2 3 24 24 H 1.09000 * 109.47026 * 54.23702 * 1 2 3 25 25 H 1.09000 * 109.46897 * 174.23811 * 1 2 3 26 26 H 0.96992 * 120.00499 * 180.02562 * 7 6 4 27 27 H 1.08994 * 109.58683 * 353.42302 * 15 14 12 28 28 H 1.09011 * 109.58502 * 113.84042 * 15 14 12 29 29 H 1.08997 * 109.56750 * 185.55037 * 16 15 14 30 30 H 1.09008 * 109.38450 * 65.51389 * 16 15 14 31 31 H 1.09008 * 109.45615 * 301.21899 * 17 16 15 32 32 H 1.08990 * 109.45045 * 181.25003 * 17 16 15 33 33 H 1.09004 * 109.49771 * 178.68701 * 18 17 16 34 34 H 1.08995 * 109.49752 * 58.59296 * 18 17 16 35 35 H 1.08999 * 109.47044 * 184.50807 * 21 19 14 36 36 H 1.09003 * 109.47156 * 304.50638 * 21 19 14 37 37 H 0.96699 * 113.99847 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9437 0.8302 -2.6034 8 14 2.3225 -1.1195 -4.0080 9 1 3.1473 -2.2864 -3.6038 10 1 1.1677 -1.5865 -4.8165 11 1 3.1473 -0.1858 -4.8160 12 6 2.0323 -0.7105 1.2304 13 8 2.5298 -1.8123 1.1338 14 7 1.9338 -0.1190 2.4375 15 6 1.4306 1.2560 2.5585 16 6 2.4444 2.0901 3.3394 17 6 2.7399 1.4084 4.6775 18 6 3.3425 0.0246 4.4248 19 6 2.3335 -0.8349 3.6567 20 1 1.4569 -1.0136 4.2795 21 6 2.9789 -2.1698 3.2794 22 8 4.1891 -1.9271 2.5594 23 1 -0.3633 0.4218 0.9371 24 1 -0.3633 0.6006 -0.8339 25 1 -0.3633 -1.0225 -0.1032 26 1 0.7090 1.1614 -3.4843 27 1 1.2948 1.6841 1.5654 28 1 0.4787 1.2513 3.0898 29 1 2.0371 3.0848 3.5200 30 1 3.3655 2.1734 2.7624 31 1 1.8144 1.3036 5.2438 32 1 3.4463 2.0140 5.2451 33 1 3.5742 -0.4509 5.3779 34 1 4.2549 0.1268 3.8374 35 1 3.2018 -2.7343 4.1848 36 1 2.2927 -2.7414 2.6545 37 1 4.6532 -2.7309 2.2879 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261665067.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:16 Heat of formation + Delta-G solvation = -78.795833 kcal Electronic energy + Delta-G solvation = -18851.232752 eV Core-core repulsion = 16014.875989 eV Total energy + Delta-G solvation = -2836.356764 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.86185 -36.69922 -35.83570 -33.67071 -32.28034 -31.42471 -29.94881 -26.43981 -25.09563 -24.06205 -22.73148 -21.30699 -20.15758 -18.08978 -16.91089 -16.25971 -15.88100 -15.04517 -14.59880 -14.44466 -14.28582 -13.86259 -13.45349 -12.99644 -12.93939 -12.65226 -12.26040 -12.02797 -11.54557 -11.17608 -11.05068 -10.93532 -10.71400 -10.58890 -10.56759 -10.34655 -10.25846 -10.09661 -9.86284 -9.30415 -8.86758 -8.37096 -7.96034 -7.69432 -5.97776 -3.99183 3.35091 3.42361 3.50151 3.72780 3.90690 4.51126 4.79994 5.01419 5.04032 5.11133 5.36086 5.39349 5.51675 5.65205 5.73723 5.80709 5.96789 6.01844 6.08218 6.08646 6.24316 6.33561 6.38391 6.43852 6.65298 6.72479 6.90147 7.02986 7.30065 7.54386 7.81918 8.06799 8.21188 8.31300 8.51599 9.09005 9.43172 9.65746 11.10529 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.030733 B = 0.007980 C = 0.006937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.857619 B = 3507.812631 C = 4035.603700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.030 3.970 3 H 0.046 0.954 4 C -0.494 4.494 5 H 0.073 0.927 6 C 0.056 3.944 7 N -0.898 5.898 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.524 3.476 13 O -0.523 6.523 14 N -0.620 5.620 15 C 0.111 3.889 16 C -0.136 4.136 17 C -0.117 4.117 18 C -0.127 4.127 19 C 0.146 3.854 20 H 0.070 0.930 21 C 0.087 3.913 22 O -0.549 6.549 23 H 0.013 0.987 24 H 0.088 0.912 25 H 0.032 0.968 26 H 0.259 0.741 27 H 0.097 0.903 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.017 0.983 36 H 0.077 0.923 37 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.073 0.744 13.481 13.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.010 3.990 3 H 0.064 0.936 4 C -0.533 4.533 5 H 0.091 0.909 6 C -0.144 4.144 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.316 3.684 13 O -0.399 6.399 14 N -0.356 5.356 15 C -0.013 4.013 16 C -0.175 4.175 17 C -0.155 4.155 18 C -0.165 4.165 19 C 0.043 3.957 20 H 0.087 0.913 21 C 0.009 3.991 22 O -0.353 6.353 23 H 0.032 0.968 24 H 0.107 0.893 25 H 0.051 0.949 26 H 0.069 0.931 27 H 0.115 0.885 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.035 0.965 36 H 0.095 0.905 37 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 1.086 0.862 13.362 13.434 hybrid contribution 0.383 -0.816 -0.793 1.200 sum 1.469 0.046 12.569 12.654 Atomic orbital electron populations 1.21734 0.96548 1.00714 0.99762 1.18863 0.93961 0.96602 0.89624 0.93584 1.21183 1.30581 1.12468 0.89020 0.90911 1.24946 0.95249 0.95112 0.99051 1.69892 1.37444 1.23194 1.23273 0.86428 0.78564 0.79765 0.82659 1.19650 1.21145 1.21147 1.21770 0.76356 0.86390 0.83903 1.90423 1.43200 1.21410 1.84851 1.48261 1.66777 1.14525 1.06078 1.21599 0.95453 0.82147 1.02075 1.21864 1.00539 0.98535 0.96532 1.21502 1.00448 0.96374 0.97127 1.21885 0.99818 0.95266 0.99562 1.21172 0.95742 0.91988 0.86840 0.91252 1.22248 0.88860 0.95351 0.92642 1.86487 1.37073 1.35060 1.76714 0.96828 0.89312 0.94906 0.93147 0.88477 0.92592 0.91265 0.91428 0.92331 0.92280 0.92034 0.90492 0.96476 0.90548 0.78713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 8.58 37.16 0.32 -2.75 16 2 C 0.03 0.77 1.78 -92.92 -0.17 0.61 16 3 H 0.05 1.22 6.76 -51.93 -0.35 0.87 16 4 C -0.49 -14.20 8.36 -34.44 -0.29 -14.49 16 5 H 0.07 2.21 6.83 -52.49 -0.36 1.85 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 7 N -0.90 -25.54 11.39 55.43 0.63 -24.91 16 8 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 9 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 C 0.52 12.23 6.62 -10.99 -0.07 12.15 16 13 O -0.52 -13.12 9.89 -19.25 -0.19 -13.31 16 14 N -0.62 -11.66 2.98 -165.49 -0.49 -12.15 16 15 C 0.11 1.77 5.19 -3.94 -0.02 1.75 16 16 C -0.14 -1.84 6.06 -26.83 -0.16 -2.00 16 17 C -0.12 -1.41 5.89 -26.69 -0.16 -1.57 16 18 C -0.13 -1.77 5.26 -26.61 -0.14 -1.91 16 19 C 0.15 2.36 3.29 -67.60 -0.22 2.14 16 20 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 21 C 0.09 1.47 5.80 37.16 0.22 1.68 16 22 O -0.55 -10.29 10.26 -60.04 -0.62 -10.91 16 23 H 0.01 0.26 6.72 -51.93 -0.35 -0.09 16 24 H 0.09 2.27 6.25 -51.93 -0.32 1.95 16 25 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 27 H 0.10 1.72 5.22 -51.93 -0.27 1.45 16 28 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 1.02 8.14 -51.92 -0.42 0.60 16 31 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.08 1.26 7.39 -51.93 -0.38 0.88 16 35 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.08 1.49 6.05 -51.98 -0.31 1.17 16 37 H 0.37 5.70 9.12 45.56 0.42 6.12 16 LS Contribution 283.42 15.07 4.27 4.27 Total: -1.00 -31.43 283.42 -7.08 -38.51 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -4.88 Total: 4.30 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -0.79 Total: -2.89 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: 0.14 Total: -37.06 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -0.81 Total: -24.22 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.43 -7.08 -38.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261665067.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.287 kcal (2) G-P(sol) polarization free energy of solvation -31.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds