Wall clock time and date at job start Thu Apr 9 2020 12:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47302 * 2 1 4 4 C 1.50702 * 109.47530 * 120.00418 * 2 1 3 5 5 H 1.08001 * 120.00305 * 119.99351 * 4 2 1 6 6 C 1.37880 * 119.99727 * 300.00208 * 4 2 1 7 7 N 1.31519 * 120.00030 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 119.99779 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47338 * 60.00015 * 8 6 4 10 10 H 1.48507 * 109.46822 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47041 * 299.99521 * 8 6 4 12 12 C 1.50705 * 109.47021 * 240.00049 * 2 1 3 13 13 O 1.21280 * 120.00203 * 263.45865 * 12 2 1 14 14 N 1.34786 * 119.99634 * 83.45862 * 12 2 1 15 15 C 1.46930 * 120.60295 * 5.33040 * 14 12 2 16 16 C 1.53196 * 108.77034 * 233.53266 * 15 14 12 17 17 C 1.53047 * 109.33911 * 305.41476 * 16 15 14 18 18 C 1.53040 * 109.53529 * 61.35046 * 17 16 15 19 19 C 1.46927 * 120.62612 * 185.31057 * 14 12 2 20 20 H 1.09001 * 109.57990 * 246.21886 * 19 14 12 21 21 C 1.52995 * 109.59043 * 6.64479 * 19 14 12 22 22 O 1.42897 * 109.47272 * 61.78684 * 21 19 14 23 23 H 1.09004 * 109.46800 * 182.32202 * 1 2 3 24 24 H 1.08992 * 109.46659 * 302.32313 * 1 2 3 25 25 H 1.09001 * 109.47118 * 62.32201 * 1 2 3 26 26 H 0.96991 * 119.99995 * 180.02562 * 7 6 4 27 27 H 1.09006 * 109.56113 * 113.76620 * 15 14 12 28 28 H 1.08996 * 109.61906 * 353.33313 * 15 14 12 29 29 H 1.08994 * 109.49468 * 185.45096 * 16 15 14 30 30 H 1.08998 * 109.49497 * 65.38433 * 16 15 14 31 31 H 1.08991 * 109.45999 * 181.36603 * 17 16 15 32 32 H 1.08999 * 109.46237 * 301.33354 * 17 16 15 33 33 H 1.08997 * 109.49909 * 58.58344 * 18 17 16 34 34 H 1.08999 * 109.49963 * 178.68271 * 18 17 16 35 35 H 1.08997 * 109.47511 * 181.79027 * 21 19 14 36 36 H 1.09005 * 109.46840 * 301.78861 * 21 19 14 37 37 H 0.96698 * 114.00451 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7105 1.2304 5 1 2.6534 -1.5886 1.1313 6 6 1.6994 -0.2395 2.4827 7 7 0.9436 0.8301 2.6035 8 14 2.3216 -1.1206 4.0078 9 1 3.8066 -1.1211 4.0080 10 1 1.8271 -0.4201 5.2204 11 1 1.8260 -2.5204 4.0075 12 6 2.0324 -0.7104 -1.2305 13 8 2.3473 -1.8800 -1.1694 14 7 2.1316 -0.0459 -2.3990 15 6 1.8656 1.3977 -2.4634 16 6 0.8174 1.6578 -3.5499 17 6 1.2930 1.0461 -4.8698 18 6 1.4522 -0.4670 -4.7045 19 6 2.5081 -0.7513 -3.6316 20 1 3.4806 -0.3965 -3.9730 21 6 2.5734 -2.2559 -3.3621 22 8 1.2840 -2.7247 -2.9628 23 1 -0.3633 -1.0269 0.0416 24 1 -0.3632 0.5495 0.8684 25 1 -0.3633 0.4774 -0.9101 26 1 0.7096 1.1616 3.4844 27 1 2.7859 1.9278 -2.7091 28 1 1.4880 1.7436 -1.5012 29 1 0.6819 2.7320 -3.6749 30 1 -0.1293 1.2031 -3.2584 31 1 0.5600 1.2510 -5.6499 32 1 2.2516 1.4837 -5.1483 33 1 0.4998 -0.9021 -4.4018 34 1 1.7684 -0.9052 -5.6511 35 1 2.8837 -2.7744 -4.2692 36 1 3.2934 -2.4517 -2.5674 37 1 1.2509 -3.6727 -2.7747 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261665069.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:18 Heat of formation + Delta-G solvation = -79.539718 kcal Electronic energy + Delta-G solvation = -18887.607256 eV Core-core repulsion = 16051.218234 eV Total energy + Delta-G solvation = -2836.389021 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.84459 -36.68942 -35.85014 -33.66637 -32.25494 -31.43031 -29.95438 -26.43890 -25.09161 -24.02675 -22.80438 -21.21667 -20.26033 -17.96704 -16.97693 -16.27645 -15.99224 -15.04371 -14.56603 -14.38117 -14.18547 -13.80861 -13.47046 -13.35202 -12.92939 -12.45170 -12.19459 -12.13833 -11.33349 -11.28058 -11.02747 -10.90142 -10.73292 -10.65404 -10.57358 -10.40007 -10.18111 -10.09863 -9.87893 -9.41852 -8.88940 -8.37666 -7.87306 -7.73419 -5.98197 -4.00741 3.37797 3.40460 3.45429 3.72380 3.92341 4.49932 4.79051 5.01034 5.03343 5.11440 5.34819 5.38278 5.51846 5.65303 5.73442 5.79890 5.96434 6.03181 6.07287 6.08459 6.24215 6.33916 6.38019 6.47072 6.63389 6.78870 6.98340 7.10763 7.30049 7.56204 7.84527 8.05645 8.22158 8.27174 8.51411 9.04471 9.43879 9.63903 11.09402 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.032785 B = 0.007890 C = 0.006875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.836662 B = 3547.842951 C = 4071.591866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.031 3.969 3 H 0.044 0.956 4 C -0.497 4.497 5 H 0.068 0.932 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.899 3.101 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.532 3.468 13 O -0.531 6.531 14 N -0.620 5.620 15 C 0.108 3.892 16 C -0.135 4.135 17 C -0.117 4.117 18 C -0.127 4.127 19 C 0.147 3.853 20 H 0.069 0.931 21 C 0.080 3.920 22 O -0.553 6.553 23 H 0.033 0.967 24 H 0.089 0.911 25 H 0.011 0.989 26 H 0.261 0.739 27 H 0.056 0.944 28 H 0.099 0.901 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.018 0.982 36 H 0.084 0.916 37 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.032 0.932 -13.375 13.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.010 3.990 3 H 0.062 0.938 4 C -0.535 4.535 5 H 0.086 0.914 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.324 3.676 13 O -0.407 6.407 14 N -0.357 5.357 15 C -0.015 4.015 16 C -0.173 4.173 17 C -0.155 4.155 18 C -0.165 4.165 19 C 0.043 3.957 20 H 0.087 0.913 21 C 0.003 3.997 22 O -0.357 6.357 23 H 0.052 0.948 24 H 0.107 0.893 25 H 0.030 0.970 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.117 0.883 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.036 0.964 36 H 0.102 0.898 37 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 0.976 1.038 -13.254 13.331 hybrid contribution 0.412 -0.860 0.740 1.207 sum 1.388 0.178 -12.515 12.593 Atomic orbital electron populations 1.21641 0.96216 1.00318 1.00072 1.18878 0.94246 0.96381 0.89479 0.93840 1.21057 1.30943 1.12351 0.89187 0.91397 1.24936 0.95192 0.95083 0.99001 1.69868 1.37143 1.23079 1.23520 0.86538 0.79123 0.79806 0.81831 1.20330 1.21385 1.20232 1.21742 0.74923 0.87077 0.83850 1.90383 1.48775 1.17409 1.84162 1.48267 1.71314 1.08449 1.07656 1.21712 0.97633 0.81460 1.00736 1.21925 0.99732 1.00435 0.95227 1.21503 1.00884 0.95756 0.97323 1.21889 1.00891 0.95967 0.97762 1.21174 0.96755 0.91913 0.85821 0.91271 1.22365 0.88347 0.92168 0.96838 1.86464 1.30429 1.28210 1.90644 0.94829 0.89257 0.97035 0.92971 0.92575 0.88316 0.91330 0.91366 0.92275 0.92319 0.90596 0.92004 0.96418 0.89812 0.78585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.06 8.78 37.16 0.33 -2.74 16 2 C 0.03 0.80 1.79 -92.92 -0.17 0.63 16 3 H 0.04 1.13 6.33 -51.93 -0.33 0.80 16 4 C -0.50 -14.25 8.34 -34.44 -0.29 -14.54 16 5 H 0.07 2.04 7.00 -52.49 -0.37 1.67 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 7 N -0.90 -25.47 11.34 55.43 0.63 -24.84 16 8 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 12 C 0.53 12.47 6.29 -10.98 -0.07 12.40 16 13 O -0.53 -13.36 10.42 -18.89 -0.20 -13.55 16 14 N -0.62 -11.76 2.97 -165.21 -0.49 -12.25 16 15 C 0.11 1.74 6.14 -3.71 -0.02 1.72 16 16 C -0.13 -1.81 6.08 -26.61 -0.16 -1.98 16 17 C -0.12 -1.41 5.89 -26.69 -0.16 -1.57 16 18 C -0.13 -1.75 5.28 -26.61 -0.14 -1.89 16 19 C 0.15 2.38 3.28 -67.60 -0.22 2.16 16 20 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 21 C 0.08 1.36 5.78 37.15 0.21 1.58 16 22 O -0.55 -10.26 10.43 -59.67 -0.62 -10.89 16 23 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.09 2.35 6.13 -51.93 -0.32 2.04 16 25 H 0.01 0.24 7.80 -51.93 -0.41 -0.17 16 26 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.10 1.76 5.19 -51.93 -0.27 1.49 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.08 1.23 7.46 -51.93 -0.39 0.84 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.08 1.63 5.95 -52.11 -0.31 1.32 16 37 H 0.37 5.63 9.12 45.56 0.42 6.04 16 LS Contribution 285.55 15.07 4.30 4.30 Total: -1.00 -31.38 285.55 -7.09 -38.47 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -4.91 Total: 4.45 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -0.78 Total: -2.69 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: 0.14 Total: -37.09 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -0.82 Total: -24.44 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.38 -7.09 -38.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261665069.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.073 kcal (2) G-P(sol) polarization free energy of solvation -31.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds