Wall clock time and date at job start Thu Apr 9 2020 12:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47302 * 2 1 4 4 C 1.50702 * 109.47530 * 120.00418 * 2 1 3 5 5 H 1.08001 * 120.00305 * 119.99351 * 4 2 1 6 6 C 1.37880 * 119.99727 * 300.00208 * 4 2 1 7 7 N 1.31519 * 120.00030 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 119.99779 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47338 * 60.00015 * 8 6 4 10 10 H 1.48507 * 109.46822 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47041 * 299.99521 * 8 6 4 12 12 C 1.50705 * 109.47021 * 240.00049 * 2 1 3 13 13 O 1.21280 * 120.00203 * 263.45865 * 12 2 1 14 14 N 1.34786 * 119.99634 * 83.45862 * 12 2 1 15 15 C 1.46930 * 120.60295 * 5.33040 * 14 12 2 16 16 C 1.53196 * 108.77034 * 233.53266 * 15 14 12 17 17 C 1.53047 * 109.33911 * 305.41476 * 16 15 14 18 18 C 1.53040 * 109.53529 * 61.35046 * 17 16 15 19 19 C 1.46927 * 120.62612 * 185.31057 * 14 12 2 20 20 H 1.09001 * 109.57990 * 246.21886 * 19 14 12 21 21 C 1.52995 * 109.59043 * 6.64479 * 19 14 12 22 22 O 1.42897 * 109.47272 * 61.78684 * 21 19 14 23 23 H 1.09004 * 109.46800 * 182.32202 * 1 2 3 24 24 H 1.08992 * 109.46659 * 302.32313 * 1 2 3 25 25 H 1.09001 * 109.47118 * 62.32201 * 1 2 3 26 26 H 0.96991 * 119.99995 * 180.02562 * 7 6 4 27 27 H 1.09006 * 109.56113 * 113.76620 * 15 14 12 28 28 H 1.08996 * 109.61906 * 353.33313 * 15 14 12 29 29 H 1.08994 * 109.49468 * 185.45096 * 16 15 14 30 30 H 1.08998 * 109.49497 * 65.38433 * 16 15 14 31 31 H 1.08991 * 109.45999 * 181.36603 * 17 16 15 32 32 H 1.08999 * 109.46237 * 301.33354 * 17 16 15 33 33 H 1.08997 * 109.49909 * 58.58344 * 18 17 16 34 34 H 1.08999 * 109.49963 * 178.68271 * 18 17 16 35 35 H 1.08997 * 109.47511 * 181.79027 * 21 19 14 36 36 H 1.09005 * 109.46840 * 301.78861 * 21 19 14 37 37 H 0.96698 * 114.00451 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7105 1.2304 5 1 2.6534 -1.5886 1.1313 6 6 1.6994 -0.2395 2.4827 7 7 0.9436 0.8301 2.6035 8 14 2.3216 -1.1206 4.0078 9 1 3.8066 -1.1211 4.0080 10 1 1.8271 -0.4201 5.2204 11 1 1.8260 -2.5204 4.0075 12 6 2.0324 -0.7104 -1.2305 13 8 2.3473 -1.8800 -1.1694 14 7 2.1316 -0.0459 -2.3990 15 6 1.8656 1.3977 -2.4634 16 6 0.8174 1.6578 -3.5499 17 6 1.2930 1.0461 -4.8698 18 6 1.4522 -0.4670 -4.7045 19 6 2.5081 -0.7513 -3.6316 20 1 3.4806 -0.3965 -3.9730 21 6 2.5734 -2.2559 -3.3621 22 8 1.2840 -2.7247 -2.9628 23 1 -0.3633 -1.0269 0.0416 24 1 -0.3632 0.5495 0.8684 25 1 -0.3633 0.4774 -0.9101 26 1 0.7096 1.1616 3.4844 27 1 2.7859 1.9278 -2.7091 28 1 1.4880 1.7436 -1.5012 29 1 0.6819 2.7320 -3.6749 30 1 -0.1293 1.2031 -3.2584 31 1 0.5600 1.2510 -5.6499 32 1 2.2516 1.4837 -5.1483 33 1 0.4998 -0.9021 -4.4018 34 1 1.7684 -0.9052 -5.6511 35 1 2.8837 -2.7744 -4.2692 36 1 3.2934 -2.4517 -2.5674 37 1 1.2509 -3.6727 -2.7747 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261665069.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:18 Heat of formation + Delta-G solvation = -100.522106 kcal Electronic energy + Delta-G solvation = -18888.517120 eV Core-core repulsion = 16051.218234 eV Total energy + Delta-G solvation = -2837.298886 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.36513 -38.21215 -37.24738 -35.67840 -33.70934 -32.85601 -31.77549 -27.75491 -27.24528 -25.35395 -24.50413 -22.57840 -21.61426 -19.53801 -18.46350 -18.18440 -17.70239 -16.71934 -16.33315 -15.81936 -15.41192 -15.14065 -15.03182 -14.70744 -14.60085 -13.98652 -13.81120 -13.59899 -13.23287 -12.93027 -12.62812 -12.57043 -12.46111 -12.20720 -12.16463 -11.98769 -11.75040 -11.53947 -11.31978 -10.99478 -10.84947 -10.51589 -9.52645 -9.27415 -8.13867 -6.24007 1.40021 1.42177 1.50339 2.09256 2.27802 2.48547 3.15381 3.53379 3.87249 3.91524 4.04372 4.19636 4.34859 4.40361 4.48547 4.56409 4.68751 4.70922 4.86484 4.92545 4.95206 4.98878 5.07159 5.12326 5.16156 5.26629 5.27344 5.47796 5.55648 5.72297 5.84553 5.98751 6.23197 6.71834 6.84645 7.01054 7.41770 7.71003 8.92141 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.032785 B = 0.007890 C = 0.006875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.836662 B = 3547.842951 C = 4071.591866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.028 3.972 3 H 0.037 0.963 4 C -0.524 4.524 5 H 0.045 0.955 6 C 0.018 3.982 7 N -0.912 5.912 8 Si 0.956 3.044 9 H -0.273 1.273 10 H -0.275 1.275 11 H -0.279 1.279 12 C 0.526 3.474 13 O -0.559 6.559 14 N -0.616 5.616 15 C 0.100 3.900 16 C -0.130 4.130 17 C -0.112 4.112 18 C -0.119 4.119 19 C 0.137 3.863 20 H 0.094 0.906 21 C 0.080 3.920 22 O -0.575 6.575 23 H 0.013 0.987 24 H 0.070 0.930 25 H 0.035 0.965 26 H 0.265 0.735 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.096 0.904 30 H 0.047 0.953 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.048 0.952 34 H 0.089 0.911 35 H 0.054 0.946 36 H 0.051 0.949 37 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.451 1.759 -15.144 15.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.007 3.993 3 H 0.054 0.946 4 C -0.563 4.563 5 H 0.064 0.936 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.782 3.218 9 H -0.199 1.199 10 H -0.199 1.199 11 H -0.204 1.204 12 C 0.317 3.683 13 O -0.438 6.438 14 N -0.351 5.351 15 C -0.023 4.023 16 C -0.168 4.168 17 C -0.149 4.149 18 C -0.157 4.157 19 C 0.034 3.966 20 H 0.112 0.888 21 C 0.003 3.997 22 O -0.380 6.380 23 H 0.032 0.968 24 H 0.089 0.911 25 H 0.054 0.946 26 H 0.074 0.926 27 H 0.099 0.901 28 H 0.093 0.907 29 H 0.115 0.885 30 H 0.065 0.935 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.067 0.933 34 H 0.108 0.892 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 1.391 1.895 -15.060 15.242 hybrid contribution 0.297 -1.099 1.242 1.685 sum 1.688 0.796 -13.818 13.944 Atomic orbital electron populations 1.21410 0.95927 0.98823 1.00346 1.18793 0.94492 0.95869 0.90188 0.94564 1.21217 1.31592 1.12286 0.91167 0.93648 1.25618 0.95240 0.95762 1.01448 1.69950 1.37262 1.23644 1.24315 0.85646 0.78755 0.78595 0.78832 1.19854 1.19934 1.20443 1.21288 0.75476 0.86781 0.84780 1.90390 1.50105 1.18300 1.84965 1.48204 1.69919 1.09615 1.07363 1.21930 0.99710 0.79827 1.00816 1.21900 0.97612 1.02226 0.95037 1.21508 1.02575 0.94065 0.96766 1.21827 0.98553 0.97559 0.97769 1.21553 0.98859 0.91145 0.85041 0.88801 1.22364 0.86851 0.93354 0.97177 1.86424 1.31414 1.29303 1.90907 0.96781 0.91112 0.94633 0.92618 0.90124 0.90713 0.88549 0.93451 0.90126 0.90269 0.93319 0.89219 0.92781 0.93121 0.77500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.41 8.78 71.98 0.63 -4.78 16 2 C 0.03 1.46 1.79 -12.28 -0.02 1.44 16 3 H 0.04 1.94 6.33 -2.39 -0.02 1.93 16 4 C -0.52 -31.02 8.34 25.60 0.21 -30.81 16 5 H 0.05 2.83 7.00 -2.91 -0.02 2.81 16 6 C 0.02 1.04 5.30 84.65 0.45 1.49 16 7 N -0.91 -52.37 11.34 21.45 0.24 -52.13 16 8 Si 0.96 45.56 29.54 68.60 2.03 47.59 16 9 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 10 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 12 C 0.53 25.17 6.29 87.66 0.55 25.72 16 13 O -0.56 -29.03 10.42 20.34 0.21 -28.82 16 14 N -0.62 -22.90 2.97 -794.99 -2.36 -25.26 16 15 C 0.10 3.05 6.14 86.36 0.53 3.58 16 16 C -0.13 -3.13 6.08 30.68 0.19 -2.94 16 17 C -0.11 -2.22 5.89 30.62 0.18 -2.04 16 18 C -0.12 -2.91 5.28 30.67 0.16 -2.75 16 19 C 0.14 4.13 3.28 44.97 0.15 4.28 16 20 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 21 C 0.08 2.63 5.78 71.98 0.42 3.05 16 22 O -0.57 -21.38 10.43 -125.61 -1.31 -22.69 16 23 H 0.01 0.70 8.14 -2.39 -0.02 0.69 16 24 H 0.07 3.82 6.13 -2.39 -0.01 3.81 16 25 H 0.03 1.56 7.80 -2.39 -0.02 1.54 16 26 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 27 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 28 H 0.07 2.65 5.19 -2.39 -0.01 2.64 16 29 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.05 1.48 7.46 -2.39 -0.02 1.46 16 34 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.05 2.01 5.95 -5.32 -0.03 1.98 16 37 H 0.38 11.76 9.12 -74.06 -0.68 11.09 16 Total: -1.00 -69.24 285.55 2.63 -66.62 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: 0.37 Total: 18.46 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: 3.45 Total: -3.77 kcal Atomic # 7 Polarization: -75.28 SS G_CDS: -2.12 Total: -77.39 kcal Atomic # 8 Polarization: -50.41 SS G_CDS: -1.10 Total: -51.51 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -69.24 2.63 -66.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261665069.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.906 kcal (2) G-P(sol) polarization free energy of solvation -69.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds