Wall clock time and date at job start Thu Apr 9 2020 12:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47541 * 2 1 4 4 C 1.50702 * 109.46865 * 240.00112 * 2 1 3 5 5 H 1.08003 * 119.99537 * 239.99780 * 4 2 1 6 6 C 1.37877 * 120.00168 * 59.99949 * 4 2 1 7 7 N 1.31512 * 119.99727 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99974 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46976 * 60.00030 * 8 6 4 10 10 H 1.48502 * 109.46713 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47116 * 300.00155 * 8 6 4 12 12 C 1.50702 * 109.47290 * 120.00220 * 2 1 3 13 13 O 1.21279 * 120.00321 * 109.08046 * 12 2 1 14 14 N 1.34781 * 119.99719 * 289.07295 * 12 2 1 15 15 C 1.46924 * 120.63117 * 5.15115 * 14 12 2 16 16 C 1.53630 * 108.54405 * 126.36296 * 15 14 12 17 17 C 1.53038 * 109.23933 * 54.85792 * 16 15 14 18 18 C 1.53047 * 109.53658 * 298.51005 * 17 16 15 19 19 C 1.46929 * 120.62874 * 185.42411 * 14 12 2 20 20 H 1.09003 * 109.58140 * 113.80232 * 19 14 12 21 21 C 1.52999 * 109.58599 * 353.52370 * 19 14 12 22 22 O 1.42904 * 109.46702 * 294.61501 * 21 19 14 23 23 H 1.08993 * 109.47347 * 186.35212 * 1 2 3 24 24 H 1.09008 * 109.46518 * 306.34954 * 1 2 3 25 25 H 1.08999 * 109.46970 * 66.34545 * 1 2 3 26 26 H 0.97001 * 119.99651 * 179.97438 * 7 6 4 27 27 H 1.08996 * 109.58602 * 246.19508 * 15 14 12 28 28 H 1.09000 * 109.58495 * 6.62350 * 15 14 12 29 29 H 1.09001 * 109.63283 * 294.86650 * 16 15 14 30 30 H 1.08998 * 109.45491 * 174.73852 * 16 15 14 31 31 H 1.08999 * 109.45897 * 178.49130 * 17 16 15 32 32 H 1.08997 * 109.45324 * 58.51806 * 17 16 15 33 33 H 1.09000 * 109.49943 * 301.41304 * 18 17 16 34 34 H 1.09003 * 109.49726 * 181.31750 * 18 17 16 35 35 H 1.08994 * 109.47297 * 54.61479 * 21 19 14 36 36 H 1.09000 * 109.47082 * 174.62566 * 21 19 14 37 37 H 0.96704 * 113.99737 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2394 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 1.8279 -2.5198 -4.0082 10 1 1.8267 -0.4199 -5.2205 11 1 3.8073 -1.1190 -4.0078 12 6 2.0324 -0.7105 1.2304 13 8 2.5582 -1.7987 1.1301 14 7 1.8974 -0.1363 2.4424 15 6 1.1638 1.1275 2.5944 16 6 0.0804 0.9376 3.6670 17 6 0.7304 0.4296 4.9560 18 6 1.3927 -0.9253 4.6956 19 6 2.4862 -0.7595 3.6356 20 1 3.2801 -0.1229 4.0261 21 6 3.0608 -2.1291 3.2684 22 8 1.9984 -3.0031 2.8817 23 1 -0.3633 -1.0213 0.1137 24 1 -0.3633 0.6092 0.8278 25 1 -0.3633 0.4123 -0.9413 26 1 0.7095 1.1618 -3.4844 27 1 1.8521 1.9148 2.9018 28 1 0.6981 1.3961 1.6462 29 1 -0.6553 0.2120 3.3200 30 1 -0.4115 1.8912 3.8590 31 1 -0.0314 0.3191 5.7277 32 1 1.4835 1.1438 5.2887 33 1 0.6447 -1.6334 4.3390 34 1 1.8353 -1.2975 5.6196 35 1 3.7606 -2.0193 2.4401 36 1 3.5803 -2.5480 4.1302 37 1 2.2900 -3.8916 2.6353 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261665070.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:19 Heat of formation + Delta-G solvation = -95.217397 kcal Electronic energy + Delta-G solvation = -18891.649355 eV Core-core repulsion = 16054.580498 eV Total energy + Delta-G solvation = -2837.068856 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.39173 -38.18795 -37.26522 -35.70272 -33.76566 -32.88923 -31.64051 -27.81541 -27.22281 -25.43151 -24.26330 -22.65102 -21.65925 -19.59039 -18.40966 -18.13801 -17.63770 -16.76137 -16.34852 -15.80149 -15.50108 -15.18304 -15.05303 -14.73143 -14.60349 -13.99767 -13.83493 -13.58473 -13.07321 -12.95078 -12.67374 -12.58174 -12.35769 -12.24568 -12.12971 -11.94435 -11.69732 -11.46214 -11.26339 -11.03206 -10.73490 -10.51487 -9.65095 -9.19894 -8.13332 -6.23783 1.39873 1.41942 1.50176 2.08836 2.27993 2.48333 3.15551 3.53645 3.87672 3.92470 4.04203 4.21500 4.33953 4.39497 4.48089 4.56584 4.66884 4.69879 4.82692 4.92991 4.97393 5.02079 5.07870 5.12646 5.16310 5.25925 5.28090 5.47394 5.56335 5.72939 5.86443 6.02217 6.25361 6.72011 6.86484 7.03723 7.42521 7.70303 8.92170 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.032888 B = 0.007934 C = 0.006772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.169473 B = 3528.199791 C = 4133.508721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.029 3.971 3 H 0.032 0.968 4 C -0.524 4.524 5 H 0.048 0.952 6 C 0.017 3.983 7 N -0.912 5.912 8 Si 0.956 3.044 9 H -0.278 1.278 10 H -0.275 1.275 11 H -0.275 1.275 12 C 0.517 3.483 13 O -0.551 6.551 14 N -0.615 5.615 15 C 0.093 3.907 16 C -0.129 4.129 17 C -0.112 4.112 18 C -0.118 4.118 19 C 0.136 3.864 20 H 0.096 0.904 21 C 0.085 3.915 22 O -0.571 6.571 23 H 0.012 0.988 24 H 0.054 0.946 25 H 0.070 0.930 26 H 0.264 0.736 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.046 0.954 30 H 0.097 0.903 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.047 0.953 34 H 0.088 0.912 35 H 0.044 0.956 36 H 0.054 0.946 37 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.300 1.228 15.305 15.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.008 3.992 3 H 0.050 0.950 4 C -0.562 4.562 5 H 0.066 0.934 6 C -0.182 4.182 7 N -0.552 5.552 8 Si 0.781 3.219 9 H -0.204 1.204 10 H -0.199 1.199 11 H -0.200 1.200 12 C 0.307 3.693 13 O -0.430 6.430 14 N -0.350 5.350 15 C -0.029 4.029 16 C -0.168 4.168 17 C -0.149 4.149 18 C -0.157 4.157 19 C 0.033 3.967 20 H 0.113 0.887 21 C 0.008 3.992 22 O -0.376 6.376 23 H 0.031 0.969 24 H 0.072 0.928 25 H 0.089 0.911 26 H 0.074 0.926 27 H 0.098 0.902 28 H 0.102 0.898 29 H 0.065 0.935 30 H 0.115 0.885 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.066 0.934 34 H 0.106 0.894 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 0.144 1.304 15.242 15.299 hybrid contribution 0.601 -0.993 -1.308 1.749 sum 0.745 0.311 13.934 13.958 Atomic orbital electron populations 1.21688 0.95830 0.98296 1.02080 1.18734 0.94752 0.95572 0.90160 0.95020 1.21271 1.31377 1.12467 0.91129 0.93381 1.25615 0.95306 0.95797 1.01437 1.69943 1.37330 1.23657 1.24272 0.85652 0.78705 0.78621 0.78876 1.20404 1.19936 1.19997 1.21356 0.77533 0.85368 0.85008 1.90424 1.44651 1.21790 1.86101 1.48191 1.55611 1.24927 1.06302 1.22185 0.94633 0.85004 1.01127 1.21969 0.97140 1.02395 0.95262 1.21509 1.00487 0.96065 0.96869 1.21809 0.97755 0.98361 0.97742 1.21551 0.96260 0.92988 0.85875 0.88659 1.22284 0.90317 0.89765 0.96848 1.86440 1.35240 1.26363 1.89602 0.96860 0.92759 0.91098 0.92649 0.90197 0.89813 0.93484 0.88494 0.90203 0.90251 0.93390 0.89376 0.93818 0.92846 0.77691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.94 8.66 71.98 0.62 -5.32 16 2 C 0.03 1.52 1.79 -12.29 -0.02 1.50 16 3 H 0.03 1.72 7.60 -2.39 -0.02 1.70 16 4 C -0.52 -31.07 8.36 25.60 0.21 -30.85 16 5 H 0.05 3.01 6.81 -2.91 -0.02 2.99 16 6 C 0.02 0.98 5.29 84.66 0.45 1.43 16 7 N -0.91 -52.35 11.29 21.45 0.24 -52.11 16 8 Si 0.96 45.71 29.54 68.60 2.03 47.74 16 9 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 10 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.27 -12.92 7.11 99.48 0.71 -12.22 16 12 C 0.52 24.69 6.69 87.66 0.59 25.28 16 13 O -0.55 -28.66 9.87 20.65 0.20 -28.45 16 14 N -0.62 -22.73 2.97 -794.18 -2.35 -25.08 16 15 C 0.09 2.80 5.75 86.51 0.50 3.29 16 16 C -0.13 -3.10 6.10 30.82 0.19 -2.91 16 17 C -0.11 -2.23 5.88 30.62 0.18 -2.05 16 18 C -0.12 -2.93 5.26 30.67 0.16 -2.77 16 19 C 0.14 4.11 3.28 44.97 0.15 4.26 16 20 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 21 C 0.09 2.83 5.81 71.98 0.42 3.25 16 22 O -0.57 -21.32 10.29 -125.30 -1.29 -22.61 16 23 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 24 H 0.05 2.24 5.50 -2.38 -0.01 2.23 16 25 H 0.07 3.79 5.93 -2.39 -0.01 3.78 16 26 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 27 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.08 2.90 3.95 -2.39 -0.01 2.89 16 29 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.08 1.32 8.14 -2.39 -0.02 1.31 16 32 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.05 1.48 7.38 -2.39 -0.02 1.47 16 34 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.04 1.75 6.02 -3.80 -0.02 1.72 16 36 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.38 11.80 9.12 -74.05 -0.68 11.13 16 Total: -1.00 -69.33 282.04 2.65 -66.68 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: 0.38 Total: 18.75 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: 3.44 Total: -4.90 kcal Atomic # 7 Polarization: -75.08 SS G_CDS: -2.11 Total: -77.19 kcal Atomic # 8 Polarization: -49.98 SS G_CDS: -1.09 Total: -51.06 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -69.33 2.65 -66.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261665070.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.542 kcal (2) G-P(sol) polarization free energy of solvation -69.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds