Wall clock time and date at job start Thu Apr 9 2020 12:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 113.99913 * 2 1 4 4 H 1.08994 * 110.05957 * 28.58206 * 3 2 1 5 5 C 1.54268 * 110.03014 * 267.16620 * 3 2 1 6 6 C 1.54898 * 104.19762 * 217.10915 * 5 3 2 7 7 C 1.54896 * 102.74663 * 37.94032 * 6 5 3 8 8 C 1.53883 * 110.03027 * 150.00365 * 3 2 1 9 9 H 1.09003 * 110.06962 * 238.58814 * 8 3 2 10 10 C 1.50700 * 110.03189 * 359.97438 * 8 3 2 11 11 O 1.21281 * 119.99766 * 83.35083 * 10 8 3 12 12 N 1.34773 * 119.99644 * 263.62889 * 10 8 3 13 13 C 1.46502 * 119.99648 * 179.72579 * 12 10 8 14 14 H 1.08999 * 109.47263 * 35.00027 * 13 12 10 15 15 C 1.53001 * 109.47335 * 274.99597 * 13 12 10 16 16 C 1.50710 * 109.47020 * 154.99502 * 13 12 10 17 17 H 1.07996 * 119.99909 * 0.02562 * 16 13 12 18 18 C 1.37872 * 119.99882 * 179.97438 * 16 13 12 19 19 N 1.31523 * 119.99883 * 0.02562 * 18 16 13 20 20 Si 1.86797 * 119.99921 * 180.02562 * 18 16 13 21 21 H 1.48494 * 109.47321 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47141 * 120.00163 * 20 18 16 23 23 H 1.48498 * 109.47306 * 239.99791 * 20 18 16 24 24 H 1.09000 * 109.47497 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46967 * 300.00135 * 1 2 3 26 26 H 1.08999 * 109.47014 * 59.99699 * 1 2 3 27 27 H 1.08994 * 110.48629 * 98.43122 * 5 3 2 28 28 H 1.09001 * 110.59895 * 335.84168 * 5 3 2 29 29 H 1.08999 * 110.75179 * 279.63097 * 6 5 3 30 30 H 1.08992 * 110.91545 * 156.33369 * 6 5 3 31 31 H 1.08999 * 110.48284 * 203.38054 * 7 6 5 32 32 H 1.09000 * 110.47867 * 80.73887 * 7 6 5 33 33 H 0.96996 * 120.00672 * 359.72215 * 12 10 8 34 34 H 1.08993 * 109.46877 * 300.00277 * 15 13 12 35 35 H 1.09000 * 109.46903 * 60.00282 * 15 13 12 36 36 H 1.08995 * 109.47382 * 180.02562 * 15 13 12 37 37 H 0.97003 * 119.99294 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3409 2.0126 0.4898 5 6 2.2906 1.7590 -1.4476 6 6 3.6254 2.5388 -1.3496 7 6 4.4267 1.7154 -0.3108 8 6 3.3684 1.2777 0.7228 9 1 3.3588 1.9710 1.5639 10 6 3.6664 -0.1175 1.2083 11 8 4.1573 -0.9302 0.4536 12 7 3.3823 -0.4637 2.4794 13 6 3.6664 -1.8218 2.9496 14 1 4.5751 -2.1889 2.4724 15 6 2.4961 -2.7404 2.5928 16 6 3.8554 -1.8065 4.4447 17 1 3.7717 -0.8781 4.9901 18 6 4.1340 -2.9779 5.1164 19 7 4.2354 -4.1086 4.4522 20 14 4.3674 -2.9591 6.9696 21 1 4.2043 -1.5723 7.4750 22 1 3.3552 -3.8404 7.6050 23 1 5.7291 -3.4495 7.3020 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.4932 2.4109 -1.8043 28 1 2.3999 0.8967 -2.1053 29 1 3.4545 3.5533 -0.9896 30 1 4.1392 2.5529 -2.3107 31 1 5.1882 2.3356 0.1621 32 1 4.8816 0.8447 -0.7831 33 1 2.9897 0.1862 3.0830 34 1 1.5875 -2.3733 3.0701 35 1 2.3595 -2.7515 1.5115 36 1 2.7073 -3.7507 2.9430 37 1 4.4318 -4.9326 4.9248 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262605614.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:22 Heat of formation + Delta-G solvation = -98.436113 kcal Electronic energy + Delta-G solvation = -18235.524309 eV Core-core repulsion = 15398.315879 eV Total energy + Delta-G solvation = -2837.208430 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.71793 -37.62158 -35.67330 -34.49059 -32.23804 -29.76721 -28.18117 -27.99185 -25.91968 -25.14955 -22.14456 -20.76919 -20.03321 -19.02100 -17.43964 -16.48836 -15.78900 -15.31623 -14.98977 -14.91011 -14.36321 -13.85862 -13.67856 -13.28216 -12.98787 -12.36089 -12.23818 -11.69783 -11.43648 -11.32918 -11.21970 -11.02531 -10.98168 -10.87260 -10.61951 -10.56787 -10.49330 -10.19842 -10.13871 -9.40633 -8.92289 -8.75116 -8.45714 -7.69912 -6.04843 -4.13567 3.27205 3.34685 3.37580 3.58576 3.90654 4.26373 4.47430 4.59245 4.73693 5.05260 5.21979 5.26955 5.41504 5.43055 5.50476 5.57957 5.67145 5.70019 5.77042 5.85314 5.91095 6.06521 6.10597 6.24372 6.51428 6.97442 7.16445 7.30721 7.39657 7.63443 7.71975 7.82037 8.05167 8.26738 8.84225 8.91873 9.35465 9.55613 11.01073 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.036399 B = 0.006101 C = 0.005731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.070001 B = 4587.994585 C = 4884.719468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.364 6.364 3 C 0.099 3.901 4 H 0.065 0.935 5 C -0.144 4.144 6 C -0.120 4.120 7 C -0.111 4.111 8 C -0.117 4.117 9 H 0.090 0.910 10 C 0.526 3.474 11 O -0.550 6.550 12 N -0.709 5.709 13 C 0.266 3.734 14 H 0.046 0.954 15 C -0.142 4.142 16 C -0.531 4.531 17 H 0.060 0.940 18 C 0.065 3.935 19 N -0.884 5.884 20 Si 0.900 3.100 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.283 1.283 24 H 0.084 0.916 25 H 0.039 0.961 26 H 0.035 0.965 27 H 0.064 0.936 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.384 0.616 34 H 0.022 0.978 35 H 0.017 0.983 36 H 0.085 0.915 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.835 13.059 -7.916 16.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.282 6.282 3 C 0.040 3.960 4 H 0.083 0.917 5 C -0.182 4.182 6 C -0.158 4.158 7 C -0.149 4.149 8 C -0.139 4.139 9 H 0.108 0.892 10 C 0.311 3.689 11 O -0.429 6.429 12 N -0.356 5.356 13 C 0.164 3.836 14 H 0.064 0.936 15 C -0.201 4.201 16 C -0.569 4.569 17 H 0.078 0.922 18 C -0.138 4.138 19 N -0.522 5.522 20 Si 0.728 3.272 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.209 1.209 24 H 0.103 0.897 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.082 0.918 28 H 0.099 0.901 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.107 0.893 33 H 0.216 0.784 34 H 0.042 0.958 35 H 0.037 0.963 36 H 0.104 0.896 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.332 12.063 -8.397 15.635 hybrid contribution -0.425 0.507 1.413 1.560 sum -5.757 12.571 -6.984 15.490 Atomic orbital electron populations 1.22751 0.81720 1.02770 0.99191 1.88172 1.18946 1.26377 1.94722 1.22654 0.93122 0.85187 0.95048 0.91665 1.22879 0.97569 1.00487 0.97264 1.22400 0.95635 0.98268 0.99456 1.22339 0.96531 1.00605 0.95458 1.22129 0.95568 0.97083 0.99158 0.89211 1.19783 0.78199 0.88361 0.82580 1.90597 1.45187 1.52188 1.54885 1.46440 1.62340 1.16057 1.10787 1.18669 0.94854 0.76544 0.93518 0.93648 1.22010 0.97761 1.03411 0.96903 1.21298 1.49573 0.94343 0.91698 0.92200 1.24895 0.94977 0.95313 0.98630 1.69936 1.48057 0.98709 1.35460 0.86419 0.77779 0.78037 0.84990 1.19813 1.20937 1.20926 0.89732 0.94260 0.94596 0.91761 0.90132 0.91612 0.91205 0.91359 0.89291 0.78436 0.95845 0.96349 0.89595 0.92751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.85 101.05 1.10 1.51 16 2 O -0.36 -6.19 8.81 -36.13 -0.32 -6.51 16 3 C 0.10 1.37 3.36 -25.61 -0.09 1.29 16 4 H 0.07 0.75 7.81 -51.93 -0.41 0.34 16 5 C -0.14 -1.72 6.56 -25.07 -0.16 -1.88 16 6 C -0.12 -1.30 6.91 -24.73 -0.17 -1.47 16 7 C -0.11 -1.55 6.32 -25.07 -0.16 -1.71 16 8 C -0.12 -1.82 3.29 -90.65 -0.30 -2.11 16 9 H 0.09 1.17 8.12 -51.93 -0.42 0.74 16 10 C 0.53 11.17 5.51 -10.99 -0.06 11.11 16 11 O -0.55 -13.99 15.46 4.65 0.07 -13.92 16 12 N -0.71 -15.70 5.07 -54.93 -0.28 -15.98 16 13 C 0.27 7.10 2.56 -69.08 -0.18 6.92 16 14 H 0.05 1.40 7.58 -51.93 -0.39 1.00 16 15 C -0.14 -3.73 9.26 37.16 0.34 -3.39 16 16 C -0.53 -14.53 8.73 -34.44 -0.30 -14.83 16 17 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 18 C 0.06 1.79 5.30 -17.82 -0.09 1.69 16 19 N -0.88 -25.63 11.32 55.43 0.63 -25.00 16 20 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 21 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.04 0.45 8.10 -51.93 -0.42 0.03 16 26 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.08 1.10 8.08 -51.93 -0.42 0.68 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.09 1.49 6.94 -51.93 -0.36 1.12 16 33 H 0.38 7.44 8.53 -40.82 -0.35 7.09 16 34 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 37 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 302.56 15.07 4.56 4.56 Total: -1.00 -32.51 302.56 -6.44 -38.95 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -6.01 Total: 4.72 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -0.07 Total: -2.87 kcal Atomic # 7 Polarization: -41.33 SS G_CDS: 0.35 Total: -40.98 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.25 Total: -20.43 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.51 -6.44 -38.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262605614.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.487 kcal (2) G-P(sol) polarization free energy of solvation -32.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds