Wall clock time and date at job start Thu Apr 9 2020 12:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 113.99913 * 2 1 4 4 H 1.08994 * 110.05957 * 28.58206 * 3 2 1 5 5 C 1.54268 * 110.03014 * 267.16620 * 3 2 1 6 6 C 1.54898 * 104.19762 * 217.10915 * 5 3 2 7 7 C 1.54896 * 102.74663 * 37.94032 * 6 5 3 8 8 C 1.53883 * 110.03027 * 150.00365 * 3 2 1 9 9 H 1.09003 * 110.06962 * 238.58814 * 8 3 2 10 10 C 1.50700 * 110.03189 * 359.97438 * 8 3 2 11 11 O 1.21281 * 119.99766 * 83.35083 * 10 8 3 12 12 N 1.34773 * 119.99644 * 263.62889 * 10 8 3 13 13 C 1.46502 * 119.99648 * 179.72579 * 12 10 8 14 14 H 1.08999 * 109.47263 * 35.00027 * 13 12 10 15 15 C 1.53001 * 109.47335 * 274.99597 * 13 12 10 16 16 C 1.50710 * 109.47020 * 154.99502 * 13 12 10 17 17 H 1.07996 * 119.99909 * 0.02562 * 16 13 12 18 18 C 1.37872 * 119.99882 * 179.97438 * 16 13 12 19 19 N 1.31523 * 119.99883 * 0.02562 * 18 16 13 20 20 Si 1.86797 * 119.99921 * 180.02562 * 18 16 13 21 21 H 1.48494 * 109.47321 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47141 * 120.00163 * 20 18 16 23 23 H 1.48498 * 109.47306 * 239.99791 * 20 18 16 24 24 H 1.09000 * 109.47497 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46967 * 300.00135 * 1 2 3 26 26 H 1.08999 * 109.47014 * 59.99699 * 1 2 3 27 27 H 1.08994 * 110.48629 * 98.43122 * 5 3 2 28 28 H 1.09001 * 110.59895 * 335.84168 * 5 3 2 29 29 H 1.08999 * 110.75179 * 279.63097 * 6 5 3 30 30 H 1.08992 * 110.91545 * 156.33369 * 6 5 3 31 31 H 1.08999 * 110.48284 * 203.38054 * 7 6 5 32 32 H 1.09000 * 110.47867 * 80.73887 * 7 6 5 33 33 H 0.96996 * 120.00672 * 359.72215 * 12 10 8 34 34 H 1.08993 * 109.46877 * 300.00277 * 15 13 12 35 35 H 1.09000 * 109.46903 * 60.00282 * 15 13 12 36 36 H 1.08995 * 109.47382 * 180.02562 * 15 13 12 37 37 H 0.97003 * 119.99294 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3409 2.0126 0.4898 5 6 2.2906 1.7590 -1.4476 6 6 3.6254 2.5388 -1.3496 7 6 4.4267 1.7154 -0.3108 8 6 3.3684 1.2777 0.7228 9 1 3.3588 1.9710 1.5639 10 6 3.6664 -0.1175 1.2083 11 8 4.1573 -0.9302 0.4536 12 7 3.3823 -0.4637 2.4794 13 6 3.6664 -1.8218 2.9496 14 1 4.5751 -2.1889 2.4724 15 6 2.4961 -2.7404 2.5928 16 6 3.8554 -1.8065 4.4447 17 1 3.7717 -0.8781 4.9901 18 6 4.1340 -2.9779 5.1164 19 7 4.2354 -4.1086 4.4522 20 14 4.3674 -2.9591 6.9696 21 1 4.2043 -1.5723 7.4750 22 1 3.3552 -3.8404 7.6050 23 1 5.7291 -3.4495 7.3020 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.4932 2.4109 -1.8043 28 1 2.3999 0.8967 -2.1053 29 1 3.4545 3.5533 -0.9896 30 1 4.1392 2.5529 -2.3107 31 1 5.1882 2.3356 0.1621 32 1 4.8816 0.8447 -0.7831 33 1 2.9897 0.1862 3.0830 34 1 1.5875 -2.3733 3.0701 35 1 2.3595 -2.7515 1.5115 36 1 2.7073 -3.7507 2.9430 37 1 4.4318 -4.9326 4.9248 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262605614.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:21 Heat of formation + Delta-G solvation = -121.548196 kcal Electronic energy + Delta-G solvation = -18236.526524 eV Core-core repulsion = 15398.315879 eV Total energy + Delta-G solvation = -2838.210646 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.11595 -39.08438 -36.95781 -36.33475 -34.25901 -31.42641 -29.58050 -29.14234 -27.33393 -26.95168 -23.82114 -21.85136 -21.63791 -20.65488 -18.98380 -17.99821 -17.35697 -16.92085 -16.63234 -16.07868 -15.72373 -15.28905 -15.14657 -14.65372 -14.54550 -14.26532 -13.68957 -13.38884 -13.00608 -12.88439 -12.76358 -12.44093 -12.34232 -12.26759 -12.22309 -12.10673 -11.93674 -11.70501 -11.45731 -11.07408 -10.64807 -10.46886 -10.44600 -9.64011 -8.16583 -6.34635 1.44199 1.44665 1.57461 1.97611 2.37087 2.68399 2.97156 3.13354 3.57731 3.67720 3.99194 4.26809 4.37187 4.43264 4.44728 4.52878 4.58878 4.64224 4.76902 4.79451 4.87575 4.97913 5.02264 5.07651 5.14078 5.19371 5.23545 5.46311 5.48637 5.65263 5.73733 5.95655 6.13003 6.39153 6.74854 7.09744 7.34089 7.71116 8.90210 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.036399 B = 0.006101 C = 0.005731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.070001 B = 4587.994585 C = 4884.719468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.410 6.410 3 C 0.093 3.907 4 H 0.100 0.900 5 C -0.142 4.142 6 C -0.108 4.108 7 C -0.116 4.116 8 C -0.114 4.114 9 H 0.123 0.877 10 C 0.521 3.479 11 O -0.602 6.602 12 N -0.706 5.706 13 C 0.273 3.727 14 H -0.009 1.009 15 C -0.124 4.124 16 C -0.545 4.545 17 H 0.073 0.927 18 C 0.011 3.989 19 N -0.920 5.920 20 Si 0.976 3.024 21 H -0.258 1.258 22 H -0.278 1.278 23 H -0.283 1.283 24 H 0.073 0.927 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.096 0.904 28 H 0.053 0.947 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.049 0.951 33 H 0.400 0.600 34 H 0.036 0.964 35 H 0.006 0.994 36 H 0.062 0.938 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.955 16.086 -6.948 18.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.329 6.329 3 C 0.035 3.965 4 H 0.118 0.882 5 C -0.179 4.179 6 C -0.145 4.145 7 C -0.154 4.154 8 C -0.135 4.135 9 H 0.141 0.859 10 C 0.309 3.691 11 O -0.484 6.484 12 N -0.354 5.354 13 C 0.169 3.831 14 H 0.009 0.991 15 C -0.183 4.183 16 C -0.583 4.583 17 H 0.091 0.909 18 C -0.189 4.189 19 N -0.559 5.559 20 Si 0.800 3.200 21 H -0.182 1.182 22 H -0.204 1.204 23 H -0.209 1.209 24 H 0.092 0.908 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.114 0.886 28 H 0.071 0.929 29 H 0.116 0.884 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.068 0.932 33 H 0.235 0.765 34 H 0.055 0.945 35 H 0.025 0.975 36 H 0.081 0.919 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.475 15.140 -7.430 18.065 hybrid contribution -0.061 -0.468 1.052 1.153 sum -6.535 14.672 -6.379 17.282 Atomic orbital electron populations 1.22888 0.79984 1.02819 1.01092 1.88123 1.21149 1.28571 1.95073 1.22943 0.92406 0.84847 0.96340 0.88196 1.22876 0.99313 1.00175 0.95580 1.22400 0.94217 0.98962 0.98927 1.22371 0.97000 0.99951 0.96041 1.22296 0.97376 0.93127 1.00743 0.85922 1.20842 0.76378 0.90469 0.81436 1.90571 1.47206 1.54537 1.56052 1.46232 1.62714 1.14707 1.11791 1.18258 0.92587 0.78895 0.93360 0.99095 1.21791 0.98243 1.02249 0.95993 1.21598 1.49754 0.95071 0.91874 0.90855 1.25869 0.94353 0.94781 1.03864 1.70092 1.48665 0.99486 1.37640 0.85242 0.77509 0.78725 0.78507 1.18219 1.20363 1.20923 0.90800 0.92767 0.92123 0.88551 0.92855 0.88357 0.90318 0.89533 0.93244 0.76519 0.94464 0.97476 0.91889 0.92600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 10.85 113.37 1.23 1.91 16 2 O -0.41 -13.66 8.81 -148.12 -1.31 -14.97 16 3 C 0.09 2.34 3.36 31.32 0.11 2.45 16 4 H 0.10 1.83 7.81 -2.39 -0.02 1.81 16 5 C -0.14 -2.99 6.56 31.67 0.21 -2.79 16 6 C -0.11 -1.98 6.91 31.89 0.22 -1.76 16 7 C -0.12 -3.05 6.32 31.67 0.20 -2.85 16 8 C -0.11 -3.32 3.29 -10.81 -0.04 -3.36 16 9 H 0.12 2.73 8.12 -2.39 -0.02 2.72 16 10 C 0.52 22.49 5.51 87.66 0.48 22.97 16 11 O -0.60 -32.32 15.46 -2.17 -0.03 -32.35 16 12 N -0.71 -31.51 5.07 -446.08 -2.26 -33.77 16 13 C 0.27 15.05 2.56 44.25 0.11 15.16 16 14 H -0.01 -0.58 7.58 -2.39 -0.02 -0.60 16 15 C -0.12 -6.75 9.26 71.98 0.67 -6.08 16 16 C -0.54 -29.95 8.73 25.60 0.22 -29.73 16 17 H 0.07 3.75 7.74 -2.91 -0.02 3.72 16 18 C 0.01 0.60 5.30 84.65 0.45 1.05 16 19 N -0.92 -54.69 11.32 21.45 0.24 -54.45 16 20 Si 0.98 42.91 29.54 68.60 2.03 44.93 16 21 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 22 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 23 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 24 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.05 1.12 8.10 -2.39 -0.02 1.10 16 26 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.05 1.42 8.08 -2.39 -0.02 1.40 16 29 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.05 1.70 6.94 -2.39 -0.02 1.68 16 33 H 0.40 15.03 8.53 -92.71 -0.79 14.24 16 34 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.01 0.34 8.14 -2.39 -0.02 0.33 16 36 H 0.06 3.71 6.07 -2.39 -0.01 3.69 16 37 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -74.52 302.56 2.79 -71.73 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: 0.26 Total: 21.89 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: 3.86 Total: -3.02 kcal Atomic # 7 Polarization: -86.20 SS G_CDS: -2.02 Total: -88.22 kcal Atomic # 8 Polarization: -45.98 SS G_CDS: -1.34 Total: -47.32 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.93 kcal Total: -74.52 2.79 -71.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262605614.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.816 kcal (2) G-P(sol) polarization free energy of solvation -74.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds