Wall clock time and date at job start Thu Apr 9 2020 12:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42893 * 113.99903 * 2 1 4 4 H 1.09003 * 110.01669 * 29.93969 * 3 2 1 5 5 C 1.54265 * 110.03407 * 268.54522 * 3 2 1 6 6 C 1.54892 * 104.31482 * 217.04064 * 5 3 2 7 7 C 1.55235 * 102.58634 * 37.92776 * 6 5 3 8 8 C 1.53869 * 110.03453 * 151.37683 * 3 2 1 9 9 H 1.09003 * 110.03691 * 238.57021 * 8 3 2 10 10 C 1.50705 * 110.03237 * 0.02562 * 8 3 2 11 11 O 1.21283 * 119.99808 * 85.81031 * 10 8 3 12 12 N 1.34777 * 120.00168 * 265.81545 * 10 8 3 13 13 C 1.46500 * 120.00220 * 179.97438 * 12 10 8 14 14 H 1.09002 * 109.47419 * 325.00441 * 13 12 10 15 15 C 1.52999 * 109.46971 * 85.00040 * 13 12 10 16 16 C 1.50696 * 109.47413 * 205.00045 * 13 12 10 17 17 H 1.08004 * 120.00096 * 0.02562 * 16 13 12 18 18 C 1.37877 * 120.00032 * 180.02562 * 16 13 12 19 19 N 1.31513 * 120.00216 * 359.97438 * 18 16 13 20 20 Si 1.86807 * 119.99838 * 180.02562 * 18 16 13 21 21 H 1.48493 * 109.47257 * 89.99484 * 20 18 16 22 22 H 1.48499 * 109.46814 * 209.99672 * 20 18 16 23 23 H 1.48498 * 109.46971 * 329.99532 * 20 18 16 24 24 H 1.09007 * 109.47072 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47274 * 299.99665 * 1 2 3 26 26 H 1.08995 * 109.46912 * 60.00185 * 1 2 3 27 27 H 1.08994 * 110.48583 * 335.78579 * 5 3 2 28 28 H 1.09003 * 110.48937 * 98.29263 * 5 3 2 29 29 H 1.08995 * 110.75954 * 156.32141 * 6 5 3 30 30 H 1.09004 * 110.75333 * 279.69623 * 6 5 3 31 31 H 1.09004 * 110.47076 * 203.39657 * 7 6 5 32 32 H 1.08999 * 110.46963 * 80.77572 * 7 6 5 33 33 H 0.97002 * 119.99909 * 359.97438 * 12 10 8 34 34 H 1.09008 * 109.47254 * 300.00474 * 15 13 12 35 35 H 1.09001 * 109.47245 * 60.00036 * 15 13 12 36 36 H 1.08996 * 109.47697 * 180.02562 * 15 13 12 37 37 H 0.96994 * 120.00431 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3512 2.0072 0.5112 5 6 2.2588 1.7732 -1.4488 6 6 3.5944 2.5542 -1.3753 7 6 4.4193 1.7188 -0.3597 8 6 3.3838 1.2709 0.6925 9 1 3.3922 1.9564 1.5400 10 6 3.6929 -0.1292 1.1566 11 8 4.2086 -0.9204 0.3956 12 7 3.3962 -0.5022 2.4173 13 6 3.6962 -1.8634 2.8684 14 1 3.5506 -2.5601 2.0428 15 6 5.1482 -1.9342 3.3454 16 6 2.7759 -2.2306 4.0038 17 1 2.0408 -1.5212 4.3542 18 6 2.8725 -3.4723 4.5954 19 7 3.7673 -4.3364 4.1685 20 14 1.7312 -3.9277 6.0025 21 1 0.5013 -4.5573 5.4583 22 1 2.4182 -4.8841 6.9072 23 1 1.3670 -2.7038 6.7604 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 2.3543 0.9161 -2.1154 28 1 1.4526 2.4267 -1.7824 29 1 4.0835 2.5757 -2.3491 30 1 3.4307 3.5650 -1.0016 31 1 5.1910 2.3344 0.1026 32 1 4.8637 0.8529 -0.8503 33 1 2.9841 0.1307 3.0260 34 1 5.8139 -1.6685 2.5241 35 1 5.2938 -1.2375 4.1709 36 1 5.3716 -2.9470 3.6806 37 1 3.8349 -5.2100 4.5844 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262605615.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:23 Heat of formation + Delta-G solvation = -98.408721 kcal Electronic energy + Delta-G solvation = -18216.608081 eV Core-core repulsion = 15379.400838 eV Total energy + Delta-G solvation = -2837.207243 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.70300 -37.61837 -35.63663 -34.49492 -32.23508 -29.77281 -28.16840 -27.98464 -25.87976 -25.16434 -22.14446 -20.75506 -20.04735 -19.01574 -17.43366 -16.41695 -15.78577 -15.32718 -15.02961 -14.87644 -14.32792 -13.95157 -13.54432 -13.30914 -12.96340 -12.34667 -12.24276 -11.76455 -11.37884 -11.31845 -11.21043 -11.01179 -10.96246 -10.88437 -10.66952 -10.59386 -10.44038 -10.22220 -10.14995 -9.37676 -8.94820 -8.75547 -8.44916 -7.70416 -6.04235 -4.12513 3.28369 3.34566 3.36540 3.58650 3.93579 4.26654 4.48017 4.59967 4.73971 5.06490 5.23429 5.27780 5.44647 5.47646 5.50661 5.58730 5.68607 5.70589 5.77796 5.88126 5.93939 6.06665 6.11059 6.24916 6.51798 6.92992 7.07247 7.26886 7.42700 7.62896 7.70979 7.81531 8.04615 8.25845 8.84642 8.91969 9.35428 9.56123 11.01906 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.032554 B = 0.006570 C = 0.005833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.911269 B = 4260.761132 C = 4799.143437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.364 6.364 3 C 0.098 3.902 4 H 0.065 0.935 5 C -0.145 4.145 6 C -0.120 4.120 7 C -0.112 4.112 8 C -0.117 4.117 9 H 0.090 0.910 10 C 0.527 3.473 11 O -0.551 6.551 12 N -0.708 5.708 13 C 0.266 3.734 14 H 0.048 0.952 15 C -0.146 4.146 16 C -0.528 4.528 17 H 0.059 0.941 18 C 0.065 3.935 19 N -0.885 5.885 20 Si 0.900 3.100 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.274 1.274 24 H 0.085 0.915 25 H 0.039 0.961 26 H 0.035 0.965 27 H 0.080 0.920 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.384 0.616 34 H 0.013 0.987 35 H 0.024 0.976 36 H 0.089 0.911 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.005 13.766 -7.019 15.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.283 6.283 3 C 0.039 3.961 4 H 0.083 0.917 5 C -0.183 4.183 6 C -0.158 4.158 7 C -0.149 4.149 8 C -0.139 4.139 9 H 0.108 0.892 10 C 0.311 3.689 11 O -0.430 6.430 12 N -0.355 5.355 13 C 0.164 3.836 14 H 0.065 0.935 15 C -0.205 4.205 16 C -0.567 4.567 17 H 0.077 0.923 18 C -0.138 4.138 19 N -0.523 5.523 20 Si 0.728 3.272 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.199 1.199 24 H 0.104 0.896 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.098 0.902 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.216 0.784 34 H 0.033 0.967 35 H 0.044 0.956 36 H 0.107 0.893 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.453 12.791 -7.497 15.223 hybrid contribution -1.123 0.265 1.185 1.654 sum -4.576 13.056 -6.312 15.207 Atomic orbital electron populations 1.22749 0.81592 1.02882 0.99133 1.88170 1.19080 1.26284 1.94718 1.22649 0.93054 0.85266 0.95099 0.91679 1.22894 0.97615 1.00442 0.97363 1.22459 0.95547 0.98206 0.99542 1.22400 0.96554 1.00483 0.95503 1.22118 0.95508 0.96999 0.99269 0.89191 1.19782 0.78366 0.88286 0.82443 1.90596 1.44619 1.53564 1.54195 1.46423 1.61103 1.16368 1.11619 1.18659 0.92335 0.77665 0.94908 0.93461 1.22078 0.97633 1.03214 0.97587 1.21233 1.18132 1.00215 1.17097 0.92279 1.24887 0.95581 0.96134 0.97192 1.69908 1.33853 1.06882 1.41614 0.86478 0.80647 0.78299 0.81817 1.20641 1.21129 1.19943 0.89626 0.94212 0.94663 0.90155 0.91759 0.91191 0.91596 0.91432 0.89230 0.78442 0.96742 0.95646 0.89293 0.92699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.85 101.05 1.10 1.54 16 2 O -0.36 -6.40 8.81 -35.24 -0.31 -6.71 16 3 C 0.10 1.39 3.35 -25.62 -0.09 1.30 16 4 H 0.07 0.77 7.82 -51.93 -0.41 0.36 16 5 C -0.15 -1.76 6.54 -25.07 -0.16 -1.92 16 6 C -0.12 -1.30 6.93 -24.55 -0.17 -1.47 16 7 C -0.11 -1.54 6.32 -24.89 -0.16 -1.70 16 8 C -0.12 -1.81 3.29 -90.66 -0.30 -2.11 16 9 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 10 C 0.53 11.20 5.53 -10.98 -0.06 11.14 16 11 O -0.55 -14.04 15.40 5.55 0.09 -13.95 16 12 N -0.71 -15.69 5.07 -54.93 -0.28 -15.97 16 13 C 0.27 7.11 2.56 -69.08 -0.18 6.93 16 14 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 15 C -0.15 -3.80 9.26 37.16 0.34 -3.46 16 16 C -0.53 -14.49 8.73 -34.44 -0.30 -14.79 16 17 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 18 C 0.06 1.79 5.30 -17.82 -0.09 1.70 16 19 N -0.88 -25.65 11.32 55.43 0.63 -25.02 16 20 Si 0.90 21.10 29.54 -169.99 -5.02 16.07 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 24 H 0.09 1.16 8.14 -51.92 -0.42 0.74 16 25 H 0.04 0.48 8.10 -51.93 -0.42 0.06 16 26 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.08 1.11 8.08 -51.93 -0.42 0.69 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.09 1.49 6.89 -51.93 -0.36 1.14 16 33 H 0.38 7.44 8.54 -40.82 -0.35 7.10 16 34 H 0.01 0.35 8.14 -51.92 -0.42 -0.07 16 35 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 37 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 302.53 15.07 4.56 4.56 Total: -1.00 -32.51 302.53 -6.41 -38.93 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -6.01 Total: 4.93 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -0.07 Total: -2.84 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: 0.35 Total: -40.99 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.23 Total: -20.66 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.51 -6.41 -38.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262605615.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.483 kcal (2) G-P(sol) polarization free energy of solvation -32.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds