Wall clock time and date at job start Thu Apr 9 2020 12:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42912 * 113.99459 * 2 1 4 4 H 1.08998 * 110.54010 * 31.15831 * 3 2 1 5 5 C 1.54269 * 110.48639 * 268.54800 * 3 2 1 6 6 C 1.53875 * 106.59594 * 217.71263 * 5 3 2 7 7 C 1.54270 * 106.60048 * 0.02562 * 6 5 3 8 8 C 1.54886 * 110.48197 * 153.77234 * 3 2 1 9 9 H 1.08999 * 110.75828 * 38.30895 * 8 3 2 10 10 C 1.50704 * 110.91632 * 275.00687 * 8 3 2 11 11 O 1.21282 * 119.99672 * 5.12961 * 10 8 3 12 12 N 1.34771 * 120.00441 * 185.12966 * 10 8 3 13 13 C 1.46498 * 120.00433 * 180.02562 * 12 10 8 14 14 H 1.09004 * 109.46920 * 34.99804 * 13 12 10 15 15 C 1.52996 * 109.46865 * 275.00293 * 13 12 10 16 16 C 1.50695 * 109.47214 * 154.99750 * 13 12 10 17 17 H 1.07996 * 119.99962 * 5.46738 * 16 13 12 18 18 C 1.37878 * 119.99743 * 185.45871 * 16 13 12 19 19 N 1.31514 * 120.00160 * 9.56374 * 18 16 13 20 20 Si 1.86808 * 119.99671 * 189.56276 * 18 16 13 21 21 H 1.48496 * 109.47166 * 84.99675 * 20 18 16 22 22 H 1.48505 * 109.46794 * 204.99459 * 20 18 16 23 23 H 1.48494 * 109.47064 * 324.99599 * 20 18 16 24 24 H 1.08995 * 109.47476 * 299.99951 * 1 2 3 25 25 H 1.08998 * 109.47448 * 59.99929 * 1 2 3 26 26 H 1.09008 * 109.46671 * 179.97438 * 1 2 3 27 27 H 1.08992 * 110.03276 * 98.42393 * 5 3 2 28 28 H 1.09003 * 110.03005 * 336.99200 * 5 3 2 29 29 H 1.09004 * 110.02852 * 119.28363 * 6 5 3 30 30 H 1.08995 * 110.03110 * 240.71157 * 6 5 3 31 31 H 1.08992 * 110.49028 * 142.28837 * 7 6 5 32 32 H 1.09006 * 110.48261 * 264.93468 * 7 6 5 33 33 H 0.97007 * 119.99710 * 0.02562 * 12 10 8 34 34 H 1.09001 * 109.47371 * 303.67094 * 15 13 12 35 35 H 1.09004 * 109.47913 * 63.67482 * 15 13 12 36 36 H 1.09002 * 109.47400 * 183.67811 * 15 13 12 37 37 H 0.96996 * 119.99495 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 1 1.3677 2.0102 0.5281 5 6 2.2631 1.7840 -1.4447 6 6 3.5940 2.5561 -1.4252 7 6 4.1036 2.5195 0.0304 8 6 3.4196 1.2715 0.6412 9 1 3.9509 0.3628 0.3581 10 6 3.3314 1.3908 2.1409 11 8 2.2479 1.4017 2.6857 12 7 4.4566 1.4854 2.8768 13 6 4.3709 1.6009 4.3347 14 1 3.5279 1.0123 4.6968 15 6 4.1710 3.0682 4.7192 16 6 5.6449 1.0880 4.9550 17 1 6.4725 0.7962 4.3256 18 6 5.7539 0.9915 6.3261 19 7 4.6931 1.1649 7.0839 20 14 7.4084 0.6145 7.1072 21 1 8.1742 1.8753 7.2776 22 1 7.1967 -0.0192 8.4335 23 1 8.1694 -0.3124 6.2315 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0278 -0.0005 27 1 1.4552 2.4405 -1.7675 28 1 2.3385 0.9269 -2.1139 29 1 4.3151 2.0738 -2.0851 30 1 3.4319 3.5874 -1.7387 31 1 5.1878 2.4100 0.0525 32 1 3.7992 3.4200 0.5639 33 1 5.3232 1.4771 2.4410 34 1 4.9803 3.6668 4.3013 35 1 3.2177 3.4205 4.3252 36 1 4.1726 3.1628 5.8051 37 1 4.7700 1.0973 8.0484 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262605616.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:24 Heat of formation + Delta-G solvation = -104.437042 kcal Electronic energy + Delta-G solvation = -17916.999565 eV Core-core repulsion = 15079.530914 eV Total energy + Delta-G solvation = -2837.468650 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.69483 -37.76806 -35.74688 -34.67604 -32.30401 -29.89300 -28.28540 -28.02886 -25.93031 -25.19095 -22.29914 -20.61188 -20.16105 -19.17629 -17.44284 -16.77222 -15.76560 -15.37843 -14.91226 -14.75344 -14.46764 -14.12163 -13.75478 -13.37296 -12.90547 -12.36807 -12.23414 -12.14704 -11.69791 -11.43128 -11.29718 -11.20207 -11.00473 -10.93362 -10.75830 -10.56579 -10.38974 -10.33102 -10.24271 -9.38773 -9.08790 -8.85272 -8.47340 -7.86313 -6.11885 -4.17129 3.26804 3.33304 3.34948 3.46338 3.87645 4.17466 4.39867 4.52315 4.76122 4.92952 5.21786 5.34159 5.39725 5.45023 5.47607 5.51685 5.61439 5.71368 5.77750 5.84464 5.86038 5.99795 6.08174 6.17967 6.29876 6.78082 6.91367 7.11096 7.39340 7.47889 7.60213 7.70913 7.89178 8.10362 8.74014 8.83566 9.20588 9.49218 10.96726 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.035915 B = 0.005569 C = 0.005230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.438461 B = 5027.068672 C = 5352.274923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.378 6.378 3 C 0.104 3.896 4 H 0.078 0.922 5 C -0.148 4.148 6 C -0.119 4.119 7 C -0.113 4.113 8 C -0.114 4.114 9 H 0.106 0.894 10 C 0.511 3.489 11 O -0.554 6.554 12 N -0.708 5.708 13 C 0.262 3.738 14 H 0.054 0.946 15 C -0.140 4.140 16 C -0.535 4.535 17 H 0.061 0.939 18 C 0.068 3.932 19 N -0.882 5.882 20 Si 0.898 3.102 21 H -0.278 1.278 22 H -0.286 1.286 23 H -0.274 1.274 24 H 0.046 0.954 25 H 0.034 0.966 26 H 0.081 0.919 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.388 0.612 34 H 0.028 0.972 35 H 0.018 0.982 36 H 0.072 0.928 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.608 2.253 -15.689 16.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.296 6.296 3 C 0.046 3.954 4 H 0.096 0.904 5 C -0.186 4.186 6 C -0.156 4.156 7 C -0.151 4.151 8 C -0.136 4.136 9 H 0.124 0.876 10 C 0.296 3.704 11 O -0.433 6.433 12 N -0.355 5.355 13 C 0.160 3.840 14 H 0.072 0.928 15 C -0.199 4.199 16 C -0.574 4.574 17 H 0.079 0.921 18 C -0.136 4.136 19 N -0.519 5.519 20 Si 0.725 3.275 21 H -0.204 1.204 22 H -0.212 1.212 23 H -0.199 1.199 24 H 0.065 0.935 25 H 0.053 0.947 26 H 0.099 0.901 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.220 0.780 34 H 0.047 0.953 35 H 0.037 0.963 36 H 0.090 0.910 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.334 2.092 -15.057 15.563 hybrid contribution 1.112 -0.002 0.319 1.157 sum -2.223 2.090 -14.739 15.051 Atomic orbital electron populations 1.22712 0.81362 1.02311 0.99820 1.87877 1.19539 1.27376 1.94805 1.22756 0.93635 0.85190 0.93833 0.90406 1.22677 0.97818 1.00372 0.97776 1.22032 0.96561 1.00292 0.96744 1.22278 1.00417 0.97014 0.95395 1.22368 0.97048 1.00682 0.93454 0.87629 1.20168 0.85071 0.76977 0.88231 1.90634 1.28061 1.51272 1.73338 1.46474 1.07101 1.71883 1.10057 1.18732 0.98487 0.93282 0.73508 0.92769 1.22004 0.97010 0.98305 1.02568 1.21178 0.99346 1.45004 0.91846 0.92098 1.24895 0.96737 0.94832 0.97100 1.69989 1.28034 1.48689 1.05150 0.86522 0.83841 0.78469 0.78631 1.20442 1.21183 1.19899 0.93515 0.94704 0.90069 0.91709 0.90740 0.91407 0.91561 0.90371 0.90811 0.78013 0.95291 0.96263 0.90964 0.92588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.87 101.05 1.10 1.54 16 2 O -0.38 -6.08 10.41 -35.23 -0.37 -6.45 16 3 C 0.10 1.55 2.36 -25.07 -0.06 1.49 16 4 H 0.08 1.26 7.26 -51.93 -0.38 0.89 16 5 C -0.15 -1.66 6.56 -25.61 -0.17 -1.83 16 6 C -0.12 -1.19 6.80 -25.61 -0.17 -1.36 16 7 C -0.11 -1.37 6.21 -25.08 -0.16 -1.53 16 8 C -0.11 -1.76 2.99 -89.79 -0.27 -2.03 16 9 H 0.11 1.57 8.14 -51.93 -0.42 1.14 16 10 C 0.51 10.55 7.12 -10.99 -0.08 10.47 16 11 O -0.55 -13.68 15.47 5.56 0.09 -13.60 16 12 N -0.71 -15.06 5.01 -54.94 -0.28 -15.34 16 13 C 0.26 6.78 2.42 -69.09 -0.17 6.62 16 14 H 0.05 1.65 7.52 -51.93 -0.39 1.26 16 15 C -0.14 -3.47 9.36 37.16 0.35 -3.12 16 16 C -0.54 -14.41 8.66 -34.44 -0.30 -14.71 16 17 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 18 C 0.07 1.86 5.17 -17.82 -0.09 1.77 16 19 N -0.88 -25.44 12.16 55.43 0.67 -24.76 16 20 Si 0.90 20.83 29.55 -169.99 -5.02 15.81 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 24 H 0.05 0.65 8.11 -51.93 -0.42 0.22 16 25 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.08 0.91 8.14 -51.92 -0.42 0.48 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.81 8.07 -51.93 -0.42 0.39 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.96 8.04 -51.93 -0.42 0.54 16 33 H 0.39 7.12 8.52 -40.82 -0.35 6.77 16 34 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 1.93 6.83 -51.93 -0.35 1.57 16 37 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 LS Contribution 306.13 15.07 4.61 4.61 Total: -1.00 -31.61 306.13 -6.38 -37.99 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -6.07 Total: 4.43 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -0.02 Total: -2.69 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: 0.40 Total: -40.10 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.28 Total: -20.05 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.61 -6.38 -37.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262605616.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.445 kcal (2) G-P(sol) polarization free energy of solvation -31.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds