Wall clock time and date at job start Thu Apr 9 2020 12:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.52731 * 2 1 4 4 C 1.53198 * 109.49757 * 239.92407 * 2 1 3 5 5 N 1.46926 * 108.77416 * 185.41236 * 4 2 1 6 6 C 1.34780 * 120.62827 * 233.58395 * 5 4 2 7 7 O 1.21277 * 120.00034 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.99862 * 180.02562 * 6 5 4 9 9 C 1.52995 * 109.47310 * 179.97438 * 8 6 5 10 10 C 1.50699 * 109.47310 * 179.97438 * 9 8 6 11 11 H 1.07994 * 119.99875 * 0.02562 * 10 9 8 12 12 C 1.37885 * 119.99682 * 179.97438 * 10 9 8 13 13 N 1.31506 * 120.00118 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99478 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47378 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.46941 * 120.00256 * 14 12 10 17 17 H 1.48507 * 109.47024 * 240.00115 * 14 12 10 18 18 C 1.46920 * 118.73951 * 53.61367 * 5 4 2 19 19 C 1.53196 * 108.77435 * 306.38547 * 18 5 4 20 20 C 1.53037 * 109.31040 * 54.63686 * 19 18 5 21 21 H 1.09003 * 109.45936 * 178.62016 * 20 19 18 22 22 O 1.42897 * 109.46364 * 58.65373 * 20 19 18 23 23 H 1.08994 * 109.47341 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46765 * 300.07916 * 1 2 3 25 25 H 1.09001 * 109.47064 * 60.07301 * 1 2 3 26 26 H 1.08998 * 109.58454 * 65.62770 * 4 2 1 27 27 H 1.08996 * 109.70366 * 305.27150 * 4 2 1 28 28 H 1.08996 * 109.47093 * 300.00420 * 8 6 5 29 29 H 1.09003 * 109.47280 * 60.00303 * 8 6 5 30 30 H 1.09003 * 109.47159 * 300.00594 * 9 8 6 31 31 H 1.08998 * 109.47141 * 59.99809 * 9 8 6 32 32 H 0.97007 * 120.00304 * 179.97438 * 13 12 10 33 33 H 1.08998 * 109.58534 * 186.60110 * 18 5 4 34 34 H 1.08999 * 109.58994 * 66.17463 * 18 5 4 35 35 H 1.08999 * 109.50112 * 174.59220 * 19 18 5 36 36 H 1.09004 * 109.49641 * 294.68461 * 19 18 5 37 37 H 0.96706 * 113.99216 * 60.00181 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7237 -1.2497 5 7 3.5046 -0.8290 -1.1697 6 6 4.2811 -0.3862 -2.1784 7 8 3.7731 0.1052 -3.1640 8 6 5.7805 -0.5017 -2.0817 9 6 6.4189 0.0696 -3.3492 10 6 7.9184 -0.0453 -3.2522 11 1 8.3707 -0.4826 -2.3744 12 6 8.7127 0.4068 -4.2846 13 7 8.1618 0.9388 -5.3537 14 14 10.5714 0.2636 -4.1646 15 1 10.9368 -0.3669 -2.8707 16 1 11.0765 -0.5730 -5.2826 17 1 11.1783 1.6166 -4.2453 18 6 4.1053 -1.4267 0.0305 19 6 3.5709 -0.6951 1.2659 20 6 2.0409 -0.7232 1.2482 21 1 1.6582 -0.2246 2.1388 22 8 1.5897 -2.0790 1.2309 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5151 0.8893 25 1 -0.3633 0.5127 -0.8906 26 1 1.7638 -0.1577 -2.1389 27 1 1.6054 -1.7214 -1.3008 28 1 6.1326 0.0559 -1.2139 29 1 6.0581 -1.5506 -1.9766 30 1 6.0667 -0.4885 -4.2168 31 1 6.1414 1.1184 -3.4548 32 1 8.7206 1.2573 -6.0799 33 1 5.1896 -1.3246 -0.0140 34 1 3.8375 -2.4819 0.0864 35 1 3.9335 -1.1898 2.1669 36 1 3.9160 0.3387 1.2540 37 1 1.8759 -2.5984 1.9948 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324754853.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:29 Heat of formation + Delta-G solvation = -105.560383 kcal Electronic energy + Delta-G solvation = -17803.465500 eV Core-core repulsion = 14965.948138 eV Total energy + Delta-G solvation = -2837.517362 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.09391 -38.13178 -35.24678 -33.65899 -33.22395 -31.15678 -30.89094 -27.08661 -25.81313 -24.55640 -22.48451 -21.52925 -20.03687 -18.49297 -17.14057 -16.95175 -15.88689 -15.45712 -15.21571 -15.07763 -14.44471 -14.33669 -13.86477 -13.52501 -13.05371 -12.76788 -12.31199 -12.20023 -12.04996 -11.91441 -11.50765 -11.36226 -11.08617 -11.03295 -10.92872 -10.56841 -10.41661 -10.09895 -9.93872 -9.57419 -9.13193 -8.93669 -8.34547 -8.26917 -5.94433 -3.98747 3.26485 3.33401 3.35586 3.40861 3.44056 4.06068 4.47494 4.50867 4.61754 4.81872 4.90117 5.18952 5.28172 5.35681 5.40528 5.41144 5.51867 5.62687 5.70328 5.71711 5.84962 5.96258 6.01860 6.10865 6.23432 6.24605 6.30228 6.80356 6.95456 7.44517 7.76689 7.83744 7.89006 8.09489 8.40728 8.80529 9.10085 9.64679 11.16612 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.046782 B = 0.004829 C = 0.004512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.374136 B = 5796.983056 C = 6204.204826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.099 4.099 3 H 0.083 0.917 4 C 0.121 3.879 5 N -0.624 5.624 6 C 0.511 3.489 7 O -0.536 6.536 8 C -0.128 4.128 9 C 0.036 3.964 10 C -0.526 4.526 11 H 0.056 0.944 12 C 0.058 3.942 13 N -0.890 5.890 14 Si 0.892 3.108 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 C 0.115 3.885 19 C -0.170 4.170 20 C 0.111 3.889 21 H 0.054 0.946 22 O -0.560 6.560 23 H 0.064 0.936 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.088 0.912 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.023 0.977 31 H 0.023 0.977 32 H 0.260 0.740 33 H 0.090 0.910 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.464 -4.748 16.587 21.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.118 4.118 3 H 0.101 0.899 4 C -0.002 4.002 5 N -0.360 5.360 6 C 0.302 3.698 7 O -0.411 6.411 8 C -0.168 4.168 9 C -0.001 4.001 10 C -0.564 4.564 11 H 0.074 0.926 12 C -0.144 4.144 13 N -0.528 5.528 14 Si 0.720 3.280 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.009 4.009 19 C -0.209 4.209 20 C 0.052 3.948 21 H 0.072 0.928 22 O -0.365 6.365 23 H 0.083 0.917 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.106 0.894 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.042 0.958 31 H 0.041 0.959 32 H 0.070 0.930 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -12.949 -4.199 15.284 20.467 hybrid contribution 1.341 -0.193 0.712 1.530 sum -11.609 -4.391 15.996 20.246 Atomic orbital electron populations 1.21690 0.94057 1.02551 1.01563 1.21540 0.96575 0.99293 0.94439 0.89852 1.21440 0.80344 1.00704 0.97715 1.48266 1.06221 1.62605 1.18872 1.21576 0.90706 0.76047 0.81488 1.90649 1.75786 1.43780 1.30888 1.21869 0.88395 1.02554 1.03951 1.18914 0.94067 0.96902 0.90258 1.21257 0.91523 1.40388 1.03240 0.92594 1.25026 0.98657 0.95302 0.95395 1.70010 1.35099 1.40683 1.07036 0.86543 0.85787 0.77698 0.77973 1.19762 1.21017 1.21029 1.21548 0.98779 0.96906 0.83638 1.22655 0.96755 1.02657 0.98818 1.21764 0.92397 0.83068 0.97565 0.92808 1.86536 1.77850 1.22804 1.49334 0.91700 0.92790 0.92445 0.89378 0.91381 0.90404 0.90355 0.95819 0.95857 0.93017 0.89159 0.91332 0.90578 0.90401 0.77927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.07 37.16 0.34 -1.02 16 2 C -0.10 -1.11 2.70 -90.50 -0.24 -1.36 16 3 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 4 C 0.12 1.73 5.47 -3.71 -0.02 1.71 16 5 N -0.62 -9.84 2.97 -172.77 -0.51 -10.36 16 6 C 0.51 10.48 7.70 -10.98 -0.08 10.40 16 7 O -0.54 -13.21 15.39 5.56 0.09 -13.13 16 8 C -0.13 -2.69 3.99 -27.89 -0.11 -2.80 16 9 C 0.04 0.99 4.26 -27.89 -0.12 0.87 16 10 C -0.53 -15.08 9.11 -34.44 -0.31 -15.39 16 11 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 12 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 13 N -0.89 -27.71 13.29 55.43 0.74 -26.98 16 14 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 15 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 16 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 18 C 0.11 1.37 6.10 -3.71 -0.02 1.35 16 19 C -0.17 -1.57 5.80 -26.61 -0.15 -1.73 16 20 C 0.11 1.02 3.19 -26.69 -0.09 0.94 16 21 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 22 O -0.56 -5.02 11.43 -35.23 -0.40 -5.43 16 23 H 0.06 0.65 7.72 -51.93 -0.40 0.25 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.09 1.44 7.00 -51.93 -0.36 1.07 16 27 H 0.07 0.96 7.82 -51.93 -0.41 0.55 16 28 H 0.08 1.49 7.69 -51.93 -0.40 1.09 16 29 H 0.08 1.52 7.94 -51.93 -0.41 1.10 16 30 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 31 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 32 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 33 H 0.09 1.08 5.93 -51.93 -0.31 0.77 16 34 H 0.07 0.76 7.81 -51.93 -0.41 0.35 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.37 1.84 9.08 45.56 0.41 2.25 16 LS Contribution 298.89 15.07 4.50 4.50 Total: -1.00 -34.78 298.89 -6.73 -41.51 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -5.20 Total: -1.44 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -0.92 Total: -5.44 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.22 Total: -37.33 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -0.32 Total: -18.56 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -34.78 -6.73 -41.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324754853.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.050 kcal (2) G-P(sol) polarization free energy of solvation -34.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds