Wall clock time and date at job start Thu Apr 9 2020 12:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.52731 * 2 1 4 4 C 1.53198 * 109.49757 * 239.92407 * 2 1 3 5 5 N 1.46926 * 108.77416 * 185.41236 * 4 2 1 6 6 C 1.34780 * 120.62827 * 233.58395 * 5 4 2 7 7 O 1.21277 * 120.00034 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.99862 * 180.02562 * 6 5 4 9 9 C 1.52995 * 109.47310 * 179.97438 * 8 6 5 10 10 C 1.50699 * 109.47310 * 179.97438 * 9 8 6 11 11 H 1.07994 * 119.99875 * 0.02562 * 10 9 8 12 12 C 1.37885 * 119.99682 * 179.97438 * 10 9 8 13 13 N 1.31506 * 120.00118 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99478 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47378 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.46941 * 120.00256 * 14 12 10 17 17 H 1.48507 * 109.47024 * 240.00115 * 14 12 10 18 18 C 1.46920 * 118.73951 * 53.61367 * 5 4 2 19 19 C 1.53196 * 108.77435 * 306.38547 * 18 5 4 20 20 C 1.53037 * 109.31040 * 54.63686 * 19 18 5 21 21 H 1.09003 * 109.45936 * 178.62016 * 20 19 18 22 22 O 1.42897 * 109.46364 * 58.65373 * 20 19 18 23 23 H 1.08994 * 109.47341 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46765 * 300.07916 * 1 2 3 25 25 H 1.09001 * 109.47064 * 60.07301 * 1 2 3 26 26 H 1.08998 * 109.58454 * 65.62770 * 4 2 1 27 27 H 1.08996 * 109.70366 * 305.27150 * 4 2 1 28 28 H 1.08996 * 109.47093 * 300.00420 * 8 6 5 29 29 H 1.09003 * 109.47280 * 60.00303 * 8 6 5 30 30 H 1.09003 * 109.47159 * 300.00594 * 9 8 6 31 31 H 1.08998 * 109.47141 * 59.99809 * 9 8 6 32 32 H 0.97007 * 120.00304 * 179.97438 * 13 12 10 33 33 H 1.08998 * 109.58534 * 186.60110 * 18 5 4 34 34 H 1.08999 * 109.58994 * 66.17463 * 18 5 4 35 35 H 1.08999 * 109.50112 * 174.59220 * 19 18 5 36 36 H 1.09004 * 109.49641 * 294.68461 * 19 18 5 37 37 H 0.96706 * 113.99216 * 60.00181 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7237 -1.2497 5 7 3.5046 -0.8290 -1.1697 6 6 4.2811 -0.3862 -2.1784 7 8 3.7731 0.1052 -3.1640 8 6 5.7805 -0.5017 -2.0817 9 6 6.4189 0.0696 -3.3492 10 6 7.9184 -0.0453 -3.2522 11 1 8.3707 -0.4826 -2.3744 12 6 8.7127 0.4068 -4.2846 13 7 8.1618 0.9388 -5.3537 14 14 10.5714 0.2636 -4.1646 15 1 10.9368 -0.3669 -2.8707 16 1 11.0765 -0.5730 -5.2826 17 1 11.1783 1.6166 -4.2453 18 6 4.1053 -1.4267 0.0305 19 6 3.5709 -0.6951 1.2659 20 6 2.0409 -0.7232 1.2482 21 1 1.6582 -0.2246 2.1388 22 8 1.5897 -2.0790 1.2309 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5151 0.8893 25 1 -0.3633 0.5127 -0.8906 26 1 1.7638 -0.1577 -2.1389 27 1 1.6054 -1.7214 -1.3008 28 1 6.1326 0.0559 -1.2139 29 1 6.0581 -1.5506 -1.9766 30 1 6.0667 -0.4885 -4.2168 31 1 6.1414 1.1184 -3.4548 32 1 8.7206 1.2573 -6.0799 33 1 5.1896 -1.3246 -0.0140 34 1 3.8375 -2.4819 0.0864 35 1 3.9335 -1.1898 2.1669 36 1 3.9160 0.3387 1.2540 37 1 1.8759 -2.5984 1.9948 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324754853.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:29 Heat of formation + Delta-G solvation = -131.462852 kcal Electronic energy + Delta-G solvation = -17804.588715 eV Core-core repulsion = 14965.948138 eV Total energy + Delta-G solvation = -2838.640577 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.33739 -39.35232 -36.30862 -35.62825 -34.42303 -32.86705 -32.09324 -28.56209 -27.12775 -26.00332 -23.42153 -23.37893 -21.06805 -19.87659 -18.83849 -17.87464 -17.64117 -16.82873 -16.58294 -16.41709 -15.98506 -15.38853 -14.97926 -14.69153 -14.47574 -14.21059 -13.84161 -13.59731 -13.31853 -13.00204 -12.87820 -12.83517 -12.46657 -12.35435 -12.22620 -11.98219 -11.92461 -11.60306 -11.29034 -11.27511 -10.84002 -10.62447 -10.58443 -9.58208 -8.18309 -6.32853 1.42296 1.44139 1.57421 1.66123 2.05532 2.43335 3.14781 3.39235 3.64456 3.77440 3.91024 4.00467 4.10771 4.33084 4.38805 4.46922 4.49082 4.58096 4.64276 4.72949 4.82521 4.83534 4.96081 5.04336 5.13386 5.17436 5.21324 5.43052 5.47749 5.60203 5.64136 5.83968 6.16411 6.42179 6.85569 7.02513 7.24906 7.37692 8.94873 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.046782 B = 0.004829 C = 0.004512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.374136 B = 5796.983056 C = 6204.204826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.099 4.099 3 H 0.075 0.925 4 C 0.119 3.881 5 N -0.612 5.612 6 C 0.506 3.494 7 O -0.594 6.594 8 C -0.113 4.113 9 C 0.042 3.958 10 C -0.541 4.541 11 H 0.077 0.923 12 C -0.008 4.008 13 N -0.939 5.939 14 Si 0.976 3.024 15 H -0.251 1.251 16 H -0.281 1.281 17 H -0.280 1.280 18 C 0.103 3.897 19 C -0.164 4.164 20 C 0.117 3.883 21 H 0.079 0.921 22 O -0.573 6.573 23 H 0.062 0.938 24 H 0.073 0.927 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.103 0.897 29 H 0.101 0.899 30 H -0.020 1.020 31 H -0.019 1.019 32 H 0.263 0.737 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.113 0.887 36 H 0.070 0.930 37 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.596 -5.975 20.025 23.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.118 4.118 3 H 0.093 0.907 4 C -0.003 4.003 5 N -0.345 5.345 6 C 0.297 3.703 7 O -0.474 6.474 8 C -0.153 4.153 9 C 0.004 3.996 10 C -0.579 4.579 11 H 0.096 0.904 12 C -0.205 4.205 13 N -0.579 5.579 14 Si 0.800 3.200 15 H -0.174 1.174 16 H -0.207 1.207 17 H -0.206 1.206 18 C -0.019 4.019 19 C -0.202 4.202 20 C 0.058 3.942 21 H 0.097 0.903 22 O -0.382 6.382 23 H 0.081 0.919 24 H 0.092 0.908 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.091 0.909 28 H 0.121 0.879 29 H 0.119 0.881 30 H -0.002 1.002 31 H -0.001 1.001 32 H 0.072 0.928 33 H 0.111 0.889 34 H 0.103 0.897 35 H 0.131 0.869 36 H 0.089 0.911 37 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -12.098 -5.469 18.813 23.027 hybrid contribution 0.983 0.144 -0.338 1.049 sum -11.116 -5.326 18.475 22.210 Atomic orbital electron populations 1.21647 0.92823 1.02601 1.02225 1.21537 0.97600 0.98739 0.93955 0.90702 1.21529 0.79384 1.00922 0.98489 1.48273 1.06707 1.60756 1.18758 1.21468 0.90882 0.76131 0.81847 1.90627 1.76537 1.46826 1.33456 1.21619 0.88701 1.03689 1.01278 1.18703 0.94775 0.94079 0.92003 1.21726 0.91978 1.40209 1.04014 0.90448 1.26166 1.04960 0.94582 0.94770 1.70193 1.37591 1.41924 1.08204 0.85241 0.78046 0.77871 0.78872 1.17418 1.20661 1.20587 1.21934 0.98992 0.97969 0.82963 1.22653 0.96737 1.02238 0.98568 1.21673 0.92216 0.83420 0.96877 0.90337 1.86500 1.78047 1.22735 1.50896 0.91878 0.90835 0.93132 0.92456 0.90941 0.87854 0.88061 1.00188 1.00078 0.92848 0.88889 0.89738 0.86909 0.91110 0.75602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.07 71.98 0.65 -1.75 16 2 C -0.10 -2.08 2.70 -10.71 -0.03 -2.11 16 3 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 4 C 0.12 3.43 5.47 86.36 0.47 3.90 16 5 N -0.61 -19.03 2.97 -818.91 -2.43 -21.46 16 6 C 0.51 21.38 7.70 87.66 0.67 22.05 16 7 O -0.59 -31.35 15.39 -3.02 -0.05 -31.39 16 8 C -0.11 -4.78 3.99 29.85 0.12 -4.66 16 9 C 0.04 2.42 4.26 29.85 0.13 2.55 16 10 C -0.54 -31.26 9.11 25.60 0.23 -31.03 16 11 H 0.08 4.04 7.74 -2.91 -0.02 4.02 16 12 C -0.01 -0.44 5.46 84.66 0.46 0.02 16 13 N -0.94 -60.49 13.29 21.45 0.28 -60.20 16 14 Si 0.98 44.55 29.54 68.60 2.03 46.58 16 15 H -0.25 -10.47 7.11 99.48 0.71 -9.76 16 16 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 17 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 18 C 0.10 2.17 6.10 86.37 0.53 2.70 16 19 C -0.16 -2.40 5.80 30.67 0.18 -2.22 16 20 C 0.12 1.74 3.19 30.62 0.10 1.84 16 21 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 22 O -0.57 -8.14 11.43 -148.98 -1.70 -9.84 16 23 H 0.06 1.15 7.72 -2.39 -0.02 1.14 16 24 H 0.07 1.03 8.14 -2.39 -0.02 1.02 16 25 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.06 1.99 7.00 -2.39 -0.02 1.98 16 27 H 0.07 2.02 7.82 -2.39 -0.02 2.00 16 28 H 0.10 3.81 7.69 -2.39 -0.02 3.79 16 29 H 0.10 3.79 7.94 -2.39 -0.02 3.77 16 30 H -0.02 -1.33 8.10 -2.39 -0.02 -1.35 16 31 H -0.02 -1.25 8.10 -2.39 -0.02 -1.27 16 32 H 0.26 15.77 8.31 -92.70 -0.77 15.00 16 33 H 0.09 1.93 5.93 -2.39 -0.01 1.91 16 34 H 0.08 1.57 7.81 -2.39 -0.02 1.56 16 35 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.39 2.09 9.08 -74.05 -0.67 1.42 16 Total: -1.00 -80.02 298.89 2.02 -78.00 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: 0.38 Total: 7.03 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: 3.52 Total: -8.72 kcal Atomic # 7 Polarization: -79.51 SS G_CDS: -2.15 Total: -81.66 kcal Atomic # 8 Polarization: -39.48 SS G_CDS: -1.75 Total: -41.23 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -80.02 2.02 -78.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324754853.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.459 kcal (2) G-P(sol) polarization free energy of solvation -80.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds