Wall clock time and date at job start Thu Apr 9 2020 12:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47254 * 2 1 4 4 O 1.42900 * 109.47464 * 239.99964 * 2 1 3 5 5 C 1.53000 * 109.47032 * 119.99836 * 2 1 3 6 6 H 1.08994 * 110.91346 * 62.45245 * 5 2 1 7 7 C 1.55160 * 111.00180 * 298.54473 * 5 2 1 8 8 C 1.54330 * 102.94186 * 206.42194 * 7 5 2 9 9 N 1.47029 * 107.26628 * 22.19822 * 8 7 5 10 10 C 1.34777 * 125.64343 * 181.01789 * 9 8 7 11 11 O 1.21278 * 119.99854 * 180.02562 * 10 9 8 12 12 C 1.50703 * 120.00161 * 0.02775 * 10 9 8 13 13 C 1.53000 * 109.46912 * 179.97438 * 12 10 9 14 14 C 1.50703 * 109.46912 * 179.97438 * 13 12 10 15 15 H 1.07996 * 119.99751 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00001 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00094 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99955 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47116 * 59.99536 * 18 16 14 20 20 H 1.48500 * 109.46585 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.46730 * 299.99515 * 18 16 14 22 22 C 1.47423 * 108.70620 * 1.28516 * 9 8 7 23 23 H 1.09000 * 109.47331 * 300.00407 * 1 2 3 24 24 H 1.09002 * 109.46897 * 60.00407 * 1 2 3 25 25 H 1.08996 * 109.46932 * 179.97438 * 1 2 3 26 26 H 0.96702 * 113.99493 * 300.00072 * 4 2 1 27 27 H 1.08997 * 110.71548 * 88.06456 * 7 5 2 28 28 H 1.08989 * 110.72638 * 324.78747 * 7 5 2 29 29 H 1.08999 * 109.88633 * 262.78400 * 8 7 5 30 30 H 1.08999 * 109.87926 * 141.60801 * 8 7 5 31 31 H 1.09001 * 109.46980 * 59.99654 * 12 10 9 32 32 H 1.08992 * 109.47158 * 299.99760 * 12 10 9 33 33 H 1.09002 * 109.47398 * 300.00078 * 13 12 10 34 34 H 1.09001 * 109.47194 * 60.00258 * 13 12 10 35 35 H 0.97000 * 120.00333 * 179.97438 * 17 16 14 36 36 H 1.09001 * 110.36901 * 94.48270 * 22 9 8 37 37 H 1.08997 * 110.36390 * 216.80669 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.0400 -0.7212 1.2493 6 1 1.7257 -1.7649 1.2515 7 6 1.5728 0.0033 2.5393 8 6 2.6596 -0.3819 3.5650 9 7 3.8609 -0.7607 2.8065 10 6 5.0260 -1.1800 3.3387 11 8 5.9552 -1.4668 2.6140 12 6 5.1741 -1.2926 4.8342 13 6 6.5821 -1.7873 5.1714 14 6 6.7304 -1.8993 6.6669 15 1 5.9031 -1.6437 7.3122 16 6 7.9224 -2.3282 7.2112 17 7 8.9297 -2.6401 6.4253 18 14 8.1060 -2.4677 9.0650 19 1 7.1046 -3.4301 9.5905 20 1 9.4726 -2.9478 9.3922 21 1 7.8866 -1.1366 9.6856 22 6 3.5820 -0.5996 1.3679 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.7211 -1.5952 -1.2328 27 1 0.5965 -0.3639 2.8557 28 1 1.5498 1.0825 2.3888 29 1 2.3198 -1.2252 4.1663 30 1 2.8807 0.4697 4.2084 31 1 4.4390 -1.9990 5.2199 32 1 5.0131 -0.3157 5.2898 33 1 6.7427 -2.7645 4.7157 34 1 7.3174 -1.0812 4.7856 35 1 9.7684 -2.9415 6.8083 36 1 3.9152 0.3797 1.0242 37 1 4.0695 -1.3893 0.7963 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326010575.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:33 Heat of formation + Delta-G solvation = -132.815985 kcal Electronic energy + Delta-G solvation = -17317.079752 eV Core-core repulsion = 14478.380499 eV Total energy + Delta-G solvation = -2838.699253 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.17555 -39.37291 -37.41309 -35.60234 -33.62780 -32.83067 -30.56919 -29.91182 -27.68211 -24.95491 -23.64302 -22.96562 -21.52335 -20.03738 -18.84650 -17.88859 -17.68518 -16.88553 -16.68516 -16.42839 -15.92287 -15.50890 -14.79443 -14.53930 -14.40282 -14.18175 -13.81289 -13.79014 -13.26856 -13.16605 -12.78367 -12.76856 -12.63896 -12.51213 -12.16283 -11.98092 -11.77182 -11.65751 -11.48292 -11.34370 -10.95884 -10.70533 -10.57421 -9.66808 -8.18890 -6.33990 1.41571 1.46816 1.54611 1.63243 2.01250 2.42971 3.13690 3.24989 3.56632 3.71816 3.76596 3.99952 4.25550 4.27801 4.37628 4.41684 4.45496 4.49499 4.53931 4.68176 4.85507 4.90573 4.97449 4.98512 5.04608 5.18487 5.29485 5.39054 5.43006 5.48837 5.58532 5.82364 6.14951 6.48071 6.83961 6.86945 7.20358 7.36509 8.93880 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.058457 B = 0.004109 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.865772 B = 6812.463714 C = 7203.982813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.115 3.885 3 H 0.095 0.905 4 O -0.585 6.585 5 C -0.120 4.120 6 H 0.094 0.906 7 C -0.111 4.111 8 C 0.088 3.912 9 N -0.625 5.625 10 C 0.519 3.481 11 O -0.595 6.595 12 C -0.109 4.109 13 C 0.042 3.958 14 C -0.545 4.545 15 H 0.077 0.923 16 C -0.008 4.008 17 N -0.939 5.939 18 Si 0.978 3.022 19 H -0.261 1.261 20 H -0.288 1.288 21 H -0.261 1.261 22 C 0.107 3.893 23 H 0.084 0.916 24 H 0.062 0.938 25 H 0.067 0.933 26 H 0.388 0.612 27 H 0.115 0.885 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.102 0.898 32 H 0.102 0.898 33 H -0.019 1.019 34 H -0.020 1.020 35 H 0.263 0.737 36 H 0.060 0.940 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.314 6.366 -8.366 25.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.056 3.944 3 H 0.113 0.887 4 O -0.392 6.392 5 C -0.139 4.139 6 H 0.113 0.887 7 C -0.148 4.148 8 C -0.034 4.034 9 N -0.359 5.359 10 C 0.310 3.690 11 O -0.476 6.476 12 C -0.149 4.149 13 C 0.004 3.996 14 C -0.582 4.582 15 H 0.096 0.904 16 C -0.205 4.205 17 N -0.579 5.579 18 Si 0.801 3.199 19 H -0.185 1.185 20 H -0.213 1.213 21 H -0.186 1.186 22 C -0.015 4.015 23 H 0.103 0.897 24 H 0.081 0.919 25 H 0.086 0.914 26 H 0.237 0.763 27 H 0.134 0.866 28 H 0.111 0.889 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.120 0.880 32 H 0.120 0.880 33 H -0.001 1.001 34 H -0.002 1.002 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -22.328 6.713 -8.817 24.927 hybrid contribution 0.811 -0.837 0.647 1.333 sum -21.518 5.876 -8.171 23.755 Atomic orbital electron populations 1.22436 0.93935 1.03492 1.03571 1.21902 0.94394 0.95896 0.82184 0.88661 1.86585 1.77966 1.30404 1.44289 1.23130 0.91985 1.01851 0.96955 0.88738 1.22709 0.98452 1.01866 0.91820 1.22406 0.83992 1.01283 0.95708 1.48705 1.12820 1.65880 1.08497 1.21171 0.80710 0.75192 0.91944 1.90647 1.40989 1.51870 1.64048 1.21579 1.00305 1.03868 0.89130 1.18699 0.91188 0.94144 0.95522 1.21664 0.99210 1.44966 0.92401 0.90447 1.26191 0.95438 0.94690 1.04220 1.70184 1.04114 1.45908 1.37675 0.85320 0.77259 0.79276 0.78061 1.18531 1.21322 1.18561 1.22300 0.97189 1.00687 0.81336 0.89718 0.91938 0.91353 0.76267 0.86635 0.88873 0.90109 0.90215 0.87959 0.88026 1.00092 1.00151 0.92799 0.92158 0.93238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.40 9.33 71.98 0.67 -0.73 16 2 C 0.12 1.53 3.11 30.59 0.10 1.62 16 3 H 0.10 1.35 8.10 -2.39 -0.02 1.34 16 4 O -0.58 -10.11 13.19 -148.98 -1.97 -12.07 16 5 C -0.12 -1.84 2.80 -9.32 -0.03 -1.86 16 6 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 7 C -0.11 -1.27 5.35 31.79 0.17 -1.10 16 8 C 0.09 1.70 6.49 86.73 0.56 2.26 16 9 N -0.62 -19.19 3.32 -811.32 -2.70 -21.89 16 10 C 0.52 22.19 7.85 87.66 0.69 22.88 16 11 O -0.59 -32.02 16.24 -3.02 -0.05 -32.07 16 12 C -0.11 -4.67 4.83 29.85 0.14 -4.52 16 13 C 0.04 2.44 4.26 29.85 0.13 2.57 16 14 C -0.54 -31.67 9.11 25.60 0.23 -31.43 16 15 H 0.08 4.06 7.74 -2.91 -0.02 4.03 16 16 C -0.01 -0.47 5.46 84.65 0.46 -0.01 16 17 N -0.94 -60.75 13.29 21.45 0.28 -60.46 16 18 Si 0.98 44.67 29.54 68.60 2.03 46.70 16 19 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 20 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 21 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 22 C 0.11 2.87 6.24 86.93 0.54 3.41 16 23 H 0.08 0.44 7.32 -2.39 -0.02 0.42 16 24 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 25 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 26 H 0.39 4.04 9.05 -74.06 -0.67 3.37 16 27 H 0.12 0.69 8.11 -2.39 -0.02 0.67 16 28 H 0.09 0.85 8.04 -2.39 -0.02 0.84 16 29 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.10 3.84 8.14 -2.39 -0.02 3.82 16 32 H 0.10 3.84 8.14 -2.39 -0.02 3.82 16 33 H -0.02 -1.27 8.10 -2.39 -0.02 -1.29 16 34 H -0.02 -1.31 8.10 -2.39 -0.02 -1.33 16 35 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 36 H 0.06 1.64 8.01 -2.39 -0.02 1.62 16 37 H 0.05 1.58 8.03 -2.39 -0.02 1.57 16 Total: -1.00 -82.53 307.64 1.64 -80.89 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: 0.37 Total: 5.83 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: 3.67 Total: -6.92 kcal Atomic # 7 Polarization: -79.94 SS G_CDS: -2.41 Total: -82.35 kcal Atomic # 8 Polarization: -42.13 SS G_CDS: -2.01 Total: -44.15 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -82.53 1.64 -80.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326010575.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.927 kcal (2) G-P(sol) polarization free energy of solvation -82.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds