Wall clock time and date at job start Thu Apr 9 2020 12:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42888 * 1 3 3 C 1.42902 * 114.00135 * 2 1 4 4 H 1.08995 * 110.42966 * 27.46466 * 3 2 1 5 5 C 1.54891 * 110.59924 * 264.84307 * 3 2 1 6 6 C 1.54899 * 102.74611 * 203.32172 * 5 3 2 7 7 C 1.54266 * 104.19319 * 37.94376 * 6 5 3 8 8 H 1.09009 * 110.02965 * 95.67370 * 7 6 5 9 9 N 1.46496 * 110.03370 * 217.09962 * 7 6 5 10 10 C 1.34776 * 120.00315 * 272.17546 * 9 7 6 11 11 O 1.21279 * 119.99892 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99786 * 179.97438 * 10 9 7 13 13 H 1.09004 * 109.47114 * 60.00099 * 12 10 9 14 14 C 1.52999 * 109.47432 * 299.99420 * 12 10 9 15 15 C 1.50708 * 109.46698 * 179.97438 * 12 10 9 16 16 H 1.07998 * 119.99811 * 0.02562 * 15 12 10 17 17 C 1.37884 * 119.99714 * 179.97438 * 15 12 10 18 18 N 1.31509 * 119.99849 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 119.99779 * 180.02562 * 17 15 12 20 20 H 1.48498 * 109.47167 * 90.00138 * 19 17 15 21 21 H 1.48499 * 109.46959 * 210.00489 * 19 17 15 22 22 H 1.48500 * 109.46871 * 329.99968 * 19 17 15 23 23 C 1.53869 * 106.60080 * 336.39001 * 7 6 5 24 24 H 1.08997 * 109.47720 * 59.99564 * 1 2 3 25 25 H 1.09002 * 109.47489 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47036 * 299.99601 * 1 2 3 27 27 H 1.08997 * 110.75776 * 321.63810 * 5 3 2 28 28 H 1.08994 * 110.75338 * 85.01097 * 5 3 2 29 29 H 1.08998 * 110.47995 * 156.61949 * 6 5 3 30 30 H 1.08993 * 110.48304 * 279.13227 * 6 5 3 31 31 H 0.97000 * 120.00033 * 92.16431 * 9 7 6 32 32 H 1.08999 * 109.46962 * 180.02562 * 14 12 10 33 33 H 1.09000 * 109.46819 * 300.00251 * 14 12 10 34 34 H 1.08998 * 109.46543 * 60.00058 * 14 12 10 35 35 H 0.97008 * 119.99567 * 179.97438 * 18 17 15 36 36 H 1.09000 * 110.03397 * 240.71393 * 23 7 6 37 37 H 1.09001 * 110.03290 * 119.28917 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3370 2.0217 0.4711 5 6 2.3509 1.7503 -1.4440 6 6 3.4584 2.8104 -1.2227 7 6 4.2938 2.2464 -0.0549 8 1 5.1564 1.7031 -0.4411 9 7 4.7365 3.3366 0.8178 10 6 5.8892 3.9840 0.5558 11 8 6.5603 3.6636 -0.4023 12 6 6.3442 5.1058 1.4533 13 1 6.4787 4.7283 2.4670 14 6 5.2903 6.2149 1.4576 15 6 7.6517 5.6567 0.9452 16 1 8.1074 5.2367 0.0607 17 6 8.2657 6.6975 1.6091 18 7 7.7106 7.2092 2.6859 19 14 9.8861 7.3808 0.9790 20 1 9.6191 8.4799 0.0168 21 1 10.6799 7.9036 2.1199 22 1 10.6474 6.3020 0.2995 23 6 3.3731 1.2896 0.7225 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 2.7302 0.9113 -2.0273 28 1 1.4808 2.1956 -1.9264 29 1 4.0730 2.9122 -2.1171 30 1 3.0189 3.7702 -0.9515 31 1 4.1999 3.5927 1.5842 32 1 5.6196 7.0265 2.1064 33 1 5.1559 6.5923 0.4439 34 1 4.3448 5.8162 1.8252 35 1 8.1428 7.9413 3.1532 36 1 3.2555 1.6364 1.7491 37 1 3.7887 0.2820 0.7137 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334388240.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:40 Heat of formation + Delta-G solvation = -100.279538 kcal Electronic energy + Delta-G solvation = -17602.492403 eV Core-core repulsion = 14765.204036 eV Total energy + Delta-G solvation = -2837.288367 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.55874 -38.29095 -36.12872 -33.69146 -32.67745 -30.36225 -28.79990 -27.31361 -25.94564 -25.10467 -22.60162 -20.86691 -20.17964 -19.41556 -16.99671 -16.40336 -16.07936 -15.71041 -15.26798 -15.03278 -14.38612 -13.96209 -13.64509 -13.45903 -12.94476 -12.63141 -12.47139 -11.91911 -11.82134 -11.50714 -11.37816 -11.23244 -10.99902 -10.76840 -10.70772 -10.64485 -10.53626 -10.23289 -9.92928 -9.68222 -8.94553 -8.56409 -8.39967 -8.27986 -6.00753 -4.03542 3.35501 3.41052 3.48206 3.57393 3.78206 3.95812 4.49549 4.53508 4.59026 4.97278 5.12179 5.13272 5.30826 5.32946 5.41949 5.42960 5.50198 5.60055 5.63257 5.77479 6.00696 6.04334 6.15562 6.30463 6.47406 6.64080 6.85174 6.95560 7.05825 7.19812 7.50656 7.78279 8.02263 8.18755 8.49826 9.05756 9.29888 9.62063 11.06899 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.058609 B = 0.004578 C = 0.004448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.631367 B = 6114.204728 C = 6293.385973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.083 3.917 4 H 0.068 0.932 5 C -0.143 4.143 6 C -0.133 4.133 7 C 0.143 3.857 8 H 0.090 0.910 9 N -0.742 5.742 10 C 0.520 3.480 11 O -0.546 6.546 12 C 0.028 3.972 13 H 0.052 0.948 14 C -0.131 4.131 15 C -0.499 4.499 16 H 0.074 0.926 17 C 0.057 3.943 18 N -0.898 5.898 19 Si 0.899 3.101 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.273 1.273 23 C -0.128 4.128 24 H 0.040 0.960 25 H 0.083 0.917 26 H 0.040 0.960 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.394 0.606 32 H 0.092 0.908 33 H 0.030 0.970 34 H 0.011 0.989 35 H 0.260 0.740 36 H 0.076 0.924 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.616 -9.969 -2.736 17.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C 0.025 3.975 4 H 0.086 0.914 5 C -0.181 4.181 6 C -0.172 4.172 7 C 0.038 3.962 8 H 0.108 0.892 9 N -0.396 5.396 10 C 0.309 3.691 11 O -0.422 6.422 12 C 0.007 3.993 13 H 0.069 0.931 14 C -0.189 4.189 15 C -0.538 4.538 16 H 0.092 0.908 17 C -0.143 4.143 18 N -0.537 5.537 19 Si 0.727 3.273 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.197 1.197 23 C -0.166 4.166 24 H 0.058 0.942 25 H 0.101 0.899 26 H 0.059 0.941 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.229 0.771 32 H 0.111 0.889 33 H 0.049 0.951 34 H 0.030 0.970 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.940 -10.225 -3.297 17.600 hybrid contribution 0.257 0.785 0.093 0.831 sum -13.683 -9.441 -3.204 16.930 Atomic orbital electron populations 1.22758 0.81396 1.02512 0.99887 1.87914 1.19394 1.27944 1.94962 1.23055 0.94575 0.84095 0.95794 0.91364 1.22950 0.98905 0.99344 0.96871 1.22744 0.96679 0.98308 0.99434 1.21342 0.96687 0.88053 0.90167 0.89212 1.46470 1.25465 1.36513 1.31124 1.21966 0.78408 0.82796 0.85902 1.90522 1.54844 1.66346 1.30463 1.18880 0.96077 0.89543 0.94839 0.93050 1.21731 0.94669 1.01592 1.00929 1.21162 1.04061 1.16315 1.12254 0.90798 1.24953 0.97910 0.96543 0.94891 1.69874 1.39176 1.26154 1.18517 0.86458 0.83391 0.79174 0.78229 1.20707 1.21324 1.19741 1.22482 0.93867 1.00994 0.99240 0.94159 0.89850 0.94103 0.90423 0.91597 0.90817 0.90964 0.77134 0.88905 0.95071 0.96973 0.93017 0.90521 0.89774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.85 101.05 1.10 1.35 16 2 O -0.38 -4.36 10.42 -35.23 -0.37 -4.73 16 3 C 0.08 0.91 3.35 -25.07 -0.08 0.82 16 4 H 0.07 0.67 7.82 -51.93 -0.41 0.27 16 5 C -0.14 -1.59 6.62 -24.73 -0.16 -1.75 16 6 C -0.13 -1.82 6.53 -25.07 -0.16 -1.98 16 7 C 0.14 2.14 3.24 -66.82 -0.22 1.93 16 8 H 0.09 1.53 7.57 -51.92 -0.39 1.14 16 9 N -0.74 -12.80 4.93 -52.72 -0.26 -13.06 16 10 C 0.52 11.85 7.15 -10.99 -0.08 11.77 16 11 O -0.55 -14.30 15.11 5.56 0.08 -14.22 16 12 C 0.03 0.69 2.64 -92.92 -0.25 0.45 16 13 H 0.05 1.33 8.14 -51.93 -0.42 0.90 16 14 C -0.13 -3.01 8.87 37.16 0.33 -2.68 16 15 C -0.50 -14.30 8.38 -34.43 -0.29 -14.58 16 16 H 0.07 2.24 6.75 -52.49 -0.35 1.88 16 17 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 18 N -0.90 -25.33 11.32 55.43 0.63 -24.71 16 19 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 23 C -0.13 -1.54 6.33 -25.62 -0.16 -1.70 16 24 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.04 0.29 8.11 -51.93 -0.42 -0.13 16 27 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.07 1.00 8.05 -51.93 -0.42 0.59 16 31 H 0.39 5.88 7.74 -40.82 -0.32 5.56 16 32 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 33 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.01 0.22 7.56 -51.93 -0.39 -0.17 16 35 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 36 H 0.08 0.85 7.62 -51.93 -0.40 0.46 16 37 H 0.08 1.02 8.07 -51.93 -0.42 0.60 16 LS Contribution 302.54 15.07 4.56 4.56 Total: -1.00 -31.42 302.54 -6.37 -37.79 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -5.92 Total: 2.27 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -0.07 Total: -4.87 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: 0.37 Total: -37.77 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.28 Total: -18.95 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.42 -6.37 -37.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334388240.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.490 kcal (2) G-P(sol) polarization free energy of solvation -31.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds