Wall clock time and date at job start Thu Apr 9 2020 12:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42888 * 1 3 3 C 1.42902 * 114.00135 * 2 1 4 4 H 1.08995 * 110.42966 * 27.46466 * 3 2 1 5 5 C 1.54891 * 110.59924 * 264.84307 * 3 2 1 6 6 C 1.54899 * 102.74611 * 203.32172 * 5 3 2 7 7 C 1.54266 * 104.19319 * 37.94376 * 6 5 3 8 8 H 1.09009 * 110.02965 * 95.67370 * 7 6 5 9 9 N 1.46496 * 110.03370 * 217.09962 * 7 6 5 10 10 C 1.34776 * 120.00315 * 272.17546 * 9 7 6 11 11 O 1.21279 * 119.99892 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99786 * 179.97438 * 10 9 7 13 13 H 1.09004 * 109.47114 * 60.00099 * 12 10 9 14 14 C 1.52999 * 109.47432 * 299.99420 * 12 10 9 15 15 C 1.50708 * 109.46698 * 179.97438 * 12 10 9 16 16 H 1.07998 * 119.99811 * 0.02562 * 15 12 10 17 17 C 1.37884 * 119.99714 * 179.97438 * 15 12 10 18 18 N 1.31509 * 119.99849 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 119.99779 * 180.02562 * 17 15 12 20 20 H 1.48498 * 109.47167 * 90.00138 * 19 17 15 21 21 H 1.48499 * 109.46959 * 210.00489 * 19 17 15 22 22 H 1.48500 * 109.46871 * 329.99968 * 19 17 15 23 23 C 1.53869 * 106.60080 * 336.39001 * 7 6 5 24 24 H 1.08997 * 109.47720 * 59.99564 * 1 2 3 25 25 H 1.09002 * 109.47489 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47036 * 299.99601 * 1 2 3 27 27 H 1.08997 * 110.75776 * 321.63810 * 5 3 2 28 28 H 1.08994 * 110.75338 * 85.01097 * 5 3 2 29 29 H 1.08998 * 110.47995 * 156.61949 * 6 5 3 30 30 H 1.08993 * 110.48304 * 279.13227 * 6 5 3 31 31 H 0.97000 * 120.00033 * 92.16431 * 9 7 6 32 32 H 1.08999 * 109.46962 * 180.02562 * 14 12 10 33 33 H 1.09000 * 109.46819 * 300.00251 * 14 12 10 34 34 H 1.08998 * 109.46543 * 60.00058 * 14 12 10 35 35 H 0.97008 * 119.99567 * 179.97438 * 18 17 15 36 36 H 1.09000 * 110.03397 * 240.71393 * 23 7 6 37 37 H 1.09001 * 110.03290 * 119.28917 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3370 2.0217 0.4711 5 6 2.3509 1.7503 -1.4440 6 6 3.4584 2.8104 -1.2227 7 6 4.2938 2.2464 -0.0549 8 1 5.1564 1.7031 -0.4411 9 7 4.7365 3.3366 0.8178 10 6 5.8892 3.9840 0.5558 11 8 6.5603 3.6636 -0.4023 12 6 6.3442 5.1058 1.4533 13 1 6.4787 4.7283 2.4670 14 6 5.2903 6.2149 1.4576 15 6 7.6517 5.6567 0.9452 16 1 8.1074 5.2367 0.0607 17 6 8.2657 6.6975 1.6091 18 7 7.7106 7.2092 2.6859 19 14 9.8861 7.3808 0.9790 20 1 9.6191 8.4799 0.0168 21 1 10.6799 7.9036 2.1199 22 1 10.6474 6.3020 0.2995 23 6 3.3731 1.2896 0.7225 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 2.7302 0.9113 -2.0273 28 1 1.4808 2.1956 -1.9264 29 1 4.0730 2.9122 -2.1171 30 1 3.0189 3.7702 -0.9515 31 1 4.1999 3.5927 1.5842 32 1 5.6196 7.0265 2.1064 33 1 5.1559 6.5923 0.4439 34 1 4.3448 5.8162 1.8252 35 1 8.1428 7.9413 3.1532 36 1 3.2555 1.6364 1.7491 37 1 3.7887 0.2820 0.7137 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334388240.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:40 Heat of formation + Delta-G solvation = -121.680092 kcal Electronic energy + Delta-G solvation = -17603.420401 eV Core-core repulsion = 14765.204036 eV Total energy + Delta-G solvation = -2838.216365 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.93827 -39.56155 -37.26557 -35.74379 -34.17935 -32.30082 -29.76226 -28.37334 -27.17983 -26.76847 -24.41654 -21.83498 -21.39039 -21.12570 -18.35263 -17.99705 -17.62136 -17.07622 -16.64433 -16.15471 -15.78955 -15.69317 -14.95475 -14.57059 -14.51000 -14.13328 -13.67994 -13.56562 -12.97678 -12.92426 -12.76650 -12.58899 -12.58004 -12.28558 -12.21957 -12.18563 -12.00181 -11.77083 -11.53247 -11.02829 -10.59701 -10.48199 -10.26382 -9.90643 -8.14582 -6.24670 1.40725 1.41297 1.53347 1.95673 2.36060 2.54463 2.84464 3.14964 3.53584 3.61509 4.11128 4.28284 4.29652 4.38542 4.50151 4.50855 4.56558 4.65302 4.66291 4.76914 4.86922 4.93321 4.96383 5.00214 5.03852 5.10755 5.22504 5.24758 5.51597 5.69691 5.78015 5.96416 6.23421 6.33003 6.76783 6.88931 7.41197 7.58764 8.91145 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.058609 B = 0.004578 C = 0.004448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.631367 B = 6114.204728 C = 6293.385973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.403 6.403 3 C 0.088 3.912 4 H 0.087 0.913 5 C -0.133 4.133 6 C -0.130 4.130 7 C 0.139 3.861 8 H 0.063 0.937 9 N -0.719 5.719 10 C 0.521 3.479 11 O -0.588 6.588 12 C 0.022 3.978 13 H 0.041 0.959 14 C -0.118 4.118 15 C -0.529 4.529 16 H 0.047 0.953 17 C 0.020 3.980 18 N -0.911 5.911 19 Si 0.954 3.046 20 H -0.274 1.274 21 H -0.274 1.274 22 H -0.279 1.279 23 C -0.120 4.120 24 H 0.049 0.951 25 H 0.095 0.905 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.410 0.590 32 H 0.069 0.931 33 H 0.021 0.979 34 H 0.053 0.947 35 H 0.265 0.735 36 H 0.091 0.909 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.447 -10.186 -2.339 19.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.322 6.322 3 C 0.030 3.970 4 H 0.105 0.895 5 C -0.171 4.171 6 C -0.169 4.169 7 C 0.034 3.966 8 H 0.082 0.918 9 N -0.372 5.372 10 C 0.311 3.689 11 O -0.468 6.468 12 C 0.001 3.999 13 H 0.059 0.941 14 C -0.176 4.176 15 C -0.568 4.568 16 H 0.065 0.935 17 C -0.179 4.179 18 N -0.550 5.550 19 Si 0.780 3.220 20 H -0.200 1.200 21 H -0.199 1.199 22 H -0.205 1.205 23 C -0.158 4.158 24 H 0.068 0.932 25 H 0.113 0.887 26 H 0.070 0.930 27 H 0.091 0.909 28 H 0.104 0.896 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.247 0.753 32 H 0.088 0.912 33 H 0.041 0.959 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.109 0.891 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -15.831 -10.455 -2.870 19.188 hybrid contribution 0.778 0.798 -0.013 1.115 sum -15.053 -9.657 -2.884 18.115 Atomic orbital electron populations 1.22973 0.79631 1.03746 1.00880 1.87888 1.21354 1.27921 1.95032 1.22988 0.94145 0.84658 0.95192 0.89483 1.22891 0.98453 0.98280 0.97492 1.22665 0.97059 0.99307 0.97880 1.21495 0.96662 0.87639 0.90836 0.91823 1.46186 1.23649 1.35917 1.31473 1.21542 0.79627 0.82735 0.85042 1.90502 1.56588 1.67580 1.32121 1.18828 0.95649 0.91008 0.94420 0.94092 1.21539 0.95863 1.00169 1.00006 1.21305 1.06165 1.17317 1.11997 0.93480 1.25586 1.00706 0.96564 0.95083 1.69947 1.40069 1.26206 1.18795 0.85612 0.79905 0.78351 0.78117 1.19961 1.19924 1.20468 1.22396 0.93978 0.99827 0.99630 0.93231 0.88654 0.92996 0.90853 0.89600 0.92733 0.90735 0.75344 0.91182 0.95934 0.92777 0.92613 0.89090 0.89955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.85 113.37 1.23 1.54 16 2 O -0.40 -8.05 10.42 -148.98 -1.55 -9.60 16 3 C 0.09 1.67 3.35 31.67 0.11 1.78 16 4 H 0.09 1.36 7.82 -2.39 -0.02 1.34 16 5 C -0.13 -2.67 6.62 31.89 0.21 -2.46 16 6 C -0.13 -3.43 6.53 31.67 0.21 -3.22 16 7 C 0.14 4.05 3.24 45.71 0.15 4.20 16 8 H 0.06 2.22 7.57 -2.38 -0.02 2.20 16 9 N -0.72 -24.15 4.93 -439.11 -2.16 -26.32 16 10 C 0.52 24.05 7.15 87.66 0.63 24.68 16 11 O -0.59 -31.84 15.11 -3.03 -0.05 -31.89 16 12 C 0.02 1.12 2.64 -12.28 -0.03 1.09 16 13 H 0.04 2.14 8.14 -2.39 -0.02 2.12 16 14 C -0.12 -5.32 8.87 71.98 0.64 -4.68 16 15 C -0.53 -31.03 8.38 25.60 0.21 -30.81 16 16 H 0.05 2.96 6.75 -2.91 -0.02 2.94 16 17 C 0.02 1.11 5.30 84.66 0.45 1.56 16 18 N -0.91 -51.31 11.32 21.45 0.24 -51.07 16 19 Si 0.95 45.32 29.54 68.60 2.03 47.34 16 20 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 21 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 22 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 23 C -0.12 -2.65 6.33 31.32 0.20 -2.45 16 24 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 25 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.05 0.56 8.11 -2.38 -0.02 0.54 16 27 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.07 1.93 8.05 -2.39 -0.02 1.92 16 31 H 0.41 11.28 7.74 -92.71 -0.72 10.56 16 32 H 0.07 3.51 6.07 -2.39 -0.01 3.50 16 33 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.05 1.93 7.56 -2.39 -0.02 1.91 16 35 H 0.26 14.10 8.31 -92.70 -0.77 13.33 16 36 H 0.09 1.75 7.62 -2.39 -0.02 1.74 16 37 H 0.08 1.87 8.07 -2.39 -0.02 1.85 16 Total: -1.00 -68.53 302.54 2.83 -65.70 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 0.33 Total: 14.61 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: 4.00 Total: -8.79 kcal Atomic # 7 Polarization: -75.46 SS G_CDS: -1.92 Total: -77.38 kcal Atomic # 8 Polarization: -39.89 SS G_CDS: -1.60 Total: -41.49 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.34 kcal Total: -68.53 2.83 -65.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334388240.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.982 kcal (2) G-P(sol) polarization free energy of solvation -68.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds