Wall clock time and date at job start Thu Apr 9 2020 12:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45203 * 109.47046 * 2 1 4 4 C 1.34233 * 116.99857 * 179.97438 * 3 2 1 5 5 O 1.20829 * 119.99888 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99916 * 179.97438 * 4 3 2 7 7 H 1.09006 * 110.43233 * 57.46275 * 6 4 3 8 8 C 1.54265 * 110.59970 * 294.84688 * 6 4 3 9 9 C 1.53877 * 106.59605 * 217.65480 * 8 6 4 10 10 C 1.54463 * 106.68421 * 0.15594 * 9 8 6 11 11 H 1.09003 * 110.40626 * 264.75463 * 10 9 8 12 12 N 1.46900 * 110.65967 * 142.05489 * 10 9 8 13 13 C 1.46900 * 111.00339 * 90.23953 * 12 10 9 14 14 C 1.50703 * 109.47335 * 179.97438 * 13 12 10 15 15 H 1.07999 * 120.00065 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99790 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00359 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99833 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47096 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47236 * 119.99836 * 18 16 14 21 21 H 1.48504 * 109.47372 * 240.00233 * 18 16 14 22 22 C 1.54887 * 110.48595 * 180.02562 * 6 4 3 23 23 H 1.08996 * 109.47419 * 59.99912 * 1 2 3 24 24 H 1.09004 * 109.46898 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46641 * 299.99383 * 1 2 3 26 26 H 1.09007 * 109.47180 * 240.00625 * 2 1 3 27 27 H 1.08999 * 109.47631 * 120.00560 * 2 1 3 28 28 H 1.08995 * 110.03137 * 336.93404 * 8 6 4 29 29 H 1.08993 * 110.03408 * 98.37138 * 8 6 4 30 30 H 1.08999 * 110.03493 * 119.28247 * 9 8 6 31 31 H 1.08997 * 110.03317 * 240.71381 * 9 8 6 32 32 H 1.00898 * 110.99998 * 326.28005 * 12 10 9 33 33 H 1.09002 * 109.46812 * 300.00257 * 13 12 10 34 34 H 1.09001 * 109.46940 * 59.99648 * 13 12 10 35 35 H 0.96995 * 120.00321 * 179.97438 * 17 16 14 36 36 H 1.09002 * 110.75856 * 275.07193 * 22 6 4 37 37 H 1.09006 * 110.75640 * 38.26179 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9375 0.0000 7 1 3.5581 3.4996 0.8606 8 6 3.5681 3.6701 -1.3110 9 6 4.8003 4.5103 -1.6900 10 6 5.8629 4.2569 -0.5979 11 1 5.8161 5.0335 0.1654 12 7 7.2070 4.1939 -1.1873 13 6 7.8318 5.5231 -1.2164 14 6 9.2063 5.4188 -1.8256 15 1 9.5783 4.4610 -2.1583 16 6 9.9885 6.5464 -1.9592 17 7 9.5353 7.7128 -1.5546 18 14 11.6918 6.4172 -2.7149 19 1 11.9630 5.0052 -3.0861 20 1 11.7607 7.2696 -3.9290 21 1 12.7059 6.8743 -1.7310 22 6 5.4687 2.8838 0.0001 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3632 0.5137 0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.3536 2.9463 -2.0971 29 1 2.7068 4.3197 -1.1556 30 1 5.1837 4.1943 -2.6601 31 1 4.5368 5.5676 -1.7186 32 1 7.1784 3.7875 -2.1103 33 1 7.2198 6.1993 -1.8133 34 1 7.9135 5.9085 -0.2001 35 1 10.0857 8.5059 -1.6482 36 1 5.8516 2.7808 1.0154 37 1 5.8271 2.0703 -0.6307 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571516237.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:06 Heat of formation + Delta-G solvation = -107.938868 kcal Electronic energy + Delta-G solvation = -17128.241814 eV Core-core repulsion = 14290.621313 eV Total energy + Delta-G solvation = -2837.620501 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.66958 -38.12854 -36.54771 -34.14438 -32.25694 -31.79558 -28.82670 -28.13996 -25.50437 -23.69467 -22.08622 -21.63988 -20.03832 -19.88354 -17.66318 -16.81586 -16.55469 -16.15115 -15.55834 -14.66002 -14.20568 -14.13014 -13.59127 -13.28212 -13.18309 -13.05759 -12.56454 -12.19013 -11.93358 -11.77249 -11.64449 -11.36311 -11.15222 -11.00157 -10.72592 -10.67561 -10.65008 -10.56904 -10.34262 -10.16779 -9.86234 -9.14133 -8.48133 -7.25212 -6.02543 -4.04179 2.19271 2.57782 3.31971 3.39256 3.44833 4.43179 4.46640 4.61441 4.66760 4.74108 4.81019 5.00837 5.09784 5.33580 5.37968 5.48138 5.49312 5.51363 5.60842 5.67371 5.70767 5.76923 5.94920 6.05985 6.19406 6.35144 6.36969 6.53444 6.63895 7.27124 7.44226 7.73593 7.80913 8.14245 8.41345 8.63339 9.05748 9.60917 11.08582 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.066696 B = 0.003768 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.713942 B = 7428.299515 C = 7629.274489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.360 6.360 4 C 0.469 3.531 5 O -0.505 6.505 6 C -0.090 4.090 7 H 0.110 0.890 8 C -0.104 4.104 9 C -0.153 4.153 10 C 0.085 3.915 11 H 0.079 0.921 12 N -0.682 5.682 13 C 0.194 3.806 14 C -0.514 4.514 15 H 0.063 0.937 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.898 3.102 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.284 1.284 22 C -0.095 4.095 23 H 0.066 0.934 24 H 0.078 0.922 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.331 0.669 33 H -0.012 1.012 34 H 0.028 0.972 35 H 0.261 0.739 36 H 0.073 0.927 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.870 -10.834 2.545 21.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.015 4.015 3 O -0.277 6.277 4 C 0.312 3.688 5 O -0.392 6.392 6 C -0.109 4.109 7 H 0.128 0.872 8 C -0.142 4.142 9 C -0.192 4.192 10 C -0.026 4.026 11 H 0.097 0.903 12 N -0.311 5.311 13 C 0.067 3.933 14 C -0.552 4.552 15 H 0.081 0.919 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.726 3.274 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.133 4.133 23 H 0.085 0.915 24 H 0.096 0.904 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.149 0.851 33 H 0.005 0.995 34 H 0.046 0.954 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -17.285 -11.139 3.143 20.802 hybrid contribution 0.372 0.339 -1.075 1.187 sum -16.913 -10.800 2.067 20.173 Atomic orbital electron populations 1.21798 0.92731 1.02845 1.03515 1.23002 0.95292 0.80638 1.02542 1.86534 1.24999 1.32014 1.84169 1.23853 0.80182 0.92892 0.71841 1.90665 1.60370 1.43135 1.44995 1.22013 0.98105 0.89197 1.01615 0.87157 1.21994 0.98982 0.98509 0.94723 1.22992 0.95908 0.99971 1.00371 1.22396 0.88733 0.95619 0.95886 0.90253 1.60632 1.16149 1.27025 1.27282 1.19589 0.93475 0.83404 0.96813 1.21249 1.00129 0.94219 1.39645 0.91916 1.24986 0.98583 0.95250 0.95785 1.69967 1.37393 0.98783 1.47657 0.86438 0.84055 0.78137 0.78759 1.19639 1.21126 1.20997 1.22470 0.89130 0.99202 1.02506 0.91476 0.90367 0.91498 0.91329 0.91336 0.91778 0.90856 0.91400 0.91417 0.85143 0.99458 0.95434 0.92989 0.90847 0.89848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.29 37.16 0.38 -0.60 16 2 C 0.06 0.56 6.19 37.16 0.23 0.79 16 3 O -0.36 -4.26 10.22 -39.26 -0.40 -4.66 16 4 C 0.47 6.38 7.12 36.01 0.26 6.64 16 5 O -0.50 -8.27 15.47 -18.75 -0.29 -8.56 16 6 C -0.09 -1.13 3.36 -90.11 -0.30 -1.44 16 7 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 8 C -0.10 -1.25 6.37 -25.61 -0.16 -1.42 16 9 C -0.15 -2.25 6.51 -25.51 -0.17 -2.42 16 10 C 0.09 1.47 3.19 -65.96 -0.21 1.26 16 11 H 0.08 1.41 7.83 -51.93 -0.41 1.00 16 12 N -0.68 -14.59 6.35 -106.14 -0.67 -15.26 16 13 C 0.19 5.05 5.30 -4.97 -0.03 5.02 16 14 C -0.51 -14.64 9.32 -34.44 -0.32 -14.96 16 15 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 16 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 18 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 19 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 C -0.09 -1.45 5.60 -24.75 -0.14 -1.59 16 23 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 27 H 0.07 0.64 8.13 -51.93 -0.42 0.21 16 28 H 0.06 0.76 7.83 -51.93 -0.41 0.36 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 1.03 7.52 -51.93 -0.39 0.64 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.33 6.83 8.07 -39.29 -0.32 6.51 16 33 H -0.01 -0.34 8.14 -51.93 -0.42 -0.76 16 34 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.08 1.40 7.46 -51.93 -0.39 1.02 16 LS Contribution 309.21 15.07 4.66 4.66 Total: -1.00 -31.49 309.21 -7.65 -39.13 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -6.10 Total: 1.26 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -0.56 Total: -7.24 kcal Atomic # 7 Polarization: -41.46 SS G_CDS: 0.06 Total: -41.40 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: -0.69 Total: -13.22 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.49 -7.65 -39.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571516237.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.806 kcal (2) G-P(sol) polarization free energy of solvation -31.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds