Wall clock time and date at job start Thu Apr 9 2020 12:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99836 * 2 1 4 4 H 1.48503 * 109.46944 * 269.99875 * 3 2 1 5 5 H 1.48502 * 109.47248 * 29.99631 * 3 2 1 6 6 H 1.48498 * 109.47344 * 149.99736 * 3 2 1 7 7 C 1.37878 * 120.00113 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99957 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99893 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47272 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47230 * 179.97438 * 10 9 7 12 12 N 1.46503 * 109.47069 * 180.02562 * 11 10 9 13 13 C 1.34776 * 119.99900 * 180.02562 * 12 11 10 14 14 O 1.21584 * 120.00278 * 0.02562 * 13 12 11 15 15 N 1.34780 * 119.99945 * 180.02562 * 13 12 11 16 16 C 1.46498 * 120.00148 * 180.02562 * 15 13 12 17 17 H 1.08997 * 110.28753 * 32.87418 * 16 15 13 18 18 C 1.54266 * 110.32409 * 154.99884 * 16 15 13 19 19 C 1.54377 * 105.06190 * 118.99653 * 18 16 15 20 20 N 1.48562 * 104.59407 * 336.14868 * 19 18 16 21 21 C 1.48562 * 104.22433 * 39.48055 * 20 19 18 22 22 H 0.96996 * 120.00340 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47349 * 59.99808 * 9 7 2 24 24 H 1.09006 * 109.47556 * 299.99817 * 9 7 2 25 25 H 1.09002 * 109.46909 * 59.99760 * 10 9 7 26 26 H 1.09006 * 109.46861 * 300.00464 * 10 9 7 27 27 H 1.09002 * 109.47351 * 60.00054 * 11 10 9 28 28 H 1.09004 * 109.47135 * 299.99797 * 11 10 9 29 29 H 0.97000 * 119.99860 * 0.02562 * 12 11 10 30 30 H 0.97001 * 119.99526 * 359.97438 * 15 13 12 31 31 H 1.09005 * 110.32054 * 237.89568 * 18 16 15 32 32 H 1.09003 * 110.32265 * 0.09807 * 18 16 15 33 33 H 1.09000 * 110.40820 * 94.92490 * 19 18 16 34 34 H 1.08989 * 110.41015 * 217.36711 * 19 18 16 35 35 H 1.00897 * 110.99939 * 159.04236 * 20 19 18 36 36 H 1.08998 * 110.41528 * 201.73764 * 21 20 19 37 37 H 1.08999 * 110.41058 * 79.29526 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9870 0.0012 12 7 2.4324 -6.1006 0.0018 13 6 1.9831 -7.3712 0.0019 14 8 0.7878 -7.5934 0.0010 15 7 2.8590 -8.3957 0.0030 16 6 2.3707 -9.7769 0.0025 17 1 1.4358 -9.8470 -0.5534 18 6 3.4289 -10.7191 -0.6076 19 6 3.7818 -11.7108 0.5217 20 7 3.4361 -10.9903 1.7741 21 6 2.1733 -10.2785 1.4492 22 1 -0.4850 0.8400 0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6241 -2.5567 0.8903 25 1 2.8720 -3.6043 0.8905 26 1 2.8721 -3.6043 -0.8895 27 1 0.8534 -5.0451 -0.8886 28 1 0.8540 -5.0445 0.8914 29 1 3.3861 -5.9233 0.0021 30 1 3.8126 -8.2184 0.0033 31 1 3.0133 -11.2517 -1.4630 32 1 4.3123 -10.1541 -0.9051 33 1 3.1869 -12.6194 0.4293 34 1 4.8454 -11.9479 0.5007 35 1 3.3010 -11.6363 2.5373 36 1 2.0258 -9.4374 2.1264 37 1 1.3267 -10.9631 1.5019 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583215864.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:14 Heat of formation + Delta-G solvation = -69.591344 kcal Electronic energy + Delta-G solvation = -16792.167891 eV Core-core repulsion = 13988.503015 eV Total energy + Delta-G solvation = -2803.664876 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.21565 -39.21462 -36.93681 -35.19745 -34.89000 -32.90526 -30.61639 -29.34710 -28.08588 -24.98406 -22.85972 -22.28539 -21.90548 -21.41982 -19.29860 -18.52559 -17.60619 -17.54033 -16.74969 -16.53015 -16.08304 -15.51881 -15.26807 -15.11253 -14.26552 -14.14300 -13.72263 -13.67735 -13.26829 -13.20590 -12.77218 -12.72691 -12.53541 -12.42876 -12.35128 -11.90428 -11.65955 -11.60836 -11.28240 -11.12092 -10.54502 -10.38052 -9.79310 -9.54047 -8.18621 -6.30192 1.42368 1.43951 1.54908 1.72631 2.14477 2.42890 3.15098 3.32702 3.33544 3.69246 3.74398 4.18321 4.22430 4.24756 4.32235 4.43553 4.57522 4.68469 4.78117 4.89731 4.97072 5.00849 5.03184 5.11475 5.18061 5.47639 5.52639 5.55999 5.72276 5.76044 5.85335 6.04576 6.23761 6.36302 6.87244 7.13049 7.39382 7.59743 8.93648 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.067374 B = 0.003244 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.489508 B = 8629.080615 C = 8777.790771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.260 1.260 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.024 3.976 10 C -0.100 4.100 11 C 0.150 3.850 12 N -0.731 5.731 13 C 0.696 3.304 14 O -0.641 6.641 15 N -0.719 5.719 16 C 0.153 3.847 17 H 0.077 0.923 18 C -0.124 4.124 19 C 0.036 3.964 20 N -0.673 5.673 21 C 0.026 3.974 22 H 0.263 0.737 23 H -0.008 1.008 24 H -0.008 1.008 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.047 0.953 28 H 0.045 0.955 29 H 0.411 0.589 30 H 0.411 0.589 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.054 0.946 34 H 0.096 0.904 35 H 0.346 0.654 36 H 0.061 0.939 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.186 -23.260 0.113 25.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.792 3.208 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.184 1.184 7 C -0.579 4.579 8 H 0.085 0.915 9 C -0.014 4.014 10 C -0.138 4.138 11 C 0.025 3.975 12 N -0.386 5.386 13 C 0.396 3.604 14 O -0.523 6.523 15 N -0.375 5.375 16 C 0.047 3.953 17 H 0.095 0.905 18 C -0.163 4.163 19 C -0.093 4.093 20 N -0.303 5.303 21 C -0.105 4.105 22 H 0.072 0.928 23 H 0.011 0.989 24 H 0.010 0.990 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.248 0.752 30 H 0.248 0.752 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.073 0.927 34 H 0.114 0.886 35 H 0.162 0.838 36 H 0.079 0.921 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.447 -22.784 0.050 25.064 hybrid contribution -0.186 0.531 0.100 0.572 sum 10.261 -22.252 0.150 24.505 Atomic orbital electron populations 1.70115 1.07974 1.27805 1.51728 1.26038 0.95752 1.03599 0.94783 0.85401 0.78679 0.78215 0.78463 1.19791 1.21057 1.18390 1.21689 0.93774 0.92006 1.50423 0.91494 1.18942 0.94446 0.92945 0.95076 1.21588 0.98432 0.91689 1.02108 1.21065 0.91356 0.84673 1.00383 1.45038 1.10813 1.03601 1.79166 1.16221 0.85148 0.81454 0.77551 1.90880 1.16417 1.84830 1.60183 1.45041 1.09088 1.04174 1.79204 1.21592 0.98336 0.79867 0.95523 0.90518 1.22657 0.98506 0.96604 0.98521 1.23007 1.02399 0.95256 0.88677 1.63695 1.29740 1.29711 1.07107 1.23274 0.92001 0.98479 0.96732 0.92808 0.98934 0.98983 0.91435 0.91295 0.93507 0.93668 0.75232 0.75231 0.88791 0.89229 0.92741 0.88581 0.83792 0.92074 0.92813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.69 13.29 21.45 0.28 -57.41 16 2 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 3 Si 0.97 44.04 29.54 68.60 2.03 46.07 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 6 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 7 C -0.54 -30.45 9.11 25.60 0.23 -30.22 16 8 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 9 C 0.02 1.25 4.97 29.85 0.15 1.40 16 10 C -0.10 -3.93 5.27 30.59 0.16 -3.77 16 11 C 0.15 5.52 5.67 86.38 0.49 6.01 16 12 N -0.73 -21.18 5.56 -478.54 -2.66 -23.84 16 13 C 0.70 21.55 8.56 179.05 1.53 23.08 16 14 O -0.64 -25.96 15.99 -3.98 -0.06 -26.02 16 15 N -0.72 -15.47 5.07 -453.53 -2.30 -17.77 16 16 C 0.15 2.97 3.40 45.89 0.16 3.12 16 17 H 0.08 1.81 7.56 -2.39 -0.02 1.79 16 18 C -0.12 -1.46 6.76 31.49 0.21 -1.25 16 19 C 0.04 0.37 7.47 86.45 0.65 1.01 16 20 N -0.67 -9.78 7.62 -500.86 -3.82 -13.60 16 21 C 0.03 0.50 7.19 86.45 0.62 1.12 16 22 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 23 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 24 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 25 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 26 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 27 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 29 H 0.41 9.01 8.49 -92.71 -0.79 8.22 16 30 H 0.41 6.49 8.37 -92.71 -0.78 5.71 16 31 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.09 0.91 7.67 -2.39 -0.02 0.90 16 33 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.35 3.99 8.92 -89.70 -0.80 3.19 16 36 H 0.06 1.49 8.06 -2.39 -0.02 1.47 16 37 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -72.60 308.79 -3.15 -75.75 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -1.29 Total: 16.10 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: 4.66 Total: 0.73 kcal Atomic # 7 Polarization: -104.13 SS G_CDS: -8.50 Total: -112.63 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: -0.06 Total: -26.02 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -72.60 -3.15 -75.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583215864.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.161 kcal (2) G-P(sol) polarization free energy of solvation -72.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds