Wall clock time and date at job start Thu Apr 9 2020 12:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 109.47422 * 2 1 4 4 C 1.53007 * 109.46737 * 240.00077 * 2 1 3 5 5 C 1.50704 * 109.47012 * 174.99893 * 4 2 1 6 6 H 1.08000 * 119.99724 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99849 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99893 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99899 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.46942 * 90.00029 * 9 7 5 11 11 H 1.48496 * 109.47380 * 210.00108 * 9 7 5 12 12 H 1.48501 * 109.47157 * 330.00402 * 9 7 5 13 13 N 1.46898 * 109.47351 * 120.00873 * 2 1 3 14 14 C 1.48530 * 111.00176 * 49.08648 * 13 2 1 15 15 C 1.54936 * 103.22887 * 200.28573 * 14 13 2 16 16 C 1.54593 * 102.91987 * 37.41069 * 15 14 13 17 17 H 1.09012 * 110.39287 * 219.08613 * 16 15 14 18 18 N 1.46502 * 110.30980 * 96.96501 * 16 15 14 19 19 C 1.34779 * 120.00300 * 89.27592 * 18 16 15 20 20 N 1.34776 * 120.00073 * 179.72571 * 19 18 16 21 21 O 1.21594 * 119.99538 * 0.02562 * 19 18 16 22 22 C 1.47903 * 110.99586 * 291.69119 * 13 2 1 23 23 H 1.08998 * 109.46771 * 292.45910 * 1 2 3 24 24 H 1.09002 * 109.47039 * 52.45302 * 1 2 3 25 25 H 1.08998 * 109.47414 * 172.45559 * 1 2 3 26 26 H 1.08994 * 109.47511 * 295.00442 * 4 2 1 27 27 H 1.09007 * 109.46720 * 55.00721 * 4 2 1 28 28 H 0.96997 * 119.99520 * 179.97438 * 8 7 5 29 29 H 1.09001 * 110.66568 * 318.71559 * 14 13 2 30 30 H 1.08994 * 110.67114 * 81.68178 * 14 13 2 31 31 H 1.09008 * 110.72021 * 279.05712 * 15 14 13 32 32 H 1.08995 * 110.72611 * 155.77037 * 15 14 13 33 33 H 0.96994 * 119.99908 * 269.28312 * 18 16 15 34 34 H 0.97001 * 119.99586 * 180.27772 * 20 19 18 35 35 H 0.96994 * 120.00075 * 0.28149 * 20 19 18 36 36 H 1.09000 * 109.91783 * 26.49374 * 22 13 2 37 37 H 1.08998 * 109.91802 * 265.19765 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5418 -0.6150 -1.3129 6 1 4.0789 -0.0862 -0.5393 7 6 4.2302 -1.1927 -2.3586 8 7 3.5760 -1.8361 -3.3008 9 14 6.0919 -1.0615 -2.4370 10 1 6.6998 -2.2149 -1.7259 11 1 6.5294 -1.0685 -3.8560 12 1 6.5267 0.2031 -1.7911 13 7 2.0197 -0.6927 1.1993 14 6 1.3410 -2.0025 1.3720 15 6 1.5597 -2.3201 2.8726 16 6 1.4293 -0.9327 3.5421 17 1 2.1607 -0.8275 4.3436 18 7 0.0734 -0.7456 4.0644 19 6 -0.2247 -1.1343 5.3200 20 7 -1.4706 -0.9571 5.8024 21 8 0.6319 -1.6399 6.0194 22 6 1.7152 0.0834 2.4210 23 1 -0.3633 0.3926 0.9497 24 1 -0.3633 0.6263 -0.8148 25 1 -0.3634 -1.0187 -0.1349 26 1 1.7515 -1.7715 -1.2058 27 1 1.6053 -0.2616 -2.1371 28 1 4.0603 -2.2422 -4.0366 29 1 0.2776 -1.9172 1.1479 30 1 1.8055 -2.7623 0.7436 31 1 2.5536 -2.7362 3.0378 32 1 0.7902 -2.9992 3.2393 33 1 -0.6098 -0.3421 3.5066 34 1 -1.6841 -1.2332 6.7075 35 1 -2.1538 -0.5536 5.2446 36 1 0.8383 0.7091 2.2545 37 1 2.5707 0.7027 2.6904 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593018873.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:27 Heat of formation + Delta-G solvation = -28.092826 kcal Electronic energy + Delta-G solvation = -17915.684990 eV Core-core repulsion = 15113.819625 eV Total energy + Delta-G solvation = -2801.865365 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.18882 -38.66217 -35.03356 -33.85940 -32.76052 -31.55189 -28.84769 -27.48451 -27.31272 -23.37467 -22.01653 -21.58174 -20.35864 -18.75559 -18.33299 -17.29081 -16.15195 -15.83520 -15.44825 -14.89503 -14.45457 -14.30947 -14.21265 -13.57145 -13.18033 -12.46312 -11.93113 -11.86945 -11.73293 -11.54838 -11.49065 -10.92796 -10.80218 -10.64562 -10.54610 -10.38172 -10.26267 -9.94940 -9.84626 -9.20752 -9.05120 -8.95268 -8.25178 -7.61061 -5.87918 -3.85764 2.83430 3.14075 3.41412 3.47196 3.51291 4.33393 4.57596 4.67636 4.81878 5.04706 5.29558 5.49438 5.53092 5.71596 5.74801 5.78214 5.85929 5.95278 6.09664 6.17389 6.30384 6.40958 6.48989 6.54871 6.63916 6.71758 6.77481 6.95317 7.45712 7.55589 7.81110 7.85767 7.97047 8.12679 8.54101 8.58271 9.20125 9.76210 11.24116 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.041020 B = 0.005291 C = 0.004988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.423846 B = 5291.118786 C = 5612.665896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.076 3.924 3 H 0.070 0.930 4 C 0.033 3.967 5 C -0.491 4.491 6 H 0.060 0.940 7 C 0.051 3.949 8 N -0.905 5.905 9 Si 0.890 3.110 10 H -0.282 1.282 11 H -0.290 1.290 12 H -0.275 1.275 13 N -0.484 5.484 14 C 0.033 3.967 15 C -0.131 4.131 16 C 0.151 3.849 17 H 0.096 0.904 18 N -0.735 5.735 19 C 0.704 3.296 20 N -0.871 5.871 21 O -0.595 6.595 22 C 0.024 3.976 23 H 0.038 0.962 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.018 0.982 27 H 0.018 0.982 28 H 0.257 0.743 29 H 0.044 0.956 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.393 0.607 34 H 0.412 0.588 35 H 0.395 0.605 36 H 0.047 0.953 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.418 3.173 13.300 17.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.032 4.032 3 H 0.088 0.912 4 C -0.004 4.004 5 C -0.529 4.529 6 H 0.079 0.921 7 C -0.149 4.149 8 N -0.545 5.545 9 Si 0.719 3.281 10 H -0.209 1.209 11 H -0.217 1.217 12 H -0.200 1.200 13 N -0.207 5.207 14 C -0.094 4.094 15 C -0.171 4.171 16 C 0.045 3.955 17 H 0.114 0.886 18 N -0.391 5.391 19 C 0.402 3.598 20 N -0.439 5.439 21 O -0.473 6.473 22 C -0.105 4.105 23 H 0.057 0.943 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.036 0.964 27 H 0.036 0.964 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.227 0.773 34 H 0.244 0.756 35 H 0.223 0.777 36 H 0.065 0.935 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.939 2.619 13.513 16.978 hybrid contribution -0.715 0.407 -0.276 0.868 sum -10.654 3.027 13.238 17.260 Atomic orbital electron populations 1.22532 0.99833 1.01652 1.00253 1.22076 0.90032 0.98595 0.92489 0.91193 1.19129 0.96413 0.95290 0.89570 1.21172 0.91776 1.33046 1.06939 0.92130 1.25001 0.98052 0.95848 0.95961 1.69966 1.35223 1.37021 1.12339 0.86621 0.86373 0.78399 0.76713 1.20866 1.21661 1.20018 1.65064 1.53396 1.01964 1.00302 1.23299 0.97167 0.93619 0.95358 1.22914 1.02635 0.96092 0.95416 1.21754 0.82071 0.95443 0.96209 0.88585 1.45382 1.13635 1.66641 1.13482 1.16014 0.82850 0.78852 0.82064 1.43016 1.11210 1.70101 1.19618 1.90970 1.47375 1.50225 1.58744 1.23225 1.00418 0.95991 0.90839 0.94262 0.92498 0.92467 0.96394 0.96402 0.93337 0.93809 0.89414 0.89975 0.91426 0.77287 0.75596 0.77735 0.93520 0.89756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.89 8.18 37.16 0.30 -2.58 16 2 C 0.08 1.49 2.22 -67.71 -0.15 1.34 16 3 H 0.07 1.39 8.10 -51.93 -0.42 0.97 16 4 C 0.03 0.83 4.46 -27.88 -0.12 0.70 16 5 C -0.49 -13.67 8.84 -34.44 -0.30 -13.98 16 6 H 0.06 1.69 7.74 -52.49 -0.41 1.28 16 7 C 0.05 1.45 5.46 -17.82 -0.10 1.36 16 8 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 9 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 10 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 N -0.48 -8.79 4.95 -222.51 -1.10 -9.90 16 14 C 0.03 0.56 5.57 -1.90 -0.01 0.55 16 15 C -0.13 -1.94 6.78 -24.87 -0.17 -2.11 16 16 C 0.15 2.06 3.34 -66.58 -0.22 1.84 16 17 H 0.10 1.43 7.56 -51.92 -0.39 1.04 16 18 N -0.74 -8.24 5.06 -57.34 -0.29 -8.53 16 19 C 0.70 8.71 8.84 -86.92 -0.77 7.94 16 20 N -0.87 -6.57 8.88 27.64 0.25 -6.32 16 21 O -0.60 -10.16 16.83 5.28 0.09 -10.07 16 22 C 0.02 0.35 6.21 -2.76 -0.02 0.33 16 23 H 0.04 0.51 6.28 -51.93 -0.33 0.18 16 24 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.06 0.91 6.40 -51.93 -0.33 0.58 16 26 H 0.02 0.47 7.09 -51.93 -0.37 0.11 16 27 H 0.02 0.47 8.14 -51.92 -0.42 0.05 16 28 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.04 0.68 5.46 -51.93 -0.28 0.40 16 30 H 0.09 1.69 7.64 -51.93 -0.40 1.29 16 31 H 0.08 1.27 8.14 -51.92 -0.42 0.84 16 32 H 0.07 0.96 8.05 -51.93 -0.42 0.54 16 33 H 0.39 3.47 8.35 -40.82 -0.34 3.13 16 34 H 0.41 2.66 8.93 -40.82 -0.36 2.30 16 35 H 0.40 1.77 8.84 -40.82 -0.36 1.41 16 36 H 0.05 0.61 5.50 -51.93 -0.29 0.32 16 37 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 296.57 15.07 4.47 4.47 Total: -1.00 -33.30 296.57 -7.95 -41.26 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -5.52 Total: 3.08 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -1.56 Total: -4.62 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: -0.41 Total: -51.21 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.09 Total: -10.07 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -33.30 -7.95 -41.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593018873.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.163 kcal (2) G-P(sol) polarization free energy of solvation -33.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds