Wall clock time and date at job start Thu Apr 9 2020 12:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08990 * 109.47046 * 2 1 4 4 C 1.53000 * 109.46940 * 120.00292 * 2 1 3 5 5 C 1.50701 * 109.46901 * 184.99924 * 4 2 1 6 6 H 1.08003 * 119.99761 * 0.02562 * 5 4 2 7 7 C 1.37870 * 119.99797 * 179.97438 * 5 4 2 8 8 N 1.31517 * 120.00354 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99875 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47167 * 89.99974 * 9 7 5 11 11 H 1.48500 * 109.47219 * 209.99869 * 9 7 5 12 12 H 1.48496 * 109.46884 * 329.99921 * 9 7 5 13 13 N 1.46907 * 109.46867 * 239.99948 * 2 1 3 14 14 C 1.47436 * 111.00054 * 305.92845 * 13 2 1 15 15 C 1.54323 * 107.23098 * 123.26363 * 14 13 2 16 16 C 1.55424 * 103.04999 * 22.27843 * 15 14 13 17 17 H 1.08999 * 111.00189 * 82.38865 * 16 15 14 18 18 N 1.46500 * 111.10871 * 206.30195 * 16 15 14 19 19 C 1.34772 * 119.99917 * 267.17449 * 18 16 15 20 20 N 1.34778 * 120.00364 * 179.97438 * 19 18 16 21 21 O 1.21586 * 119.99963 * 359.97438 * 19 18 16 22 22 C 1.47852 * 110.99786 * 66.77485 * 13 2 1 23 23 H 1.08993 * 109.47580 * 306.47366 * 1 2 3 24 24 H 1.09004 * 109.47123 * 66.47850 * 1 2 3 25 25 H 1.09004 * 109.46985 * 186.47121 * 1 2 3 26 26 H 1.08996 * 109.47144 * 304.99857 * 4 2 1 27 27 H 1.09003 * 109.47025 * 64.99919 * 4 2 1 28 28 H 0.96999 * 119.99998 * 179.97438 * 8 7 5 29 29 H 1.09006 * 109.88573 * 242.65913 * 14 13 2 30 30 H 1.08993 * 109.89761 * 3.68979 * 14 13 2 31 31 H 1.09000 * 110.70851 * 140.67049 * 15 14 13 32 32 H 1.09008 * 110.70003 * 263.72169 * 15 14 13 33 33 H 0.97000 * 120.00354 * 87.16841 * 18 16 15 34 34 H 0.97002 * 119.99333 * 359.97438 * 20 19 18 35 35 H 0.97002 * 119.99883 * 179.97438 * 20 19 18 36 36 H 1.09006 * 110.37068 * 332.45966 * 22 13 2 37 37 H 1.08992 * 110.37267 * 94.69165 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3127 6 1 4.0789 -0.0855 0.5396 7 6 4.2303 -1.1927 2.3582 8 7 3.5762 -1.8362 3.3005 9 14 6.0920 -1.0603 2.4373 10 1 6.4697 0.1624 3.1906 11 1 6.6445 -2.2554 3.1242 12 1 6.6416 -0.9828 1.0600 13 7 2.0197 -0.6925 -1.1995 14 6 1.4343 -2.0415 -1.3067 15 6 0.7237 -2.1240 -2.6742 16 6 1.4293 -1.0153 -3.5039 17 1 2.3686 -1.3778 -3.9214 18 7 0.5501 -0.5059 -4.5592 19 6 0.5973 -1.0443 -5.7938 20 7 -0.2119 -0.5761 -6.7646 21 8 1.3698 -1.9525 -6.0318 22 6 1.6830 0.0655 -2.4234 23 1 -0.3634 0.6108 0.8263 24 1 -0.3633 0.4101 -0.9423 25 1 -0.3633 -1.0212 0.1158 26 1 1.6054 -0.2619 2.1369 27 1 1.7516 -1.7716 1.2055 28 1 4.0606 -2.2430 4.0359 29 1 2.2221 -2.7929 -1.2524 30 1 0.7157 -2.1990 -0.5026 31 1 0.8768 -3.1024 -3.1297 32 1 -0.3403 -1.9118 -2.5689 33 1 -0.0661 0.2188 -4.3694 34 1 -0.8285 0.1482 -6.5746 35 1 -0.1777 -0.9635 -7.6533 36 1 0.7846 0.6622 -2.2652 37 1 2.5161 0.7051 -2.7148 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593018880.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:28 Heat of formation + Delta-G solvation = -29.435475 kcal Electronic energy + Delta-G solvation = -17830.049029 eV Core-core repulsion = 15028.125442 eV Total energy + Delta-G solvation = -2801.923587 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.12067 -38.74015 -35.02320 -33.86849 -32.80503 -31.53542 -28.88779 -27.44126 -27.27126 -23.24222 -21.85840 -21.59105 -20.66500 -18.62039 -18.38830 -17.32701 -16.18045 -16.00635 -15.24069 -14.90954 -14.46325 -14.42008 -13.98581 -13.50680 -13.15107 -12.66992 -12.19531 -11.77303 -11.62396 -11.44191 -11.35564 -11.12350 -10.87075 -10.60579 -10.40932 -10.40087 -10.28056 -9.95109 -9.85731 -9.19837 -9.04587 -8.92015 -8.23656 -7.51348 -5.86468 -3.84352 2.79032 3.12748 3.41703 3.48035 3.53897 4.28915 4.58993 4.69973 4.85052 4.99688 5.31387 5.50035 5.52152 5.64086 5.77810 5.82641 5.87933 5.98947 6.07221 6.19864 6.30147 6.44518 6.48841 6.59652 6.64417 6.71544 6.78399 6.97307 7.50807 7.63334 7.83485 7.84614 8.00092 8.14204 8.52955 8.59827 9.21611 9.77648 11.25541 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.036820 B = 0.005241 C = 0.004913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.283236 B = 5341.009023 C = 5698.090065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.080 3.920 3 H 0.070 0.930 4 C 0.031 3.969 5 C -0.491 4.491 6 H 0.061 0.939 7 C 0.051 3.949 8 N -0.905 5.905 9 Si 0.889 3.111 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.273 1.273 13 N -0.496 5.496 14 C 0.046 3.954 15 C -0.152 4.152 16 C 0.152 3.848 17 H 0.105 0.895 18 N -0.734 5.734 19 C 0.705 3.295 20 N -0.871 5.871 21 O -0.593 6.593 22 C 0.033 3.967 23 H 0.055 0.945 24 H 0.040 0.960 25 H 0.054 0.946 26 H 0.018 0.982 27 H 0.019 0.981 28 H 0.257 0.743 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.394 0.606 34 H 0.395 0.605 35 H 0.413 0.587 36 H 0.046 0.954 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.559 4.766 -15.366 19.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.028 4.028 3 H 0.088 0.912 4 C -0.007 4.007 5 C -0.530 4.530 6 H 0.079 0.921 7 C -0.149 4.149 8 N -0.545 5.545 9 Si 0.718 3.282 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.198 1.198 13 N -0.219 5.219 14 C -0.082 4.082 15 C -0.192 4.192 16 C 0.046 3.954 17 H 0.123 0.877 18 N -0.389 5.389 19 C 0.403 3.597 20 N -0.439 5.439 21 O -0.471 6.471 22 C -0.096 4.096 23 H 0.074 0.926 24 H 0.059 0.941 25 H 0.073 0.927 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.067 0.933 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.228 0.772 34 H 0.222 0.778 35 H 0.245 0.755 36 H 0.064 0.936 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.239 3.858 -15.171 18.177 hybrid contribution -0.549 0.642 -0.086 0.849 sum -9.788 4.500 -15.257 18.677 Atomic orbital electron populations 1.22563 0.99763 1.01602 1.00381 1.22084 0.89978 0.98557 0.92180 0.91157 1.19182 0.96464 0.95345 0.89667 1.21174 0.91782 1.33008 1.06987 0.92101 1.25000 0.98045 0.95825 0.95984 1.69963 1.35243 1.36994 1.12341 0.86634 0.86371 0.77177 0.78047 1.21043 1.21569 1.19829 1.63783 1.56339 1.01310 1.00495 1.22763 0.97993 0.92651 0.94783 1.23258 0.99416 0.99683 0.96816 1.22105 0.93477 0.93941 0.85898 0.87657 1.45075 1.44022 1.40290 1.09484 1.15994 0.81023 0.81956 0.80762 1.43007 1.44383 1.42645 1.13895 1.90981 1.42206 1.32084 1.81786 1.23292 0.99977 0.95874 0.90479 0.92560 0.94082 0.92664 0.96338 0.96261 0.93338 0.90407 0.91672 0.90851 0.91889 0.77226 0.77750 0.75548 0.93560 0.90237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.98 8.56 37.16 0.32 -2.66 16 2 C 0.08 1.58 2.22 -67.71 -0.15 1.43 16 3 H 0.07 1.41 8.12 -51.93 -0.42 0.99 16 4 C 0.03 0.77 4.36 -27.88 -0.12 0.64 16 5 C -0.49 -13.77 8.84 -34.44 -0.30 -14.07 16 6 H 0.06 1.71 7.74 -52.48 -0.41 1.30 16 7 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 8 N -0.90 -27.34 13.29 55.43 0.74 -26.61 16 9 Si 0.89 22.21 29.54 -169.99 -5.02 17.19 16 10 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 13 N -0.50 -9.20 4.87 -223.29 -1.09 -10.29 16 14 C 0.05 0.81 5.57 -2.84 -0.02 0.79 16 15 C -0.15 -2.18 6.65 -24.75 -0.16 -2.35 16 16 C 0.15 2.11 3.43 -65.64 -0.23 1.88 16 17 H 0.11 1.71 7.54 -51.93 -0.39 1.32 16 18 N -0.73 -7.99 5.21 -56.44 -0.29 -8.28 16 19 C 0.70 8.67 8.84 -86.92 -0.77 7.91 16 20 N -0.87 -6.34 8.88 27.63 0.25 -6.09 16 21 O -0.59 -10.28 16.82 5.29 0.09 -10.19 16 22 C 0.03 0.48 6.11 -2.29 -0.01 0.46 16 23 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.04 0.56 6.19 -51.93 -0.32 0.24 16 25 H 0.05 0.90 6.25 -51.93 -0.32 0.58 16 26 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.02 0.51 6.76 -51.93 -0.35 0.16 16 28 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 30 H 0.07 1.17 4.82 -51.93 -0.25 0.92 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 33 H 0.39 3.08 8.58 -40.82 -0.35 2.73 16 34 H 0.40 1.58 8.84 -40.82 -0.36 1.22 16 35 H 0.41 2.60 8.93 -40.82 -0.36 2.24 16 36 H 0.05 0.60 5.80 -51.93 -0.30 0.30 16 37 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 296.70 15.07 4.47 4.47 Total: -1.00 -33.78 296.70 -7.92 -41.70 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -5.52 Total: 2.71 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -1.54 Total: -4.60 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: -0.40 Total: -51.27 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.09 Total: -10.19 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -33.78 -7.92 -41.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593018880.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.260 kcal (2) G-P(sol) polarization free energy of solvation -33.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds