Wall clock time and date at job start Thu Apr 9 2020 12:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08990 * 109.47046 * 2 1 4 4 C 1.53000 * 109.46940 * 120.00292 * 2 1 3 5 5 C 1.50701 * 109.46901 * 184.99924 * 4 2 1 6 6 H 1.08003 * 119.99761 * 0.02562 * 5 4 2 7 7 C 1.37870 * 119.99797 * 179.97438 * 5 4 2 8 8 N 1.31517 * 120.00354 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99875 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47167 * 89.99974 * 9 7 5 11 11 H 1.48500 * 109.47219 * 209.99869 * 9 7 5 12 12 H 1.48496 * 109.46884 * 329.99921 * 9 7 5 13 13 N 1.46907 * 109.46867 * 239.99948 * 2 1 3 14 14 C 1.47436 * 111.00054 * 305.92845 * 13 2 1 15 15 C 1.54323 * 107.23098 * 123.26363 * 14 13 2 16 16 C 1.55424 * 103.04999 * 22.27843 * 15 14 13 17 17 H 1.08999 * 111.00189 * 82.38865 * 16 15 14 18 18 N 1.46500 * 111.10871 * 206.30195 * 16 15 14 19 19 C 1.34772 * 119.99917 * 267.17449 * 18 16 15 20 20 N 1.34778 * 120.00364 * 179.97438 * 19 18 16 21 21 O 1.21586 * 119.99963 * 359.97438 * 19 18 16 22 22 C 1.47852 * 110.99786 * 66.77485 * 13 2 1 23 23 H 1.08993 * 109.47580 * 306.47366 * 1 2 3 24 24 H 1.09004 * 109.47123 * 66.47850 * 1 2 3 25 25 H 1.09004 * 109.46985 * 186.47121 * 1 2 3 26 26 H 1.08996 * 109.47144 * 304.99857 * 4 2 1 27 27 H 1.09003 * 109.47025 * 64.99919 * 4 2 1 28 28 H 0.96999 * 119.99998 * 179.97438 * 8 7 5 29 29 H 1.09006 * 109.88573 * 242.65913 * 14 13 2 30 30 H 1.08993 * 109.89761 * 3.68979 * 14 13 2 31 31 H 1.09000 * 110.70851 * 140.67049 * 15 14 13 32 32 H 1.09008 * 110.70003 * 263.72169 * 15 14 13 33 33 H 0.97000 * 120.00354 * 87.16841 * 18 16 15 34 34 H 0.97002 * 119.99333 * 359.97438 * 20 19 18 35 35 H 0.97002 * 119.99883 * 179.97438 * 20 19 18 36 36 H 1.09006 * 110.37068 * 332.45966 * 22 13 2 37 37 H 1.08992 * 110.37267 * 94.69165 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3127 6 1 4.0789 -0.0855 0.5396 7 6 4.2303 -1.1927 2.3582 8 7 3.5762 -1.8362 3.3005 9 14 6.0920 -1.0603 2.4373 10 1 6.4697 0.1624 3.1906 11 1 6.6445 -2.2554 3.1242 12 1 6.6416 -0.9828 1.0600 13 7 2.0197 -0.6925 -1.1995 14 6 1.4343 -2.0415 -1.3067 15 6 0.7237 -2.1240 -2.6742 16 6 1.4293 -1.0153 -3.5039 17 1 2.3686 -1.3778 -3.9214 18 7 0.5501 -0.5059 -4.5592 19 6 0.5973 -1.0443 -5.7938 20 7 -0.2119 -0.5761 -6.7646 21 8 1.3698 -1.9525 -6.0318 22 6 1.6830 0.0655 -2.4234 23 1 -0.3634 0.6108 0.8263 24 1 -0.3633 0.4101 -0.9423 25 1 -0.3633 -1.0212 0.1158 26 1 1.6054 -0.2619 2.1369 27 1 1.7516 -1.7716 1.2055 28 1 4.0606 -2.2430 4.0359 29 1 2.2221 -2.7929 -1.2524 30 1 0.7157 -2.1990 -0.5026 31 1 0.8768 -3.1024 -3.1297 32 1 -0.3403 -1.9118 -2.5689 33 1 -0.0661 0.2188 -4.3694 34 1 -0.8285 0.1482 -6.5746 35 1 -0.1777 -0.9635 -7.6533 36 1 0.7846 0.6622 -2.2652 37 1 2.5161 0.7051 -2.7148 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593018880.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:28 Heat of formation + Delta-G solvation = -57.519435 kcal Electronic energy + Delta-G solvation = -17831.266841 eV Core-core repulsion = 15028.125442 eV Total energy + Delta-G solvation = -2803.141399 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.20095 -40.00216 -36.38522 -34.99029 -34.45147 -32.98619 -30.29528 -29.09640 -28.66597 -25.13543 -23.22185 -22.78792 -21.75680 -20.10161 -19.31265 -18.35555 -18.22350 -17.21797 -16.51252 -16.40554 -15.99703 -15.51236 -15.17535 -14.83963 -14.54314 -14.38375 -13.67693 -13.44955 -13.25735 -12.99426 -12.70143 -12.60370 -12.45073 -12.36200 -12.29068 -11.71565 -11.61248 -11.45032 -11.10266 -11.01305 -10.70204 -10.46454 -9.96023 -8.91726 -8.08559 -6.13092 1.42421 1.44053 1.55386 1.89082 2.17272 2.48982 3.19727 3.30402 3.64853 3.68737 3.80501 4.11601 4.23359 4.38644 4.43725 4.48894 4.59865 4.67943 4.88986 4.99337 5.03116 5.07355 5.19932 5.29137 5.33480 5.48783 5.53928 5.73738 5.91853 5.92779 6.05580 6.30830 6.35608 6.54035 7.01351 7.13108 7.52994 7.68029 9.03365 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.036820 B = 0.005241 C = 0.004913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.283236 B = 5341.009023 C = 5698.090065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.090 3.910 3 H 0.068 0.932 4 C 0.035 3.965 5 C -0.501 4.501 6 H 0.057 0.943 7 C -0.005 4.005 8 N -0.940 5.940 9 Si 0.954 3.046 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.269 1.269 13 N -0.525 5.525 14 C 0.049 3.951 15 C -0.137 4.137 16 C 0.163 3.837 17 H 0.078 0.922 18 N -0.719 5.719 19 C 0.700 3.300 20 N -0.846 5.846 21 O -0.648 6.648 22 C 0.041 3.959 23 H 0.059 0.941 24 H 0.075 0.925 25 H 0.050 0.950 26 H -0.006 1.006 27 H -0.006 1.006 28 H 0.258 0.742 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.414 0.586 34 H 0.415 0.585 35 H 0.420 0.580 36 H 0.074 0.926 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.590 6.319 -17.018 21.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.019 4.019 3 H 0.087 0.913 4 C -0.002 4.002 5 C -0.539 4.539 6 H 0.076 0.924 7 C -0.201 4.201 8 N -0.583 5.583 9 Si 0.780 3.220 10 H -0.200 1.200 11 H -0.214 1.214 12 H -0.194 1.194 13 N -0.249 5.249 14 C -0.079 4.079 15 C -0.177 4.177 16 C 0.056 3.944 17 H 0.096 0.904 18 N -0.375 5.375 19 C 0.398 3.602 20 N -0.415 5.415 21 O -0.530 6.530 22 C -0.088 4.088 23 H 0.078 0.922 24 H 0.094 0.906 25 H 0.069 0.931 26 H 0.012 0.988 27 H 0.013 0.987 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.103 0.897 33 H 0.251 0.749 34 H 0.246 0.754 35 H 0.253 0.747 36 H 0.092 0.908 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.329 5.477 -16.853 20.511 hybrid contribution -0.250 0.171 0.401 0.502 sum -10.579 5.648 -16.452 20.359 Atomic orbital electron populations 1.22425 0.96655 1.01774 1.02402 1.21759 0.92420 0.97340 0.90354 0.91330 1.19050 0.95107 0.94318 0.91730 1.21530 0.93485 1.32336 1.06579 0.92429 1.25831 1.02748 0.95674 0.95802 1.70088 1.37027 1.38102 1.13043 0.85606 0.80818 0.77396 0.78151 1.19960 1.21373 1.19383 1.63570 1.57620 1.02058 1.01621 1.22627 0.97091 0.91710 0.96515 1.23122 1.00209 0.99710 0.94685 1.21711 0.92954 0.93544 0.86233 0.90390 1.44736 1.43745 1.40557 1.08469 1.16209 0.81020 0.81498 0.81509 1.42748 1.43196 1.42440 1.13103 1.90956 1.44654 1.34651 1.82714 1.23251 1.01249 0.95656 0.88596 0.92217 0.90648 0.93103 0.98790 0.98736 0.93320 0.93316 0.92464 0.91503 0.89676 0.74886 0.75396 0.74662 0.90765 0.90169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.24 8.56 71.98 0.62 -4.63 16 2 C 0.09 3.48 2.22 44.92 0.10 3.58 16 3 H 0.07 2.67 8.12 -2.39 -0.02 2.65 16 4 C 0.04 1.81 4.36 29.85 0.13 1.94 16 5 C -0.50 -28.60 8.84 25.60 0.23 -28.37 16 6 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 7 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 8 N -0.94 -58.14 13.29 21.45 0.28 -57.85 16 9 Si 0.95 46.08 29.54 68.60 2.03 48.11 16 10 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 11 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 12 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 13 N -0.52 -19.17 4.87 -860.34 -4.19 -23.36 16 14 C 0.05 1.71 5.57 86.65 0.48 2.20 16 15 C -0.14 -3.76 6.65 31.88 0.21 -3.55 16 16 C 0.16 4.25 3.43 46.48 0.16 4.41 16 17 H 0.08 2.52 7.54 -2.39 -0.02 2.51 16 18 N -0.72 -13.52 5.21 -450.74 -2.35 -15.87 16 19 C 0.70 15.67 8.84 179.06 1.58 17.25 16 20 N -0.85 -9.67 8.88 -184.75 -1.64 -11.31 16 21 O -0.65 -22.01 16.82 -3.99 -0.07 -22.08 16 22 C 0.04 1.09 6.11 86.77 0.53 1.62 16 23 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.07 1.75 6.19 -2.39 -0.01 1.74 16 25 H 0.05 1.58 6.25 -2.39 -0.01 1.57 16 26 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 27 H -0.01 -0.32 6.76 -2.39 -0.02 -0.33 16 28 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 29 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 30 H 0.06 2.08 4.82 -2.39 -0.01 2.07 16 31 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 33 H 0.41 4.64 8.58 -92.71 -0.80 3.84 16 34 H 0.41 1.63 8.84 -92.71 -0.82 0.81 16 35 H 0.42 4.13 8.93 -92.71 -0.83 3.30 16 36 H 0.07 1.59 5.80 -2.38 -0.01 1.57 16 37 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -75.29 296.70 -2.77 -78.07 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -1.34 Total: 9.66 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: 4.50 Total: -5.36 kcal Atomic # 7 Polarization: -100.50 SS G_CDS: -7.89 Total: -108.39 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -0.07 Total: -22.08 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -75.29 -2.77 -78.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593018880.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.546 kcal (2) G-P(sol) polarization free energy of solvation -75.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds