Wall clock time and date at job start Thu Apr 9 2020 12:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.46827 * 2 1 4 4 C 1.52990 * 109.47131 * 240.00011 * 2 1 3 5 5 C 1.50704 * 109.47614 * 64.55012 * 4 2 1 6 6 H 1.07997 * 119.99338 * 5.08116 * 5 4 2 7 7 C 1.37870 * 120.00268 * 185.07773 * 5 4 2 8 8 N 1.31519 * 120.00197 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00026 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46931 * 60.00037 * 9 7 5 11 11 H 1.48505 * 109.47297 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47267 * 299.99954 * 9 7 5 13 13 N 1.46904 * 109.47030 * 119.99676 * 2 1 3 14 14 C 1.47441 * 110.99574 * 183.80745 * 13 2 1 15 15 C 1.54318 * 107.23335 * 123.26142 * 14 13 2 16 16 C 1.55426 * 103.04835 * 22.27708 * 15 14 13 17 17 H 1.09001 * 111.00109 * 82.38754 * 16 15 14 18 18 N 1.46494 * 111.10900 * 206.29761 * 16 15 14 19 19 C 1.34776 * 120.00409 * 267.17449 * 18 16 15 20 20 N 1.34776 * 120.00601 * 179.97438 * 19 18 16 21 21 O 1.21593 * 119.99500 * 359.97438 * 19 18 16 22 22 C 1.47845 * 110.99968 * 304.64853 * 13 2 1 23 23 H 1.08999 * 109.46944 * 60.00083 * 1 2 3 24 24 H 1.08999 * 109.46700 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46838 * 300.00112 * 1 2 3 26 26 H 1.09006 * 109.47355 * 184.55267 * 4 2 1 27 27 H 1.09005 * 109.46963 * 304.54971 * 4 2 1 28 28 H 0.96993 * 120.00248 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.88507 * 242.66429 * 14 13 2 30 30 H 1.09001 * 109.89117 * 3.68744 * 14 13 2 31 31 H 1.08995 * 110.70854 * 140.66244 * 15 14 13 32 32 H 1.09000 * 110.70421 * 263.72134 * 15 14 13 33 33 H 0.96999 * 120.00303 * 87.17360 * 18 16 15 34 34 H 0.97001 * 119.99531 * 0.02562 * 20 19 18 35 35 H 0.96992 * 120.00386 * 179.97438 * 20 19 18 36 36 H 1.08997 * 110.37185 * 332.46449 * 22 13 2 37 37 H 1.08994 * 110.37436 * 94.69602 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6319 0.0512 -2.4771 6 1 1.1376 1.0060 -2.3749 7 6 1.8896 -0.4609 -3.7310 8 7 2.4912 -1.6237 -3.8555 9 14 1.3830 0.4963 -5.2531 10 1 2.0643 1.8158 -5.2574 11 1 1.7708 -0.2644 -6.4681 12 1 -0.0880 0.6987 -5.2437 13 7 2.0197 -0.6924 1.1995 14 6 3.4907 -0.6334 1.2801 15 6 3.8488 0.0157 2.6335 16 6 2.5748 -0.2309 3.4889 17 1 2.5806 -1.2326 3.9187 18 7 2.4365 0.7857 4.5347 19 6 2.9432 0.5619 5.7633 20 7 2.8164 1.4974 6.7253 21 8 3.5147 -0.4840 6.0040 22 6 1.4565 -0.0896 2.4263 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 3.1270 -0.7924 -1.2093 27 1 1.6116 -1.7227 -1.2908 28 1 2.6722 -1.9842 -4.7376 29 1 3.9055 -1.6402 1.2304 30 1 3.8831 -0.0302 0.4614 31 1 4.7134 -0.4755 3.0798 32 1 4.0338 1.0830 2.5121 33 1 1.9803 1.6200 4.3428 34 1 2.3602 2.3316 6.5334 35 1 3.1808 1.3361 7.6096 36 1 1.2223 0.9618 2.2594 37 1 0.5642 -0.6312 2.7401 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593018883.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:32 Heat of formation + Delta-G solvation = -36.792974 kcal Electronic energy + Delta-G solvation = -17579.951423 eV Core-core repulsion = 14777.708791 eV Total energy + Delta-G solvation = -2802.242632 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.12488 -38.61117 -35.06643 -33.92956 -33.00664 -31.70205 -28.95000 -27.92429 -26.56553 -23.50037 -21.69309 -21.44756 -20.64978 -19.00605 -18.39444 -17.36970 -16.53791 -15.73229 -15.29310 -15.02289 -14.57136 -14.35076 -13.54499 -13.49185 -13.20235 -13.19729 -12.09317 -11.95375 -11.66046 -11.42320 -11.27193 -10.96022 -10.85813 -10.77003 -10.50849 -10.39389 -10.31903 -9.90085 -9.88672 -9.25244 -9.11245 -9.04337 -8.33252 -7.72459 -5.98498 -4.00736 2.75159 3.08882 3.32792 3.37909 3.39405 4.23957 4.44083 4.62289 4.78693 4.93328 5.26544 5.37023 5.49448 5.58361 5.83022 5.93559 5.98829 6.08274 6.14790 6.28282 6.30720 6.39988 6.47678 6.62581 6.66660 6.73594 6.91080 7.11049 7.52192 7.52847 7.76438 7.81856 7.87931 8.09966 8.43959 8.49238 9.05702 9.62348 11.12780 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.055904 B = 0.004408 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.734315 B = 6350.943222 C = 6527.190232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.081 3.919 3 H 0.027 0.973 4 C 0.033 3.967 5 C -0.519 4.519 6 H 0.054 0.946 7 C 0.059 3.941 8 N -0.892 5.892 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.521 5.521 14 C 0.046 3.954 15 C -0.152 4.152 16 C 0.150 3.850 17 H 0.105 0.895 18 N -0.734 5.734 19 C 0.705 3.295 20 N -0.871 5.871 21 O -0.594 6.594 22 C 0.041 3.959 23 H 0.066 0.934 24 H 0.055 0.945 25 H 0.030 0.970 26 H 0.014 0.986 27 H 0.029 0.971 28 H 0.261 0.739 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.395 0.605 34 H 0.396 0.604 35 H 0.413 0.587 36 H 0.045 0.955 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.273 7.819 16.843 18.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.026 4.026 3 H 0.045 0.955 4 C -0.004 4.004 5 C -0.558 4.558 6 H 0.072 0.928 7 C -0.143 4.143 8 N -0.531 5.531 9 Si 0.718 3.282 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.246 5.246 14 C -0.082 4.082 15 C -0.192 4.192 16 C 0.044 3.956 17 H 0.123 0.877 18 N -0.389 5.389 19 C 0.403 3.597 20 N -0.439 5.439 21 O -0.472 6.472 22 C -0.088 4.088 23 H 0.085 0.915 24 H 0.074 0.926 25 H 0.049 0.951 26 H 0.032 0.968 27 H 0.047 0.953 28 H 0.071 0.929 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.229 0.771 34 H 0.223 0.777 35 H 0.245 0.755 36 H 0.063 0.937 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.919 6.209 16.679 17.821 hybrid contribution -0.259 2.173 -0.709 2.300 sum -1.178 8.382 15.970 18.075 Atomic orbital electron populations 1.21767 0.95306 1.01723 1.00074 1.22054 0.95034 0.95007 0.90490 0.95490 1.19139 0.96071 0.96274 0.88952 1.21141 1.38661 1.05067 0.90906 0.92827 1.24982 0.95309 0.94965 0.98996 1.69960 1.41894 1.17843 1.23445 0.86695 0.78992 0.79952 0.82557 1.20371 1.21306 1.20258 1.63724 1.05792 1.53606 1.01471 1.22754 0.88839 1.01188 0.95468 1.23242 0.98440 1.01055 0.96453 1.22118 0.94980 0.92255 0.86215 0.87668 1.45062 1.61916 1.21631 1.10288 1.15986 0.79291 0.83690 0.80707 1.42999 1.65432 1.20699 1.14736 1.90977 1.48405 1.26339 1.81444 1.23191 0.97181 0.98219 0.90250 0.91473 0.92581 0.95143 0.96759 0.95303 0.92947 0.90521 0.91563 0.90682 0.91656 0.77105 0.77691 0.75520 0.93686 0.90151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 8.81 37.16 0.33 -2.13 16 2 C 0.08 1.66 1.65 -67.71 -0.11 1.55 16 3 H 0.03 0.56 8.13 -51.93 -0.42 0.14 16 4 C 0.03 0.84 4.45 -27.89 -0.12 0.72 16 5 C -0.52 -14.30 8.30 -34.44 -0.29 -14.59 16 6 H 0.05 1.43 7.22 -52.49 -0.38 1.05 16 7 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 8 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 9 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 N -0.52 -9.29 5.03 -223.30 -1.12 -10.42 16 14 C 0.05 0.77 6.10 -2.84 -0.02 0.75 16 15 C -0.15 -2.13 6.65 -24.75 -0.16 -2.30 16 16 C 0.15 2.00 3.43 -65.64 -0.23 1.78 16 17 H 0.11 1.60 7.54 -51.93 -0.39 1.21 16 18 N -0.73 -7.80 5.21 -56.44 -0.29 -8.09 16 19 C 0.71 8.43 8.84 -86.92 -0.77 7.66 16 20 N -0.87 -6.13 8.88 27.63 0.25 -5.88 16 21 O -0.59 -9.99 16.82 5.28 0.09 -9.90 16 22 C 0.04 0.57 4.97 -2.30 -0.01 0.56 16 23 H 0.07 1.33 7.03 -51.93 -0.36 0.96 16 24 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.03 0.47 6.81 -51.93 -0.35 0.12 16 26 H 0.01 0.38 6.63 -51.93 -0.34 0.04 16 27 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 30 H 0.07 1.22 6.62 -51.93 -0.34 0.87 16 31 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.40 3.06 8.58 -40.82 -0.35 2.71 16 34 H 0.40 1.52 8.84 -40.82 -0.36 1.16 16 35 H 0.41 2.49 8.93 -40.82 -0.36 2.13 16 36 H 0.04 0.59 7.26 -51.93 -0.38 0.22 16 37 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 299.49 15.07 4.51 4.51 Total: -1.00 -33.10 299.49 -8.06 -41.16 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -5.72 Total: 2.59 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -1.48 Total: -4.42 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: -0.44 Total: -50.32 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.09 Total: -9.90 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -33.10 -8.06 -41.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593018883.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.363 kcal (2) G-P(sol) polarization free energy of solvation -33.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds