Wall clock time and date at job start Thu Apr 9 2020 12:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42908 * 113.99911 * 2 1 4 4 C 1.53001 * 109.46991 * 180.02562 * 3 2 1 5 5 N 1.46500 * 115.54960 * 29.63526 * 4 3 2 6 6 C 1.46502 * 119.99868 * 246.41070 * 5 4 3 7 7 C 1.34775 * 120.00276 * 66.41673 * 5 4 3 8 8 O 1.21287 * 119.99716 * 5.40319 * 7 5 4 9 9 C 1.50692 * 120.00351 * 185.39865 * 7 5 4 10 10 C 1.52995 * 109.47396 * 180.02562 * 9 7 5 11 11 C 1.50700 * 109.47120 * 180.02562 * 10 9 7 12 12 H 1.08001 * 120.00222 * 359.97438 * 11 10 9 13 13 C 1.37884 * 120.00088 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99637 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00136 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47119 * 89.99837 * 15 13 11 17 17 H 1.48497 * 109.47003 * 209.99667 * 15 13 11 18 18 H 1.48497 * 109.46962 * 329.99844 * 15 13 11 19 19 C 1.52999 * 117.49755 * 243.92475 * 4 3 2 20 20 C 1.52996 * 60.00121 * 252.51339 * 19 4 3 21 21 H 1.08993 * 109.46541 * 180.02562 * 1 2 3 22 22 H 1.08995 * 109.46678 * 60.00311 * 1 2 3 23 23 H 1.08995 * 109.46877 * 299.99818 * 1 2 3 24 24 H 1.09003 * 109.46779 * 300.00269 * 3 2 1 25 25 H 1.08994 * 109.47004 * 60.00057 * 3 2 1 26 26 H 1.09003 * 109.46506 * 90.00081 * 6 5 4 27 27 H 1.08991 * 109.47243 * 210.00452 * 6 5 4 28 28 H 1.09002 * 109.47337 * 330.00696 * 6 5 4 29 29 H 1.09002 * 109.47150 * 300.00138 * 9 7 5 30 30 H 1.08999 * 109.46791 * 59.99636 * 9 7 5 31 31 H 1.09002 * 109.46915 * 300.00074 * 10 9 7 32 32 H 1.08999 * 109.47617 * 59.99935 * 10 9 7 33 33 H 0.96998 * 120.00112 * 179.97438 * 14 13 11 34 34 H 1.09007 * 117.49642 * 0.02562 * 19 4 3 35 35 H 1.08996 * 117.50113 * 145.02160 * 19 4 3 36 36 H 1.08997 * 117.49841 * 252.51065 * 20 19 4 37 37 H 1.09005 * 117.52082 * 107.48188 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 4.0744 -0.0103 -0.6547 6 6 4.7705 -1.0276 0.1370 7 6 3.9298 -0.1738 -1.9846 8 8 3.4416 0.7113 -2.6549 9 6 4.3748 -1.4562 -2.6389 10 6 4.1014 -1.3833 -4.1425 11 6 4.5459 -2.6661 -4.7967 12 1 4.9804 -3.4544 -4.1998 13 6 4.3989 -2.8330 -6.1575 14 7 3.8703 -1.8729 -6.8844 15 14 4.9505 -4.4228 -6.9685 16 1 3.8238 -5.3901 -6.9789 17 1 5.3770 -4.1447 -8.3635 18 1 6.0892 -4.9973 -6.2079 19 6 4.2873 1.7234 1.2182 20 6 4.3464 2.4774 -0.1118 21 1 -0.3632 -1.0276 0.0005 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 1.6885 1.8464 -0.8900 25 1 1.6886 1.8464 0.8899 26 1 4.0522 -1.7675 0.4902 27 1 5.5225 -1.5175 -0.4814 28 1 5.2547 -0.5546 0.9914 29 1 5.4423 -1.5986 -2.4706 30 1 3.8245 -2.2933 -2.2093 31 1 3.0340 -1.2407 -4.3112 32 1 4.6521 -0.5463 -4.5718 33 1 3.7672 -1.9901 -7.8417 34 1 3.6952 2.1635 2.0207 35 1 5.1831 1.1886 1.5338 36 1 5.2811 2.4386 -0.6712 37 1 3.7934 3.4138 -0.1849 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597941489.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:44 Heat of formation + Delta-G solvation = -79.213585 kcal Electronic energy + Delta-G solvation = -17850.570802 eV Core-core repulsion = 15014.195923 eV Total energy + Delta-G solvation = -2836.374879 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.16511 -39.05326 -37.79115 -35.59032 -34.94680 -32.76737 -29.31883 -27.93202 -27.47007 -26.35868 -24.22946 -23.30352 -21.61150 -19.53288 -18.69035 -17.99766 -17.24886 -17.15754 -16.77914 -16.47687 -16.33552 -15.89795 -15.12505 -14.70323 -14.38235 -14.17825 -13.72095 -13.56137 -13.37702 -13.22292 -13.03724 -12.81660 -12.48426 -12.36009 -12.27722 -11.93287 -11.69248 -11.60522 -11.30664 -11.22543 -10.73649 -10.57275 -10.37899 -9.52286 -8.18252 -6.32782 1.41427 1.44902 1.55888 1.75763 2.01910 2.43154 2.59512 2.82774 3.14379 3.80307 3.81774 3.92027 4.09597 4.24018 4.34040 4.42144 4.45186 4.47795 4.48929 4.55471 4.65131 4.73272 4.78186 4.82031 4.92201 4.99545 5.08873 5.17259 5.47492 5.61734 5.74818 5.84565 6.17220 6.20744 6.48484 6.85344 7.35733 7.38575 8.94747 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.031332 B = 0.005467 C = 0.005206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.434376 B = 5120.670842 C = 5377.031796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.405 6.405 3 C 0.095 3.905 4 C 0.068 3.932 5 N -0.579 5.579 6 C 0.075 3.925 7 C 0.514 3.486 8 O -0.584 6.584 9 C -0.113 4.113 10 C 0.047 3.953 11 C -0.543 4.543 12 H 0.075 0.925 13 C -0.007 4.007 14 N -0.939 5.939 15 Si 0.976 3.024 16 H -0.271 1.271 17 H -0.285 1.285 18 H -0.254 1.254 19 C -0.130 4.130 20 C -0.176 4.176 21 H 0.092 0.908 22 H 0.029 0.971 23 H 0.066 0.934 24 H 0.029 0.971 25 H 0.090 0.910 26 H 0.061 0.939 27 H 0.078 0.922 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.094 0.906 31 H -0.022 1.022 32 H -0.019 1.019 33 H 0.263 0.737 34 H 0.133 0.867 35 H 0.118 0.882 36 H 0.085 0.915 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.383 4.263 21.230 21.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.324 6.324 3 C 0.018 3.982 4 C -0.019 4.019 5 N -0.311 5.311 6 C -0.066 4.066 7 C 0.305 3.695 8 O -0.463 6.463 9 C -0.153 4.153 10 C 0.009 3.991 11 C -0.581 4.581 12 H 0.093 0.907 13 C -0.204 4.204 14 N -0.579 5.579 15 Si 0.800 3.200 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.178 1.178 19 C -0.167 4.167 20 C -0.214 4.214 21 H 0.111 0.889 22 H 0.048 0.952 23 H 0.085 0.915 24 H 0.047 0.953 25 H 0.108 0.892 26 H 0.080 0.920 27 H 0.097 0.903 28 H 0.116 0.884 29 H 0.119 0.881 30 H 0.112 0.888 31 H -0.004 1.004 32 H 0.000 1.000 33 H 0.072 0.928 34 H 0.151 0.849 35 H 0.137 0.863 36 H 0.103 0.897 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.564 4.582 20.733 21.241 hybrid contribution -0.313 -0.202 -1.195 1.252 sum -0.877 4.380 19.538 20.042 Atomic orbital electron populations 1.22871 0.79848 1.03578 1.00466 1.87871 1.21025 1.28024 1.95468 1.22253 0.90606 0.84947 1.00417 1.20850 0.90734 0.87515 1.02759 1.47194 1.56655 1.21276 1.05976 1.22034 0.96934 0.90932 0.96710 1.21248 0.77236 0.89141 0.81921 1.90601 1.46458 1.45097 1.64176 1.21614 1.02808 0.94106 0.96782 1.18651 0.94404 0.95519 0.90521 1.21701 1.41000 1.01859 0.93541 0.90692 1.26166 0.95120 1.00776 0.98363 1.70189 1.45773 1.35254 1.06665 0.85288 0.79069 0.78324 0.77358 1.19670 1.21019 1.17802 1.23597 1.02188 1.00307 0.90560 1.23358 1.01532 0.95362 1.01122 0.88913 0.95235 0.91531 0.95255 0.89238 0.92024 0.90333 0.88351 0.88108 0.88774 1.00407 1.00024 0.92830 0.84921 0.86342 0.89691 0.87141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 11.01 113.37 1.25 1.92 16 2 O -0.40 -12.54 10.21 -148.98 -1.52 -14.06 16 3 C 0.10 2.63 5.74 71.98 0.41 3.05 16 4 C 0.07 1.83 1.79 3.60 0.01 1.84 16 5 N -0.58 -18.47 2.58 -799.39 -2.06 -20.53 16 6 C 0.08 1.68 10.12 127.77 1.29 2.98 16 7 C 0.51 22.28 7.49 87.65 0.66 22.94 16 8 O -0.58 -30.80 15.75 -3.05 -0.05 -30.84 16 9 C -0.11 -5.03 4.32 29.84 0.13 -4.90 16 10 C 0.05 2.75 4.26 29.85 0.13 2.88 16 11 C -0.54 -32.12 9.11 25.60 0.23 -31.88 16 12 H 0.07 4.04 7.74 -2.91 -0.02 4.02 16 13 C -0.01 -0.42 5.46 84.66 0.46 0.04 16 14 N -0.94 -61.12 13.29 21.45 0.28 -60.83 16 15 Si 0.98 45.27 29.54 68.60 2.03 47.30 16 16 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 17 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 18 H -0.25 -10.92 7.11 99.48 0.71 -10.21 16 19 C -0.13 -2.13 9.48 30.59 0.29 -1.84 16 20 C -0.18 -4.13 10.18 30.59 0.31 -3.82 16 21 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 22 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 23 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.09 1.73 7.88 -2.39 -0.02 1.71 16 26 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.08 1.70 6.48 -2.39 -0.02 1.69 16 28 H 0.10 1.52 5.98 -2.39 -0.01 1.50 16 29 H 0.10 3.92 7.24 -2.39 -0.02 3.90 16 30 H 0.09 3.85 8.14 -2.39 -0.02 3.84 16 31 H -0.02 -1.51 8.10 -2.39 -0.02 -1.52 16 32 H -0.02 -1.23 8.10 -2.39 -0.02 -1.25 16 33 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 34 H 0.13 1.43 8.03 -2.38 -0.02 1.41 16 35 H 0.12 1.58 6.48 -2.39 -0.02 1.56 16 36 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.11 2.30 8.14 -2.38 -0.02 2.28 16 Total: -1.00 -81.88 311.12 4.88 -76.99 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: 1.03 Total: 8.77 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: 5.17 Total: -6.79 kcal Atomic # 7 Polarization: -79.58 SS G_CDS: -1.78 Total: -81.36 kcal Atomic # 8 Polarization: -43.34 SS G_CDS: -1.57 Total: -44.91 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -81.88 4.88 -76.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597941489.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.221 kcal (2) G-P(sol) polarization free energy of solvation -81.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds