Wall clock time and date at job start Thu Apr 9 2020 12:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 113.99700 * 2 1 4 4 H 1.09001 * 109.47218 * 5.01571 * 3 2 1 5 5 C 1.53008 * 109.46457 * 245.02036 * 3 2 1 6 6 N 1.46494 * 109.47014 * 59.06587 * 5 3 2 7 7 C 1.34774 * 119.99927 * 176.69287 * 6 5 3 8 8 O 1.21691 * 120.00251 * 0.02562 * 7 6 5 9 9 C 1.46374 * 120.00179 * 179.97438 * 7 6 5 10 10 H 1.07998 * 120.00047 * 359.97438 * 9 7 6 11 11 C 1.40054 * 120.00129 * 180.02562 * 9 7 6 12 12 N 1.30676 * 119.99910 * 0.02562 * 11 9 7 13 13 Si 1.86796 * 120.00067 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47365 * 90.00055 * 13 11 9 15 15 H 1.48500 * 109.47206 * 209.99959 * 13 11 9 16 16 H 1.48500 * 109.47370 * 329.99841 * 13 11 9 17 17 C 1.52995 * 109.47491 * 125.02346 * 3 2 1 18 18 C 1.54274 * 110.03334 * 57.90239 * 17 3 2 19 19 C 1.54968 * 104.16134 * 217.14108 * 18 17 3 20 20 C 1.54893 * 102.77569 * 37.88638 * 19 18 17 21 21 C 1.53879 * 110.03232 * 300.68863 * 17 3 2 22 22 H 1.09003 * 109.47336 * 53.74062 * 1 2 3 23 23 H 1.09002 * 109.47264 * 173.74173 * 1 2 3 24 24 H 1.09003 * 109.47351 * 293.74098 * 1 2 3 25 25 H 1.09004 * 109.46568 * 179.05924 * 5 3 2 26 26 H 1.08998 * 109.47279 * 299.05917 * 5 3 2 27 27 H 0.96997 * 120.00178 * 356.68874 * 6 5 3 28 28 H 0.96998 * 119.99757 * 180.02562 * 12 11 9 29 29 H 1.08995 * 110.01703 * 179.29515 * 17 3 2 30 30 H 1.09000 * 110.48505 * 335.78767 * 18 17 3 31 31 H 1.08997 * 110.48561 * 98.43088 * 18 17 3 32 32 H 1.08998 * 110.71331 * 279.57500 * 19 18 17 33 33 H 1.08993 * 110.92137 * 156.29453 * 19 18 17 34 34 H 1.09000 * 110.48241 * 203.41013 * 20 19 18 35 35 H 1.08993 * 110.59751 * 80.82235 * 20 19 18 36 36 H 1.08995 * 110.03104 * 238.56988 * 21 17 3 37 37 H 1.09008 * 110.02879 * 359.94963 * 21 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.2227 2.0538 0.0898 5 6 2.7741 1.5235 -1.3077 6 7 1.8558 1.3777 -2.4398 7 6 2.2947 1.5935 -3.6956 8 8 3.4540 1.9091 -3.8892 9 6 1.3774 1.4472 -4.8268 10 1 0.3490 1.1659 -4.6552 11 6 1.8337 1.6710 -6.1319 12 7 3.0785 2.0099 -6.3397 13 14 0.6629 1.4850 -7.5755 14 1 0.0030 2.7870 -7.8486 15 1 1.4223 1.0535 -8.7764 16 1 -0.3675 0.4667 -7.2492 17 6 2.9739 1.4348 1.1812 18 6 4.0647 0.3473 1.0948 19 6 4.3060 -0.0655 2.5689 20 6 2.8811 -0.0219 3.1745 21 6 2.2219 1.2005 2.5031 22 1 -0.3634 0.6078 -0.8287 23 1 -0.3634 -1.0215 -0.1120 24 1 -0.3634 0.4137 0.9407 25 1 3.2034 2.5255 -1.3149 26 1 3.5721 0.7857 -1.3897 27 1 0.9319 1.1257 -2.2855 28 1 3.3944 2.1653 -7.2436 29 1 3.4319 2.4239 1.1825 30 1 3.7096 -0.5038 0.5137 31 1 4.9762 0.7552 0.6580 32 1 4.9597 0.6501 3.0676 33 1 4.7204 -1.0718 2.6284 34 1 2.9297 0.1162 4.2546 35 1 2.3332 -0.9323 2.9316 36 1 2.3157 2.0755 3.1462 37 1 1.1701 0.9956 2.3031 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598396231.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:48 Heat of formation + Delta-G solvation = -107.107321 kcal Electronic energy + Delta-G solvation = -17846.925180 eV Core-core repulsion = 15009.340738 eV Total energy + Delta-G solvation = -2837.584442 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.35038 -37.09969 -36.40987 -33.25345 -32.24231 -30.56375 -28.67106 -27.10502 -26.42679 -25.16509 -22.11247 -20.55917 -19.73732 -19.30470 -17.32506 -16.34874 -15.89291 -15.40690 -15.24750 -14.70310 -14.12025 -13.80416 -13.75595 -13.29662 -13.15366 -12.70378 -12.34145 -11.89430 -11.54799 -11.25900 -11.16128 -11.06833 -10.94530 -10.85343 -10.83417 -10.53136 -10.44336 -10.40444 -10.22236 -10.18775 -9.22504 -8.81705 -7.56420 -7.42118 -6.14601 -4.59904 3.16026 3.22611 3.26248 3.96637 4.13119 4.56824 4.63830 4.69535 4.78377 5.00909 5.24778 5.36911 5.43991 5.49461 5.53987 5.62951 5.74310 5.75253 5.77401 5.80225 5.85099 5.92581 5.99208 6.04287 6.16506 6.33987 6.38378 6.42756 6.58973 6.62855 7.45422 7.46654 7.97770 8.15820 8.37174 9.06208 9.59243 10.64707 10.83774 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.044675 B = 0.005140 C = 0.004781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.592856 B = 5446.240670 C = 5854.972065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.372 6.372 3 C 0.086 3.914 4 H 0.062 0.938 5 C 0.123 3.877 6 N -0.764 5.764 7 C 0.555 3.445 8 O -0.582 6.582 9 C -0.546 4.546 10 H 0.066 0.934 11 C 0.088 3.912 12 N -0.769 5.769 13 Si 0.907 3.093 14 H -0.272 1.272 15 H -0.279 1.279 16 H -0.265 1.265 17 C -0.097 4.097 18 C -0.116 4.116 19 C -0.124 4.124 20 C -0.119 4.119 21 C -0.115 4.115 22 H 0.043 0.957 23 H 0.082 0.918 24 H 0.035 0.965 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.377 0.623 28 H 0.268 0.732 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.025 -2.683 15.960 16.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.291 6.291 3 C 0.028 3.972 4 H 0.080 0.920 5 C -0.003 4.003 6 N -0.420 5.420 7 C 0.358 3.642 8 O -0.465 6.465 9 C -0.583 4.583 10 H 0.084 0.916 11 C -0.132 4.132 12 N -0.398 5.398 13 Si 0.732 3.268 14 H -0.198 1.198 15 H -0.205 1.205 16 H -0.189 1.189 17 C -0.116 4.116 18 C -0.153 4.153 19 C -0.161 4.161 20 C -0.157 4.157 21 C -0.152 4.152 22 H 0.062 0.938 23 H 0.100 0.900 24 H 0.053 0.947 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.208 0.792 28 H 0.078 0.922 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.888 -2.561 15.680 16.149 hybrid contribution -1.277 0.065 -0.646 1.432 sum -4.165 -2.496 15.034 15.799 Atomic orbital electron populations 1.22843 0.81812 1.02538 0.99426 1.87928 1.18802 1.27424 1.94900 1.22455 0.95323 0.84829 0.94622 0.91974 1.21269 0.93534 1.00560 0.84914 1.46051 1.12247 1.77559 1.06138 1.18210 0.88175 0.76920 0.80852 1.90593 1.19398 1.52207 1.84281 1.20878 0.96964 1.50255 0.90231 0.91594 1.25703 0.95007 0.92776 0.99692 1.70028 1.14831 1.33325 1.21578 0.86386 0.80729 0.79084 0.80608 1.19787 1.20457 1.18949 1.22029 0.95937 0.99900 0.93740 1.22378 0.97727 0.98934 0.96306 1.22489 0.96563 1.00824 0.96271 1.22286 0.96237 0.98461 0.98683 1.22116 0.99620 0.97851 0.95659 0.93826 0.89961 0.94670 0.92526 0.92626 0.79186 0.92166 0.90137 0.90211 0.91749 0.92024 0.91928 0.92457 0.91587 0.92327 0.91963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.28 101.05 1.04 1.41 16 2 O -0.37 -5.68 8.60 -35.23 -0.30 -5.99 16 3 C 0.09 1.30 1.90 -26.73 -0.05 1.25 16 4 H 0.06 0.88 7.61 -51.93 -0.40 0.49 16 5 C 0.12 2.46 5.18 -4.04 -0.02 2.44 16 6 N -0.76 -17.84 5.45 -61.72 -0.34 -18.18 16 7 C 0.55 16.31 7.75 -12.99 -0.10 16.21 16 8 O -0.58 -19.40 15.02 5.20 0.08 -19.32 16 9 C -0.55 -15.82 9.54 -35.63 -0.34 -16.16 16 10 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 11 C 0.09 2.50 5.50 -17.36 -0.10 2.40 16 12 N -0.77 -23.52 11.83 55.55 0.66 -22.86 16 13 Si 0.91 20.44 29.56 -169.99 -5.02 15.41 16 14 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 15 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 16 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 17 C -0.10 -1.25 2.83 -89.50 -0.25 -1.51 16 18 C -0.12 -1.54 5.19 -25.03 -0.13 -1.67 16 19 C -0.12 -1.35 6.91 -24.69 -0.17 -1.52 16 20 C -0.12 -1.24 6.83 -25.07 -0.17 -1.41 16 21 C -0.11 -1.26 6.22 -25.61 -0.16 -1.42 16 22 H 0.04 0.55 6.83 -51.93 -0.35 0.19 16 23 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.03 0.36 7.24 -51.93 -0.38 -0.01 16 25 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.06 1.20 7.19 -51.93 -0.37 0.83 16 27 H 0.38 7.83 6.73 -40.82 -0.27 7.55 16 28 H 0.27 7.41 8.29 -40.82 -0.34 7.07 16 29 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.08 1.21 7.03 -51.93 -0.37 0.84 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.69 6.32 -51.92 -0.33 0.36 16 LS Contribution 298.26 15.07 4.49 4.49 Total: -1.00 -34.52 298.26 -6.71 -41.23 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -5.82 Total: 5.17 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -0.45 Total: 0.03 kcal Atomic # 7 Polarization: -41.36 SS G_CDS: 0.32 Total: -41.04 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.22 Total: -25.30 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -34.52 -6.71 -41.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598396231.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.879 kcal (2) G-P(sol) polarization free energy of solvation -34.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds