Wall clock time and date at job start Thu Apr 9 2020 12:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 113.99700 * 2 1 4 4 H 1.09001 * 109.47218 * 5.01571 * 3 2 1 5 5 C 1.53008 * 109.46457 * 245.02036 * 3 2 1 6 6 N 1.46494 * 109.47014 * 59.06587 * 5 3 2 7 7 C 1.34774 * 119.99927 * 176.69287 * 6 5 3 8 8 O 1.21691 * 120.00251 * 0.02562 * 7 6 5 9 9 C 1.46374 * 120.00179 * 179.97438 * 7 6 5 10 10 H 1.07998 * 120.00047 * 359.97438 * 9 7 6 11 11 C 1.40054 * 120.00129 * 180.02562 * 9 7 6 12 12 N 1.30676 * 119.99910 * 0.02562 * 11 9 7 13 13 Si 1.86796 * 120.00067 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47365 * 90.00055 * 13 11 9 15 15 H 1.48500 * 109.47206 * 209.99959 * 13 11 9 16 16 H 1.48500 * 109.47370 * 329.99841 * 13 11 9 17 17 C 1.52995 * 109.47491 * 125.02346 * 3 2 1 18 18 C 1.54274 * 110.03334 * 57.90239 * 17 3 2 19 19 C 1.54968 * 104.16134 * 217.14108 * 18 17 3 20 20 C 1.54893 * 102.77569 * 37.88638 * 19 18 17 21 21 C 1.53879 * 110.03232 * 300.68863 * 17 3 2 22 22 H 1.09003 * 109.47336 * 53.74062 * 1 2 3 23 23 H 1.09002 * 109.47264 * 173.74173 * 1 2 3 24 24 H 1.09003 * 109.47351 * 293.74098 * 1 2 3 25 25 H 1.09004 * 109.46568 * 179.05924 * 5 3 2 26 26 H 1.08998 * 109.47279 * 299.05917 * 5 3 2 27 27 H 0.96997 * 120.00178 * 356.68874 * 6 5 3 28 28 H 0.96998 * 119.99757 * 180.02562 * 12 11 9 29 29 H 1.08995 * 110.01703 * 179.29515 * 17 3 2 30 30 H 1.09000 * 110.48505 * 335.78767 * 18 17 3 31 31 H 1.08997 * 110.48561 * 98.43088 * 18 17 3 32 32 H 1.08998 * 110.71331 * 279.57500 * 19 18 17 33 33 H 1.08993 * 110.92137 * 156.29453 * 19 18 17 34 34 H 1.09000 * 110.48241 * 203.41013 * 20 19 18 35 35 H 1.08993 * 110.59751 * 80.82235 * 20 19 18 36 36 H 1.08995 * 110.03104 * 238.56988 * 21 17 3 37 37 H 1.09008 * 110.02879 * 359.94963 * 21 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.2227 2.0538 0.0898 5 6 2.7741 1.5235 -1.3077 6 7 1.8558 1.3777 -2.4398 7 6 2.2947 1.5935 -3.6956 8 8 3.4540 1.9091 -3.8892 9 6 1.3774 1.4472 -4.8268 10 1 0.3490 1.1659 -4.6552 11 6 1.8337 1.6710 -6.1319 12 7 3.0785 2.0099 -6.3397 13 14 0.6629 1.4850 -7.5755 14 1 0.0030 2.7870 -7.8486 15 1 1.4223 1.0535 -8.7764 16 1 -0.3675 0.4667 -7.2492 17 6 2.9739 1.4348 1.1812 18 6 4.0647 0.3473 1.0948 19 6 4.3060 -0.0655 2.5689 20 6 2.8811 -0.0219 3.1745 21 6 2.2219 1.2005 2.5031 22 1 -0.3634 0.6078 -0.8287 23 1 -0.3634 -1.0215 -0.1120 24 1 -0.3634 0.4137 0.9407 25 1 3.2034 2.5255 -1.3149 26 1 3.5721 0.7857 -1.3897 27 1 0.9319 1.1257 -2.2855 28 1 3.3944 2.1653 -7.2436 29 1 3.4319 2.4239 1.1825 30 1 3.7096 -0.5038 0.5137 31 1 4.9762 0.7552 0.6580 32 1 4.9597 0.6501 3.0676 33 1 4.7204 -1.0718 2.6284 34 1 2.9297 0.1162 4.2546 35 1 2.3332 -0.9323 2.9316 36 1 2.3157 2.0755 3.1462 37 1 1.1701 0.9956 2.3031 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598396231.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:48 Heat of formation + Delta-G solvation = -131.811727 kcal Electronic energy + Delta-G solvation = -17847.996444 eV Core-core repulsion = 15009.340738 eV Total energy + Delta-G solvation = -2838.655706 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.57615 -39.08721 -37.56979 -35.17077 -34.40357 -31.95300 -29.62380 -28.90273 -27.58453 -26.77184 -23.50482 -21.87403 -21.31404 -20.51736 -19.29502 -17.62481 -17.47513 -16.86521 -16.73361 -16.01965 -15.67050 -15.32656 -15.28181 -14.84080 -14.30113 -14.07800 -13.86215 -13.48087 -13.09671 -13.03450 -12.72054 -12.65119 -12.30860 -12.06226 -11.99523 -11.84880 -11.81764 -11.51477 -11.39831 -11.33104 -10.94060 -10.44686 -9.87086 -9.49740 -8.30205 -6.87525 1.39438 1.41559 1.56940 2.24272 2.45803 2.83131 3.05415 3.61043 3.64320 3.81081 3.87661 4.10127 4.11782 4.43964 4.51319 4.59365 4.63409 4.66615 4.72703 4.76718 4.84774 4.89200 4.97298 5.00054 5.06963 5.14503 5.28815 5.30077 5.39287 5.50758 5.57293 5.85037 6.19933 6.24532 6.32558 6.84931 7.51971 8.47412 8.66142 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.044675 B = 0.005140 C = 0.004781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.592856 B = 5446.240670 C = 5854.972065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.389 6.389 3 C 0.100 3.900 4 H 0.078 0.922 5 C 0.123 3.877 6 N -0.751 5.751 7 C 0.535 3.465 8 O -0.634 6.634 9 C -0.574 4.574 10 H 0.087 0.913 11 C 0.028 3.972 12 N -0.823 5.823 13 Si 1.001 2.999 14 H -0.259 1.259 15 H -0.273 1.273 16 H -0.249 1.249 17 C -0.097 4.097 18 C -0.121 4.121 19 C -0.119 4.119 20 C -0.116 4.116 21 C -0.110 4.110 22 H 0.038 0.962 23 H 0.095 0.905 24 H 0.060 0.940 25 H 0.043 0.957 26 H 0.032 0.968 27 H 0.391 0.609 28 H 0.275 0.725 29 H 0.085 0.915 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.243 -2.936 16.918 18.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.308 6.308 3 C 0.042 3.958 4 H 0.096 0.904 5 C -0.002 4.002 6 N -0.406 5.406 7 C 0.339 3.661 8 O -0.522 6.522 9 C -0.611 4.611 10 H 0.105 0.895 11 C -0.187 4.187 12 N -0.452 5.452 13 Si 0.820 3.180 14 H -0.184 1.184 15 H -0.197 1.197 16 H -0.172 1.172 17 C -0.116 4.116 18 C -0.158 4.158 19 C -0.157 4.157 20 C -0.153 4.153 21 C -0.147 4.147 22 H 0.057 0.943 23 H 0.113 0.887 24 H 0.079 0.921 25 H 0.061 0.939 26 H 0.050 0.950 27 H 0.225 0.775 28 H 0.085 0.915 29 H 0.104 0.896 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.150 -2.831 16.701 17.705 hybrid contribution -0.562 0.122 -0.908 1.075 sum -5.712 -2.710 15.793 17.011 Atomic orbital electron populations 1.23062 0.80111 1.03589 1.00580 1.87921 1.20724 1.27248 1.94882 1.22290 0.95673 0.85452 0.92419 0.90424 1.21400 0.93306 0.99041 0.86472 1.45744 1.13317 1.76044 1.05498 1.18675 0.87763 0.76738 0.82923 1.90544 1.21409 1.54659 1.85553 1.21427 0.97907 1.50744 0.91025 0.89517 1.27019 0.97037 0.91362 1.03313 1.70199 1.17735 1.34294 1.22990 0.84981 0.77833 0.79863 0.75353 1.18400 1.19747 1.17204 1.22061 0.95543 0.99962 0.94033 1.22353 0.97382 0.98226 0.97860 1.22478 0.97517 1.01347 0.94324 1.22280 0.95323 0.97919 0.99824 1.22098 0.99339 0.98893 0.94385 0.94340 0.88702 0.92143 0.93887 0.94984 0.77529 0.91527 0.89645 0.92666 0.92919 0.90777 0.91559 0.90365 0.92208 0.90504 0.91687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 10.28 113.37 1.17 1.68 16 2 O -0.39 -11.53 8.60 -148.98 -1.28 -12.81 16 3 C 0.10 2.97 1.90 30.60 0.06 3.03 16 4 H 0.08 2.07 7.61 -2.39 -0.02 2.06 16 5 C 0.12 5.10 5.18 86.38 0.45 5.55 16 6 N -0.75 -35.86 5.45 -467.40 -2.55 -38.41 16 7 C 0.53 32.47 7.75 86.36 0.67 33.13 16 8 O -0.63 -44.30 15.02 -4.32 -0.06 -44.36 16 9 C -0.57 -33.55 9.54 24.83 0.24 -33.31 16 10 H 0.09 4.52 7.85 -2.91 -0.02 4.50 16 11 C 0.03 1.57 5.50 85.31 0.47 2.04 16 12 N -0.82 -51.58 11.83 21.84 0.26 -51.32 16 13 Si 1.00 41.53 29.56 68.60 2.03 43.56 16 14 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 15 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 16 H -0.25 -9.57 7.11 99.48 0.71 -8.87 16 17 C -0.10 -2.41 2.83 -10.07 -0.03 -2.44 16 18 C -0.12 -3.22 5.19 31.70 0.16 -3.05 16 19 C -0.12 -2.42 6.91 31.91 0.22 -2.20 16 20 C -0.12 -2.11 6.83 31.67 0.22 -1.90 16 21 C -0.11 -2.11 6.22 31.32 0.19 -1.91 16 22 H 0.04 0.89 6.83 -2.39 -0.02 0.88 16 23 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 24 H 0.06 1.06 7.24 -2.39 -0.02 1.05 16 25 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.03 1.47 7.19 -2.39 -0.02 1.45 16 27 H 0.39 16.23 6.73 -92.71 -0.62 15.60 16 28 H 0.27 15.54 8.29 -92.71 -0.77 14.77 16 29 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.05 1.73 7.03 -2.39 -0.02 1.72 16 31 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.06 1.23 6.32 -2.38 -0.02 1.21 16 Total: -1.00 -77.42 298.26 2.64 -74.78 By element: Atomic # 1 Polarization: 27.52 SS G_CDS: 0.43 Total: 27.95 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: 3.81 Total: 0.61 kcal Atomic # 7 Polarization: -87.44 SS G_CDS: -2.29 Total: -89.73 kcal Atomic # 8 Polarization: -55.83 SS G_CDS: -1.35 Total: -57.18 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Total: -77.42 2.64 -74.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598396231.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.031 kcal (2) G-P(sol) polarization free energy of solvation -77.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds