Wall clock time and date at job start Thu Apr 9 2020 12:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.53155 * 2 1 4 4 C 1.53111 * 109.50700 * 239.90217 * 2 1 3 5 5 C 1.53122 * 109.16131 * 297.71124 * 4 2 1 6 6 C 1.53041 * 109.27653 * 302.34717 * 5 4 2 7 7 H 1.09003 * 109.46336 * 299.15790 * 6 5 4 8 8 C 1.53000 * 109.46334 * 179.19692 * 6 5 4 9 9 O 1.42910 * 109.46611 * 303.31175 * 8 6 5 10 10 N 1.46848 * 109.52526 * 59.17710 * 6 5 4 11 11 C 1.46900 * 110.99820 * 174.15918 * 10 6 5 12 12 C 1.53001 * 109.46659 * 189.00316 * 11 10 6 13 13 C 1.50708 * 109.47015 * 180.02562 * 12 11 10 14 14 H 1.08007 * 119.99719 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00144 * 179.97438 * 13 12 11 16 16 N 1.31520 * 120.00091 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00050 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47200 * 179.97438 * 17 15 13 19 19 H 1.48497 * 109.47047 * 300.00248 * 17 15 13 20 20 H 1.48500 * 109.46826 * 60.00207 * 17 15 13 21 21 C 1.46853 * 111.19667 * 298.25955 * 10 6 5 22 22 H 1.09000 * 109.47440 * 299.89869 * 1 2 3 23 23 H 1.08993 * 109.47221 * 59.90746 * 1 2 3 24 24 H 1.08999 * 109.46559 * 179.90023 * 1 2 3 25 25 H 1.09003 * 109.46696 * 180.09477 * 3 2 1 26 26 H 1.08994 * 109.47270 * 300.09778 * 3 2 1 27 27 H 1.09001 * 109.47265 * 60.09522 * 3 2 1 28 28 H 1.09001 * 109.52649 * 57.61446 * 4 2 1 29 29 H 1.09005 * 109.52509 * 177.74410 * 4 2 1 30 30 H 1.08996 * 109.50179 * 62.28652 * 5 4 2 31 31 H 1.09000 * 109.50653 * 182.36911 * 5 4 2 32 32 H 1.08997 * 109.47559 * 63.30932 * 8 6 5 33 33 H 1.09001 * 109.47022 * 183.31767 * 8 6 5 34 34 H 0.96702 * 113.99476 * 180.02562 * 9 8 6 35 35 H 1.09000 * 109.47003 * 69.00976 * 11 10 6 36 36 H 1.08999 * 109.47073 * 309.00364 * 11 10 6 37 37 H 1.08995 * 109.47435 * 60.00151 * 12 11 10 38 38 H 1.08999 * 109.47418 * 299.99837 * 12 11 10 39 39 H 0.96998 * 119.99425 * 359.97438 * 16 15 13 40 40 H 1.08995 * 109.45760 * 181.75976 * 21 10 6 41 41 H 1.09004 * 109.45782 * 301.73222 * 21 10 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0415 1.4420 0.0000 4 6 2.0413 -0.7237 -1.2486 5 6 1.5751 -2.1818 -1.2107 6 6 2.0848 -2.8419 0.0726 7 1 3.1745 -2.8195 0.0844 8 6 1.6044 -4.2936 0.1245 9 8 0.1788 -4.3272 0.0305 10 7 1.5676 -2.1134 1.2380 11 6 1.9224 -2.7995 2.4876 12 6 1.1844 -2.1439 3.6565 13 6 1.5488 -2.8473 4.9386 14 1 2.2381 -3.6786 4.9213 15 6 1.0029 -2.4291 6.1335 16 7 0.1639 -1.4166 6.1546 17 14 1.4540 -3.3015 7.7225 18 1 0.7388 -2.6644 8.8573 19 1 1.0633 -4.7312 7.6305 20 1 2.9192 -3.2020 7.9430 21 6 2.0410 -0.7233 1.2481 22 1 -0.3634 0.5122 0.8909 23 1 -0.3633 0.5152 -0.8891 24 1 -0.3632 -1.0277 -0.0018 25 1 3.1316 1.4407 -0.0017 26 1 1.6774 1.9567 -0.8890 27 1 1.6802 1.9557 0.8908 28 1 1.6443 -0.2375 -2.1398 29 1 3.1306 -0.6891 -1.2694 30 1 0.4859 -2.2162 -1.2298 31 1 1.9713 -2.7132 -2.0760 32 1 2.0366 -4.8494 -0.7076 33 1 1.9173 -4.7464 1.0654 34 1 -0.1961 -5.2182 0.0574 35 1 2.9978 -2.7260 2.6497 36 1 1.6360 -3.8490 2.4197 37 1 0.1091 -2.2173 3.4944 38 1 1.4708 -1.0944 3.7243 39 1 -0.0706 -0.9638 5.3294 40 1 1.6669 -0.2188 2.1390 41 1 3.1309 -0.7109 1.2544 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598647376.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:50 Heat of formation + Delta-G solvation = -69.505790 kcal Electronic energy + Delta-G solvation = -18795.586696 eV Core-core repulsion = 16095.465873 eV Total energy + Delta-G solvation = -2700.120823 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.69215 -36.54529 -34.99154 -33.25296 -31.99349 -28.84277 -27.99735 -26.94685 -25.00613 -23.82832 -23.01658 -20.71706 -19.88044 -18.34830 -16.97342 -16.72435 -15.46865 -15.22429 -14.53764 -14.10947 -13.96966 -13.67342 -13.37855 -13.16334 -12.87365 -12.76775 -12.22380 -12.10888 -11.73121 -11.54690 -11.50008 -11.20188 -11.04739 -10.80662 -10.58297 -10.36816 -10.22513 -10.10054 -9.96609 -9.88828 -9.52700 -9.37317 -8.50219 -8.24957 -7.61442 -6.30428 -3.98568 3.45758 3.48138 3.66881 4.30805 4.54513 4.61018 4.86257 4.97856 5.02652 5.25357 5.39522 5.46838 5.48668 5.57493 5.64266 5.75522 5.81217 5.86871 5.92174 5.99263 6.03763 6.12925 6.16767 6.18352 6.27067 6.35046 6.42765 6.47501 6.56655 6.65509 6.89443 6.92750 7.40829 7.53448 7.77660 7.83918 7.92715 8.31213 8.52633 8.95102 9.73650 11.10750 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.025212 B = 0.006776 C = 0.005815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.336822 B = 4131.346871 C = 4813.947155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.062 4.062 3 C -0.140 4.140 4 C -0.108 4.108 5 C -0.107 4.107 6 C 0.085 3.915 7 H 0.041 0.959 8 C 0.080 3.920 9 O -0.552 6.552 10 N -0.520 5.520 11 C 0.067 3.933 12 C 0.018 3.982 13 C -0.603 4.603 14 H 0.045 0.955 15 C 0.015 3.985 16 N -0.913 5.913 17 Si 1.068 2.932 18 H -0.282 1.282 19 H -0.288 1.288 20 H -0.289 1.289 21 C 0.066 3.934 22 H 0.050 0.950 23 H 0.039 0.961 24 H 0.075 0.925 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.083 0.917 31 H 0.055 0.945 32 H 0.039 0.961 33 H 0.051 0.949 34 H 0.369 0.631 35 H 0.015 0.985 36 H 0.067 0.933 37 H 0.016 0.984 38 H 0.006 0.994 39 H 0.270 0.730 40 H 0.083 0.917 41 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.692 -1.019 -15.345 15.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.063 4.063 3 C -0.198 4.198 4 C -0.146 4.146 5 C -0.145 4.145 6 C -0.024 4.024 7 H 0.058 0.942 8 C 0.002 3.998 9 O -0.355 6.355 10 N -0.244 5.244 11 C -0.060 4.060 12 C -0.019 4.019 13 C -0.642 4.642 14 H 0.063 0.937 15 C -0.188 4.188 16 N -0.549 5.549 17 Si 0.897 3.103 18 H -0.208 1.208 19 H -0.215 1.215 20 H -0.216 1.216 21 C -0.062 4.062 22 H 0.069 0.931 23 H 0.058 0.942 24 H 0.094 0.906 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.102 0.898 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.214 0.786 35 H 0.033 0.967 36 H 0.085 0.915 37 H 0.035 0.965 38 H 0.024 0.976 39 H 0.080 0.920 40 H 0.101 0.899 41 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 2.999 -0.367 -13.772 14.100 hybrid contribution 1.318 -0.686 -1.536 2.137 sum 4.317 -1.053 -15.308 15.940 Atomic orbital electron populations 1.21766 0.93752 1.03178 1.00179 1.20578 0.96786 0.94198 0.94708 1.21838 1.00488 0.95811 1.01650 1.21646 0.99741 0.95800 0.97410 1.21547 1.02902 0.94692 0.95318 1.21646 0.95676 0.92476 0.92587 0.94165 1.22296 0.82117 0.96190 0.99190 1.86620 1.19630 1.32281 1.96967 1.61938 1.59395 1.01236 1.01867 1.22251 0.96853 0.98295 0.88560 1.19185 0.95782 0.95283 0.91638 1.22018 1.30286 1.18579 0.93271 0.93662 1.25798 0.94281 0.96555 1.02199 1.70761 1.32153 1.20471 1.31505 0.83561 0.75839 0.75399 0.75540 1.20761 1.21503 1.21596 1.22153 0.96233 0.89720 0.98077 0.93061 0.94160 0.90608 0.93147 0.92847 0.92454 0.92240 0.92849 0.89809 0.92661 0.94299 0.93051 0.78565 0.96699 0.91519 0.96539 0.97591 0.91968 0.89876 0.96021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 8.04 37.16 0.30 -1.70 16 2 C -0.06 -0.91 0.77 -154.43 -0.12 -1.03 16 3 C -0.14 -1.78 8.48 37.16 0.32 -1.47 16 4 C -0.11 -1.41 4.79 -26.61 -0.13 -1.53 16 5 C -0.11 -1.47 4.85 -26.65 -0.13 -1.59 16 6 C 0.09 1.33 2.23 -67.72 -0.15 1.18 16 7 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 8 C 0.08 1.15 6.26 37.16 0.23 1.38 16 9 O -0.55 -8.26 12.76 -35.23 -0.45 -8.71 16 10 N -0.52 -9.76 3.71 -226.68 -0.84 -10.60 16 11 C 0.07 1.47 4.60 -3.82 -0.02 1.45 16 12 C 0.02 0.49 4.19 -27.88 -0.12 0.37 16 13 C -0.60 -17.63 9.11 -34.44 -0.31 -17.94 16 14 H 0.05 1.30 7.74 -52.48 -0.41 0.89 16 15 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 16 N -0.91 -28.63 13.65 55.43 0.76 -27.88 16 17 Si 1.07 25.79 29.90 -169.99 -5.08 20.71 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 21 C 0.07 1.18 4.00 -3.83 -0.02 1.16 16 22 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.08 1.30 6.01 -51.93 -0.31 0.99 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 1.28 6.01 -51.93 -0.31 0.97 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.05 0.78 5.94 -51.93 -0.31 0.47 16 34 H 0.37 3.85 9.12 45.56 0.42 4.27 16 35 H 0.01 0.33 8.13 -51.93 -0.42 -0.09 16 36 H 0.07 1.45 5.63 -51.93 -0.29 1.16 16 37 H 0.02 0.47 8.01 -51.93 -0.42 0.06 16 38 H 0.01 0.17 6.26 -51.93 -0.33 -0.16 16 39 H 0.27 8.49 7.22 -40.82 -0.29 8.19 16 40 H 0.08 1.68 6.17 -51.93 -0.32 1.36 16 41 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 309.95 15.07 4.67 4.67 Total: -1.00 -32.21 309.95 -7.63 -39.84 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -6.44 Total: 1.34 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: -0.24 Total: -19.36 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: -0.08 Total: -38.48 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -0.45 Total: -8.71 kcal Atomic # 14 Polarization: 25.79 SS G_CDS: -5.08 Total: 20.71 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.21 -7.63 -39.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598647376.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.669 kcal (2) G-P(sol) polarization free energy of solvation -32.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds