Wall clock time and date at job start Thu Apr 9 2020 12:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.53123 * 2 1 4 4 C 1.53116 * 109.50061 * 239.90217 * 2 1 3 5 5 C 1.53126 * 109.15896 * 182.40351 * 4 2 1 6 6 C 1.53037 * 109.27660 * 57.65289 * 5 4 2 7 7 H 1.08999 * 109.46017 * 60.84110 * 6 5 4 8 8 C 1.53003 * 109.46228 * 180.80445 * 6 5 4 9 9 O 1.42904 * 109.46830 * 55.05329 * 8 6 5 10 10 N 1.46849 * 109.52584 * 300.82343 * 6 5 4 11 11 C 1.46896 * 110.99963 * 185.84083 * 10 6 5 12 12 C 1.52998 * 109.47029 * 301.83609 * 11 10 6 13 13 C 1.50706 * 109.47348 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99758 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00102 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00217 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99766 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47057 * 179.97438 * 17 15 13 19 19 H 1.48500 * 109.47389 * 300.00068 * 17 15 13 20 20 H 1.48504 * 109.47102 * 60.00417 * 17 15 13 21 21 C 1.46847 * 111.19859 * 61.73897 * 10 6 5 22 22 H 1.08997 * 109.47069 * 299.89566 * 1 2 3 23 23 H 1.08991 * 109.47146 * 59.90340 * 1 2 3 24 24 H 1.09007 * 109.46707 * 179.90082 * 1 2 3 25 25 H 1.09008 * 109.46840 * 180.09567 * 3 2 1 26 26 H 1.08994 * 109.47603 * 300.09820 * 3 2 1 27 27 H 1.09006 * 109.47413 * 60.10342 * 3 2 1 28 28 H 1.09001 * 109.52538 * 302.30838 * 4 2 1 29 29 H 1.08998 * 109.52633 * 62.43803 * 4 2 1 30 30 H 1.08997 * 109.50286 * 177.59600 * 5 4 2 31 31 H 1.09004 * 109.49924 * 297.68057 * 5 4 2 32 32 H 1.08996 * 109.47459 * 175.05112 * 8 6 5 33 33 H 1.09001 * 109.47075 * 295.05835 * 8 6 5 34 34 H 0.96699 * 114.00001 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.47274 * 181.83740 * 11 10 6 36 36 H 1.09002 * 109.47154 * 61.83247 * 11 10 6 37 37 H 1.09001 * 109.47671 * 60.00253 * 12 11 10 38 38 H 1.09006 * 109.47297 * 299.99972 * 12 11 10 39 39 H 0.97001 * 119.99646 * 359.97438 * 16 15 13 40 40 H 1.09003 * 109.45935 * 58.27779 * 21 10 6 41 41 H 1.08997 * 109.46116 * 178.25218 * 21 10 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0416 1.4419 0.0000 4 6 2.0412 -0.7238 -1.2487 5 6 3.5712 -0.7719 -1.2108 6 6 4.0230 -1.4729 0.0724 7 1 3.6376 -2.4924 0.0842 8 6 5.5518 -1.5056 0.1243 9 8 6.0613 -0.1770 -0.0078 10 7 3.5093 -0.7421 1.2379 11 6 4.0373 -1.3058 2.4874 12 6 3.6552 -2.7843 2.5813 13 6 4.1963 -3.3626 3.8635 14 1 4.7571 -2.7381 4.5432 15 6 3.9755 -4.6888 4.1689 16 7 3.2931 -5.4495 3.3410 17 14 4.6469 -5.4057 5.7578 18 1 4.2749 -6.8404 5.8497 19 1 6.1261 -5.2754 5.7736 20 1 4.0729 -4.6711 6.9137 21 6 2.0410 -0.7234 1.2480 22 1 -0.3633 0.5122 0.8909 23 1 -0.3633 0.5153 -0.8890 24 1 -0.3633 -1.0278 -0.0018 25 1 3.1316 1.4407 -0.0017 26 1 1.6774 1.9567 -0.8890 27 1 1.6803 1.9557 0.8909 28 1 1.6452 -1.7391 -1.2690 29 1 1.7147 -0.1877 -2.1398 30 1 3.9395 -1.3234 -2.0758 31 1 3.9678 0.2432 -1.2304 32 1 5.8741 -1.9251 1.0773 33 1 5.9299 -2.1224 -0.6909 34 1 7.0264 -0.1216 0.0169 35 1 3.6156 -0.7670 3.3359 36 1 5.1230 -1.2097 2.4991 37 1 4.0768 -3.3233 1.7329 38 1 2.5694 -2.8805 2.5696 39 1 2.9448 -5.0773 2.5157 40 1 1.6648 -1.7464 1.2544 41 1 1.6906 -0.2021 2.1388 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598647377.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:52 Heat of formation + Delta-G solvation = -71.816948 kcal Electronic energy + Delta-G solvation = -18943.698197 eV Core-core repulsion = 16243.477154 eV Total energy + Delta-G solvation = -2700.221042 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.73790 -36.50720 -35.15234 -33.07923 -31.93995 -28.74943 -27.89597 -26.99804 -25.01606 -23.73465 -22.82382 -21.58402 -19.44584 -18.20207 -16.89088 -16.69444 -15.54320 -15.17543 -14.43899 -14.08570 -13.88327 -13.72411 -13.36864 -13.10084 -12.97145 -12.55245 -12.18197 -11.95634 -11.84751 -11.58269 -11.54063 -11.25637 -10.96745 -10.80107 -10.56271 -10.44497 -10.22269 -10.07812 -9.98554 -9.85964 -9.77321 -9.40030 -8.61476 -8.34215 -7.44660 -6.38566 -4.08005 3.41765 3.43570 3.62309 4.41741 4.54437 4.64785 4.88946 5.05613 5.08894 5.34746 5.38094 5.48656 5.63669 5.69216 5.74401 5.82585 5.86618 5.93151 6.01938 6.08431 6.11025 6.14022 6.19255 6.24319 6.29965 6.33505 6.45338 6.52231 6.55436 6.66951 6.79463 6.86677 7.32782 7.37261 7.68926 7.78081 7.96772 8.23992 8.43295 8.85726 9.64557 11.01329 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026389 B = 0.006894 C = 0.006102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.781449 B = 4060.459698 C = 4587.862150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.063 4.063 3 C -0.130 4.130 4 C -0.109 4.109 5 C -0.107 4.107 6 C 0.088 3.912 7 H 0.054 0.946 8 C 0.079 3.921 9 O -0.558 6.558 10 N -0.523 5.523 11 C 0.062 3.938 12 C -0.022 4.022 13 C -0.599 4.599 14 H 0.049 0.951 15 C 0.015 3.985 16 N -0.912 5.912 17 Si 1.068 2.932 18 H -0.283 1.283 19 H -0.288 1.288 20 H -0.288 1.288 21 C 0.066 3.934 22 H 0.054 0.946 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.075 0.925 26 H 0.040 0.960 27 H 0.046 0.954 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.039 0.961 34 H 0.367 0.633 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.007 0.993 38 H 0.007 0.993 39 H 0.267 0.733 40 H 0.035 0.965 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.201 10.283 -8.841 13.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.063 4.063 3 C -0.187 4.187 4 C -0.147 4.147 5 C -0.145 4.145 6 C -0.021 4.021 7 H 0.072 0.928 8 C 0.001 3.999 9 O -0.362 6.362 10 N -0.246 5.246 11 C -0.065 4.065 12 C -0.060 4.060 13 C -0.638 4.638 14 H 0.067 0.933 15 C -0.189 4.189 16 N -0.549 5.549 17 Si 0.896 3.104 18 H -0.208 1.208 19 H -0.214 1.214 20 H -0.214 1.214 21 C -0.062 4.062 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.094 0.906 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.057 0.943 34 H 0.212 0.788 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.025 0.975 38 H 0.025 0.975 39 H 0.077 0.923 40 H 0.053 0.947 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.594 9.522 -8.013 12.459 hybrid contribution 0.173 0.233 -0.712 0.769 sum -0.421 9.755 -8.725 13.094 Atomic orbital electron populations 1.21839 0.95062 1.01534 1.01357 1.20579 0.94339 0.96306 0.95068 1.21766 1.02894 0.94160 0.99930 1.21647 0.96049 0.99912 0.97099 1.21555 0.94985 1.02158 0.95791 1.21596 0.92765 0.96159 0.91591 0.92809 1.22310 0.94034 0.83590 0.99931 1.86558 1.24809 1.28062 1.96743 1.62229 1.06777 1.53260 1.02373 1.22221 0.99416 0.95428 0.89396 1.19802 0.96184 0.92556 0.97498 1.21985 1.38086 0.97868 1.05884 0.93312 1.25852 0.95423 0.94107 1.03517 1.70797 1.33760 1.38741 1.11557 0.83558 0.75937 0.76214 0.74678 1.20788 1.21438 1.21425 1.22065 0.88536 0.98633 0.96976 0.92734 0.92882 0.92892 0.90644 0.94127 0.93488 0.92581 0.92332 0.92635 0.90100 0.92296 0.94297 0.78805 0.92097 0.91550 0.97452 0.97507 0.92294 0.94669 0.91354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 8.48 37.16 0.32 -1.45 16 2 C -0.06 -0.90 0.77 -154.43 -0.12 -1.02 16 3 C -0.13 -1.79 8.04 37.15 0.30 -1.49 16 4 C -0.11 -1.52 4.79 -26.61 -0.13 -1.65 16 5 C -0.11 -1.59 4.83 -26.65 -0.13 -1.72 16 6 C 0.09 1.53 1.63 -67.72 -0.11 1.42 16 7 H 0.05 1.06 6.61 -51.93 -0.34 0.72 16 8 C 0.08 1.29 6.20 37.16 0.23 1.52 16 9 O -0.56 -8.37 12.72 -35.23 -0.45 -8.82 16 10 N -0.52 -9.71 3.93 -226.69 -0.89 -10.60 16 11 C 0.06 1.34 4.73 -3.83 -0.02 1.32 16 12 C -0.02 -0.57 3.50 -27.88 -0.10 -0.66 16 13 C -0.60 -17.11 9.11 -34.44 -0.31 -17.43 16 14 H 0.05 1.37 7.74 -52.48 -0.41 0.96 16 15 C 0.01 0.43 5.46 -17.82 -0.10 0.33 16 16 N -0.91 -28.10 13.65 55.43 0.76 -27.35 16 17 Si 1.07 25.42 29.90 -169.99 -5.08 20.34 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 20 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 21 C 0.07 1.16 3.77 -3.84 -0.01 1.15 16 22 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.68 8.14 -51.92 -0.42 0.25 16 25 H 0.07 1.17 6.01 -51.92 -0.31 0.86 16 26 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.08 1.25 5.98 -51.93 -0.31 0.94 16 32 H 0.06 1.08 5.90 -51.93 -0.31 0.78 16 33 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.37 3.83 9.12 45.56 0.42 4.25 16 35 H 0.06 1.34 8.06 -51.93 -0.42 0.92 16 36 H 0.07 1.44 6.21 -51.93 -0.32 1.11 16 37 H 0.01 0.20 6.19 -51.93 -0.32 -0.13 16 38 H 0.01 0.18 6.55 -51.93 -0.34 -0.16 16 39 H 0.27 8.22 7.22 -40.82 -0.29 7.93 16 40 H 0.04 0.69 6.75 -51.93 -0.35 0.34 16 41 H 0.07 1.21 8.06 -51.93 -0.42 0.79 16 LS Contribution 306.51 15.07 4.62 4.62 Total: -1.00 -31.12 306.51 -7.56 -38.67 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -6.33 Total: 2.80 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: -0.18 Total: -19.67 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: -0.13 Total: -37.94 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: -0.45 Total: -8.82 kcal Atomic # 14 Polarization: 25.42 SS G_CDS: -5.08 Total: 20.34 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.12 -7.56 -38.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598647377.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.142 kcal (2) G-P(sol) polarization free energy of solvation -31.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds