Wall clock time and date at job start Thu Apr 9 2020 12:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42902 * 113.99801 * 2 1 4 4 H 1.08999 * 109.50689 * 309.91496 * 3 2 1 5 5 C 1.53102 * 109.54050 * 189.80476 * 3 2 1 6 6 N 1.47011 * 109.25671 * 183.19672 * 5 3 2 7 7 C 1.46893 * 110.99861 * 182.39343 * 6 5 3 8 8 C 1.53004 * 109.47183 * 312.68036 * 7 6 5 9 9 C 1.50694 * 115.54928 * 294.71397 * 8 7 6 10 10 H 1.07998 * 120.00264 * 114.86954 * 9 8 7 11 11 C 1.37879 * 119.99969 * 294.86341 * 9 8 7 12 12 N 1.31510 * 119.99885 * 356.34351 * 11 9 8 13 13 Si 1.86802 * 119.99904 * 176.34533 * 11 9 8 14 14 H 1.48497 * 109.47077 * 180.02562 * 13 11 9 15 15 H 1.48498 * 109.46864 * 300.00071 * 13 11 9 16 16 H 1.48499 * 109.47234 * 60.00211 * 13 11 9 17 17 C 1.53007 * 117.49446 * 80.38445 * 8 7 6 18 18 C 1.52999 * 117.49768 * 149.03827 * 8 7 6 19 19 C 1.47004 * 110.75388 * 58.61434 * 6 5 3 20 20 C 1.53100 * 109.26400 * 301.38427 * 19 6 5 21 21 O 1.43015 * 109.50324 * 70.00219 * 3 2 1 22 22 H 1.08998 * 109.47081 * 60.00154 * 1 2 3 23 23 H 1.09003 * 109.47002 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47022 * 299.99763 * 1 2 3 25 25 H 1.08997 * 109.50356 * 63.26162 * 5 3 2 26 26 H 1.09003 * 109.50486 * 303.13113 * 5 3 2 27 27 H 1.09005 * 109.47530 * 192.68176 * 7 6 5 28 28 H 1.09003 * 109.47314 * 72.68068 * 7 6 5 29 29 H 0.96998 * 120.00171 * 357.43206 * 12 11 9 30 30 H 1.09004 * 117.48838 * 215.00257 * 17 8 7 31 31 H 1.08995 * 117.49906 * 0.02562 * 17 8 7 32 32 H 1.09000 * 117.49962 * 359.97438 * 18 8 7 33 33 H 1.09009 * 117.49772 * 144.97533 * 18 8 7 34 34 H 1.09003 * 109.50916 * 61.31589 * 19 6 5 35 35 H 1.08999 * 109.50988 * 181.40649 * 19 6 5 36 36 H 1.08997 * 109.50912 * 176.78422 * 20 19 6 37 37 H 1.09000 * 109.50251 * 296.87244 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.5560 1.9061 -0.7880 5 6 3.5174 1.1951 -0.2457 6 7 4.1206 2.5335 -0.1683 7 6 5.5603 2.4794 -0.4549 8 6 6.1978 1.3436 0.3480 9 6 6.1765 1.5144 1.8451 10 1 5.6036 0.8344 2.4581 11 6 6.8884 2.5388 2.4323 12 7 7.6432 3.3226 1.6937 13 14 6.7808 2.8132 4.2769 14 1 7.6331 3.9687 4.6559 15 1 5.3721 3.0930 4.6543 16 1 7.2513 1.5966 4.9867 17 6 6.0569 -0.0767 -0.2033 18 6 7.4089 0.6382 -0.2655 19 6 3.8673 3.1439 1.1448 20 6 2.3567 3.2348 1.3767 21 8 1.7833 1.9292 1.2668 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 3.6949 0.7724 -1.2346 26 1 3.9634 0.5505 0.5118 27 1 6.0224 3.4261 -0.1749 28 1 5.7124 2.3017 -1.5195 29 1 7.7285 3.1573 0.7418 30 1 5.9488 -0.8876 0.5172 31 1 5.5104 -0.2019 -1.1380 32 1 7.7513 0.9829 -1.2412 33 1 8.1906 0.2979 0.4138 34 1 4.3189 2.5305 1.9245 35 1 4.3010 4.1435 1.1713 36 1 2.1647 3.6341 2.3725 37 1 1.9127 3.8921 0.6291 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602895189.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:15:24 Heat of formation + Delta-G solvation = -58.481622 kcal Electronic energy + Delta-G solvation = -18948.635392 eV Core-core repulsion = 16113.159518 eV Total energy + Delta-G solvation = -2835.475874 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.54945 -37.63215 -36.35321 -33.93684 -32.17589 -30.04440 -28.04319 -26.27398 -25.12285 -23.57226 -23.11540 -21.29206 -20.07331 -19.11625 -17.11216 -16.52380 -16.33318 -15.70427 -14.72702 -14.34215 -14.17116 -13.87066 -13.80635 -13.66132 -13.18036 -12.85855 -12.47062 -12.14467 -11.67254 -11.13017 -11.00221 -10.96002 -10.71499 -10.56019 -10.53166 -10.37145 -10.15935 -9.75246 -9.49645 -9.17909 -8.80132 -8.50201 -8.33569 -7.46642 -6.42178 -4.11215 3.37426 3.39273 3.56471 3.57482 4.23312 4.43051 4.81505 5.11830 5.22881 5.30697 5.35623 5.45659 5.55213 5.66036 5.74468 5.76295 5.91001 5.93032 6.02019 6.13032 6.28212 6.38069 6.44675 6.55760 6.67178 6.82840 6.85933 7.06377 7.21179 7.23077 7.30609 7.53976 7.74447 7.79791 8.20484 8.32398 8.77762 9.54840 10.94528 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.024247 B = 0.009478 C = 0.008025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.482941 B = 2953.491637 C = 3488.440651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.370 6.370 3 C 0.259 3.741 4 H 0.052 0.948 5 C 0.033 3.967 6 N -0.521 5.521 7 C 0.089 3.911 8 C -0.004 4.004 9 C -0.563 4.563 10 H 0.051 0.949 11 C 0.031 3.969 12 N -0.900 5.900 13 Si 1.056 2.944 14 H -0.281 1.281 15 H -0.284 1.284 16 H -0.288 1.288 17 C -0.192 4.192 18 C -0.192 4.192 19 C -0.001 4.001 20 C 0.076 3.924 21 O -0.412 6.412 22 H 0.038 0.962 23 H 0.083 0.917 24 H 0.049 0.951 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.047 0.953 29 H 0.275 0.725 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.105 -1.340 -3.271 10.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.289 6.289 3 C 0.163 3.837 4 H 0.069 0.931 5 C -0.095 4.095 6 N -0.245 5.245 7 C -0.039 4.039 8 C -0.006 4.006 9 C -0.601 4.601 10 H 0.069 0.931 11 C -0.176 4.176 12 N -0.534 5.534 13 Si 0.884 3.116 14 H -0.207 1.207 15 H -0.211 1.211 16 H -0.215 1.215 17 C -0.229 4.229 18 C -0.231 4.231 19 C -0.129 4.129 20 C 0.000 4.000 21 O -0.333 6.333 22 H 0.057 0.943 23 H 0.102 0.898 24 H 0.067 0.933 25 H 0.094 0.906 26 H 0.093 0.907 27 H 0.099 0.901 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.118 0.882 35 H 0.095 0.905 36 H 0.112 0.888 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.806 -0.293 -2.263 10.068 hybrid contribution -0.110 -1.320 -0.909 1.607 sum -9.916 -1.613 -3.172 10.535 Atomic orbital electron populations 1.22707 0.80980 1.02370 1.00267 1.87985 1.20093 1.26739 1.94048 1.22979 0.93742 0.81748 0.85191 0.93057 1.22505 0.91311 0.93038 1.02654 1.62641 1.13769 1.18509 1.29629 1.21780 0.85606 1.00100 0.96398 1.19832 0.96298 0.88940 0.95504 1.21203 1.33100 1.16938 0.88824 0.93091 1.25679 0.92848 0.92900 1.06131 1.70757 1.35540 1.38203 1.08915 0.83720 0.76587 0.76485 0.74781 1.20664 1.21068 1.21451 1.22860 1.01065 0.97993 1.01021 1.22922 0.92043 1.07685 1.00447 1.23144 0.94521 1.01578 0.93643 1.22658 0.93624 0.82449 1.01304 1.87766 1.77087 1.32049 1.36406 0.94349 0.89806 0.93258 0.90639 0.90701 0.90065 0.93472 0.91301 0.90468 0.91258 0.91699 0.90301 0.88196 0.90513 0.88823 0.93575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.88 101.05 1.10 1.53 16 2 O -0.37 -6.44 10.62 -59.03 -0.63 -7.06 16 3 C 0.26 4.67 3.32 37.21 0.12 4.79 16 4 H 0.05 0.86 8.09 -51.93 -0.42 0.44 16 5 C 0.03 0.66 3.90 -3.71 -0.01 0.64 16 6 N -0.52 -10.60 4.94 -234.31 -1.16 -11.76 16 7 C 0.09 1.95 5.27 -3.83 -0.02 1.93 16 8 C 0.00 -0.10 0.18 -155.66 -0.03 -0.12 16 9 C -0.56 -14.67 5.56 -34.44 -0.19 -14.86 16 10 H 0.05 1.40 7.82 -52.49 -0.41 0.99 16 11 C 0.03 0.81 5.17 -17.82 -0.09 0.72 16 12 N -0.90 -25.04 13.17 55.43 0.73 -24.31 16 13 Si 1.06 24.03 29.91 -169.99 -5.08 18.94 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 15 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 16 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 17 C -0.19 -4.14 7.66 -26.69 -0.20 -4.34 16 18 C -0.19 -4.33 9.60 -26.70 -0.26 -4.59 16 19 C 0.00 -0.02 5.19 -3.72 -0.02 -0.04 16 20 C 0.08 1.32 7.01 37.21 0.26 1.58 16 21 O -0.41 -7.80 10.31 -59.03 -0.61 -8.41 16 22 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.05 0.64 7.89 -51.93 -0.41 0.23 16 25 H 0.08 1.41 7.24 -51.93 -0.38 1.04 16 26 H 0.07 1.69 5.70 -51.93 -0.30 1.40 16 27 H 0.08 1.94 6.33 -51.93 -0.33 1.61 16 28 H 0.05 0.97 8.09 -51.93 -0.42 0.55 16 29 H 0.28 7.64 5.96 -40.82 -0.24 7.40 16 30 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 31 H 0.07 1.37 7.01 -51.93 -0.36 1.01 16 32 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.08 1.88 8.14 -51.92 -0.42 1.46 16 34 H 0.10 2.37 4.98 -51.93 -0.26 2.11 16 35 H 0.08 1.58 8.04 -51.93 -0.42 1.16 16 36 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 288.13 15.07 4.34 4.34 Total: -1.00 -28.08 288.13 -7.44 -35.52 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -5.70 Total: 5.50 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: 0.66 Total: -12.76 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: -0.43 Total: -36.07 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -1.24 Total: -15.48 kcal Atomic # 14 Polarization: 24.03 SS G_CDS: -5.08 Total: 18.94 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.08 -7.44 -35.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602895189.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.958 kcal (2) G-P(sol) polarization free energy of solvation -28.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds