Wall clock time and date at job start Thu Apr 9 2020 12:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42902 * 113.99801 * 2 1 4 4 H 1.08999 * 109.50689 * 309.91496 * 3 2 1 5 5 C 1.53102 * 109.54050 * 189.80476 * 3 2 1 6 6 N 1.47011 * 109.25671 * 183.19672 * 5 3 2 7 7 C 1.46893 * 110.99861 * 182.39343 * 6 5 3 8 8 C 1.53004 * 109.47183 * 312.68036 * 7 6 5 9 9 C 1.50694 * 115.54928 * 294.71397 * 8 7 6 10 10 H 1.07998 * 120.00264 * 114.86954 * 9 8 7 11 11 C 1.37879 * 119.99969 * 294.86341 * 9 8 7 12 12 N 1.31510 * 119.99885 * 356.34351 * 11 9 8 13 13 Si 1.86802 * 119.99904 * 176.34533 * 11 9 8 14 14 H 1.48497 * 109.47077 * 180.02562 * 13 11 9 15 15 H 1.48498 * 109.46864 * 300.00071 * 13 11 9 16 16 H 1.48499 * 109.47234 * 60.00211 * 13 11 9 17 17 C 1.53007 * 117.49446 * 80.38445 * 8 7 6 18 18 C 1.52999 * 117.49768 * 149.03827 * 8 7 6 19 19 C 1.47004 * 110.75388 * 58.61434 * 6 5 3 20 20 C 1.53100 * 109.26400 * 301.38427 * 19 6 5 21 21 O 1.43015 * 109.50324 * 70.00219 * 3 2 1 22 22 H 1.08998 * 109.47081 * 60.00154 * 1 2 3 23 23 H 1.09003 * 109.47002 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47022 * 299.99763 * 1 2 3 25 25 H 1.08997 * 109.50356 * 63.26162 * 5 3 2 26 26 H 1.09003 * 109.50486 * 303.13113 * 5 3 2 27 27 H 1.09005 * 109.47530 * 192.68176 * 7 6 5 28 28 H 1.09003 * 109.47314 * 72.68068 * 7 6 5 29 29 H 0.96998 * 120.00171 * 357.43206 * 12 11 9 30 30 H 1.09004 * 117.48838 * 215.00257 * 17 8 7 31 31 H 1.08995 * 117.49906 * 0.02562 * 17 8 7 32 32 H 1.09000 * 117.49962 * 359.97438 * 18 8 7 33 33 H 1.09009 * 117.49772 * 144.97533 * 18 8 7 34 34 H 1.09003 * 109.50916 * 61.31589 * 19 6 5 35 35 H 1.08999 * 109.50988 * 181.40649 * 19 6 5 36 36 H 1.08997 * 109.50912 * 176.78422 * 20 19 6 37 37 H 1.09000 * 109.50251 * 296.87244 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.5560 1.9061 -0.7880 5 6 3.5174 1.1951 -0.2457 6 7 4.1206 2.5335 -0.1683 7 6 5.5603 2.4794 -0.4549 8 6 6.1978 1.3436 0.3480 9 6 6.1765 1.5144 1.8451 10 1 5.6036 0.8344 2.4581 11 6 6.8884 2.5388 2.4323 12 7 7.6432 3.3226 1.6937 13 14 6.7808 2.8132 4.2769 14 1 7.6331 3.9687 4.6559 15 1 5.3721 3.0930 4.6543 16 1 7.2513 1.5966 4.9867 17 6 6.0569 -0.0767 -0.2033 18 6 7.4089 0.6382 -0.2655 19 6 3.8673 3.1439 1.1448 20 6 2.3567 3.2348 1.3767 21 8 1.7833 1.9292 1.2668 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 3.6949 0.7724 -1.2346 26 1 3.9634 0.5505 0.5118 27 1 6.0224 3.4261 -0.1749 28 1 5.7124 2.3017 -1.5195 29 1 7.7285 3.1573 0.7418 30 1 5.9488 -0.8876 0.5172 31 1 5.5104 -0.2019 -1.1380 32 1 7.7513 0.9829 -1.2412 33 1 8.1906 0.2979 0.4138 34 1 4.3189 2.5305 1.9245 35 1 4.3010 4.1435 1.1713 36 1 2.1647 3.6341 2.3725 37 1 1.9127 3.8921 0.6291 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602895189.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:15:24 Heat of formation + Delta-G solvation = -77.330274 kcal Electronic energy + Delta-G solvation = -18949.452731 eV Core-core repulsion = 16113.159518 eV Total energy + Delta-G solvation = -2836.293213 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.07554 -39.21572 -37.75560 -35.57367 -34.17743 -31.49719 -29.60609 -27.49392 -27.10514 -25.13416 -24.60321 -23.06451 -21.76947 -20.85218 -18.76597 -18.14514 -17.70343 -17.10088 -16.33047 -15.93599 -15.87685 -15.66708 -15.16843 -15.01223 -14.72718 -14.45663 -14.12898 -14.04451 -13.06007 -12.81025 -12.73084 -12.58283 -12.29506 -12.15661 -12.08477 -12.01849 -11.96769 -11.32332 -10.94130 -10.76593 -10.64889 -10.38882 -10.22146 -9.19346 -8.51792 -6.19109 1.52192 1.55550 1.75689 2.27919 2.54023 2.77951 3.12210 3.35977 3.46946 3.90409 3.95156 4.08526 4.23416 4.27888 4.40089 4.41283 4.48827 4.51302 4.56694 4.58266 4.68351 4.80563 4.80762 4.84515 4.99245 5.05639 5.10138 5.32682 5.40870 5.52875 5.95699 6.00136 6.06083 6.19650 6.24642 6.30305 6.71249 7.50159 8.85833 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.024247 B = 0.009478 C = 0.008025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.482941 B = 2953.491637 C = 3488.440651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.392 6.392 3 C 0.262 3.738 4 H 0.074 0.926 5 C 0.038 3.962 6 N -0.513 5.513 7 C 0.098 3.902 8 C -0.024 4.024 9 C -0.562 4.562 10 H 0.028 0.972 11 C -0.004 4.004 12 N -0.923 5.923 13 Si 1.090 2.910 14 H -0.283 1.283 15 H -0.269 1.269 16 H -0.283 1.283 17 C -0.172 4.172 18 C -0.193 4.193 19 C 0.001 3.999 20 C 0.081 3.919 21 O -0.425 6.425 22 H 0.059 0.941 23 H 0.106 0.894 24 H 0.045 0.955 25 H 0.086 0.914 26 H 0.042 0.958 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.267 0.733 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.112 0.888 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.827 -1.368 -3.970 12.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.311 6.311 3 C 0.166 3.834 4 H 0.091 0.909 5 C -0.091 4.091 6 N -0.236 5.236 7 C -0.031 4.031 8 C -0.026 4.026 9 C -0.599 4.599 10 H 0.046 0.954 11 C -0.206 4.206 12 N -0.558 5.558 13 Si 0.914 3.086 14 H -0.208 1.208 15 H -0.194 1.194 16 H -0.209 1.209 17 C -0.209 4.209 18 C -0.232 4.232 19 C -0.127 4.127 20 C 0.005 3.995 21 O -0.347 6.347 22 H 0.077 0.923 23 H 0.124 0.876 24 H 0.064 0.936 25 H 0.105 0.895 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.111 0.889 32 H 0.102 0.898 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.130 0.870 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.549 -0.337 -2.968 11.929 hybrid contribution 0.383 -1.384 -0.715 1.605 sum -11.166 -1.722 -3.683 11.883 Atomic orbital electron populations 1.22971 0.78571 1.04216 1.01106 1.87948 1.22687 1.26360 1.94129 1.22940 0.92568 0.82465 0.85378 0.90901 1.22460 0.92765 0.91782 1.02090 1.62680 1.12648 1.18956 1.29359 1.21628 0.86386 0.98172 0.96866 1.19880 0.97485 0.90622 0.94570 1.21258 1.32160 1.16195 0.90297 0.95378 1.26620 0.92391 0.92748 1.08815 1.70849 1.37128 1.39210 1.08659 0.83274 0.77389 0.76431 0.71531 1.20812 1.19380 1.20913 1.22814 1.00164 0.96463 1.01424 1.22886 0.91740 1.07741 1.00810 1.23047 0.96878 1.00319 0.92481 1.22723 0.91085 0.82437 1.03276 1.87760 1.76936 1.32759 1.37261 0.92270 0.87581 0.93600 0.89541 0.94006 0.92372 0.91860 0.92189 0.91495 0.88926 0.89780 0.92306 0.91732 0.91238 0.86988 0.91091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.88 113.37 1.23 1.85 16 2 O -0.39 -12.78 10.62 -126.22 -1.34 -14.12 16 3 C 0.26 8.85 3.32 72.02 0.24 9.09 16 4 H 0.07 2.17 8.09 -2.39 -0.02 2.15 16 5 C 0.04 1.43 3.90 86.32 0.34 1.77 16 6 N -0.51 -20.30 4.94 -895.23 -4.42 -24.72 16 7 C 0.10 4.24 5.27 86.31 0.45 4.69 16 8 C -0.02 -1.12 0.18 -52.93 -0.01 -1.13 16 9 C -0.56 -29.80 5.56 25.60 0.14 -29.66 16 10 H 0.03 1.59 7.82 -2.91 -0.02 1.56 16 11 C 0.00 -0.23 5.17 84.66 0.44 0.21 16 12 N -0.92 -52.15 13.17 21.45 0.28 -51.86 16 13 Si 1.09 48.82 29.91 68.60 2.05 50.87 16 14 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 15 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 16 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 17 C -0.17 -7.26 7.66 30.62 0.23 -7.02 16 18 C -0.19 -8.65 9.60 30.62 0.29 -8.35 16 19 C 0.00 0.04 5.19 86.32 0.45 0.49 16 20 C 0.08 2.63 7.01 72.02 0.50 3.13 16 21 O -0.43 -15.29 10.31 -126.22 -1.30 -16.59 16 22 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 24 H 0.05 1.07 7.89 -2.39 -0.02 1.05 16 25 H 0.09 3.05 7.24 -2.39 -0.02 3.03 16 26 H 0.04 1.88 5.70 -2.39 -0.01 1.86 16 27 H 0.06 2.80 6.33 -2.38 -0.02 2.78 16 28 H 0.06 2.51 8.09 -2.39 -0.02 2.49 16 29 H 0.27 15.13 5.96 -92.71 -0.55 14.57 16 30 H 0.07 2.95 8.14 -2.38 -0.02 2.93 16 31 H 0.09 3.47 7.01 -2.39 -0.02 3.45 16 32 H 0.08 3.41 8.14 -2.39 -0.02 3.39 16 33 H 0.06 2.84 8.14 -2.38 -0.02 2.82 16 34 H 0.06 3.09 4.98 -2.39 -0.01 3.08 16 35 H 0.07 2.85 8.04 -2.39 -0.02 2.83 16 36 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 37 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -60.22 288.13 0.85 -59.38 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: 1.26 Total: 21.98 kcal Atomic # 6 Polarization: -29.26 SS G_CDS: 4.32 Total: -24.94 kcal Atomic # 7 Polarization: -72.44 SS G_CDS: -4.14 Total: -76.58 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -2.64 Total: -30.71 kcal Atomic # 14 Polarization: 48.82 SS G_CDS: 2.05 Total: 50.87 kcal Total: -60.22 0.85 -59.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602895189.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.955 kcal (2) G-P(sol) polarization free energy of solvation -60.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds