Wall clock time and date at job start Thu Apr 9 2020 12:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47204 * 2 1 4 4 O 1.42898 * 109.50314 * 299.99603 * 3 2 1 5 5 C 1.53116 * 109.50414 * 60.07652 * 3 2 1 6 6 C 1.53119 * 109.16245 * 177.59434 * 5 3 2 7 7 C 1.53039 * 109.28162 * 302.34979 * 6 5 3 8 8 N 1.46841 * 109.52301 * 59.17151 * 7 6 5 9 9 C 1.46896 * 111.00013 * 174.16239 * 8 7 6 10 10 H 1.09005 * 109.47370 * 310.82734 * 9 8 7 11 11 C 1.52999 * 109.47307 * 70.82737 * 9 8 7 12 12 C 1.52999 * 109.47468 * 190.82944 * 9 8 7 13 13 C 1.50694 * 109.47375 * 62.29770 * 12 9 8 14 14 H 1.08001 * 119.99617 * 5.06719 * 13 12 9 15 15 C 1.37872 * 120.00252 * 185.06799 * 13 12 9 16 16 N 1.31513 * 120.00398 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 120.00112 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.47109 * 89.99885 * 17 15 13 19 19 H 1.48497 * 109.47481 * 209.99862 * 17 15 13 20 20 H 1.48505 * 109.46923 * 330.00441 * 17 15 13 21 21 C 1.46848 * 111.23967 * 298.28370 * 8 7 6 22 22 H 1.08998 * 109.47213 * 300.00183 * 1 2 3 23 23 H 1.09002 * 109.46949 * 59.99982 * 1 2 3 24 24 H 1.09003 * 109.47011 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47213 * 239.99817 * 2 1 3 26 26 H 1.09002 * 109.46949 * 120.00017 * 2 1 3 27 27 H 0.96706 * 113.99858 * 60.00522 * 4 3 2 28 28 H 1.08999 * 109.52597 * 297.50165 * 5 3 2 29 29 H 1.09006 * 109.52558 * 57.69345 * 5 3 2 30 30 H 1.09003 * 109.50003 * 62.28571 * 6 5 3 31 31 H 1.08997 * 109.50527 * 182.36299 * 6 5 3 32 32 H 1.08993 * 109.46382 * 179.19276 * 7 6 5 33 33 H 1.09004 * 109.45640 * 299.16961 * 7 6 5 34 34 H 1.09005 * 109.46908 * 59.99714 * 11 9 8 35 35 H 1.08995 * 109.48037 * 180.02562 * 11 9 8 36 36 H 1.09009 * 109.47128 * 300.00441 * 11 9 8 37 37 H 1.09007 * 109.47063 * 182.29846 * 12 9 8 38 38 H 1.08997 * 109.46712 * 302.29419 * 12 9 8 39 39 H 0.96994 * 120.00717 * 180.02562 * 16 15 13 40 40 H 1.08999 * 109.42293 * 301.69042 * 21 8 7 41 41 H 1.09001 * 109.49940 * 181.71740 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.5641 2.1167 -1.1666 5 6 1.5316 2.1644 1.2509 6 6 2.0953 3.5879 1.2736 7 6 3.6241 3.5266 1.2397 8 7 4.0603 2.8275 0.0243 9 6 5.5223 2.8706 -0.1118 10 1 5.8699 3.8947 0.0243 11 6 6.1600 1.9704 0.9484 12 6 5.9196 2.3782 -1.5048 13 6 5.3381 3.2977 -2.5475 14 1 4.8142 4.1928 -2.2463 15 6 5.4749 2.9964 -3.8859 16 7 4.9678 3.7991 -4.7959 17 14 6.3817 1.4486 -4.4070 18 1 5.4202 0.3212 -4.5064 19 1 7.0220 1.6710 -5.7282 20 1 7.4238 1.1229 -3.4003 21 6 3.5704 1.4433 0.0020 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 0.6001 2.1553 -1.2328 28 1 0.4425 2.2042 1.2312 29 1 1.8614 1.6279 2.1406 30 1 1.7337 4.1364 0.4038 31 1 1.7709 4.0933 2.1832 32 1 4.0283 4.5388 1.2413 33 1 3.9855 2.9898 2.1168 34 1 5.8124 0.9463 0.8122 35 1 7.2448 2.0027 0.8478 36 1 5.8769 2.3213 1.9409 37 1 7.0062 2.3715 -1.5916 38 1 5.5369 1.3689 -1.6562 39 1 5.0637 3.5870 -5.7375 40 1 3.9326 0.9163 0.8846 41 1 3.9350 0.9427 -0.8950 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602983606.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:15:33 Heat of formation + Delta-G solvation = -81.330186 kcal Electronic energy + Delta-G solvation = -19127.251561 eV Core-core repulsion = 16426.617994 eV Total energy + Delta-G solvation = -2700.633567 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.92282 -38.19795 -35.32211 -34.18165 -33.55537 -31.36054 -30.18714 -29.31623 -25.81971 -24.70301 -24.38687 -22.13716 -20.92665 -20.12308 -18.75392 -17.40798 -17.24641 -16.43106 -15.81537 -15.62881 -15.30461 -15.18545 -14.87626 -14.59485 -14.20690 -13.90978 -13.65116 -13.36923 -13.28128 -13.05031 -12.86709 -12.58498 -12.40557 -12.33053 -12.03057 -11.86266 -11.80016 -11.69294 -11.57580 -11.36124 -11.19715 -10.82985 -10.64601 -10.43025 -8.73848 -8.14008 -6.11191 1.34324 1.36190 1.46966 2.42713 3.07683 3.25321 3.46717 3.87331 3.88194 4.02158 4.13764 4.26406 4.28781 4.39367 4.41377 4.54140 4.63889 4.67722 4.70382 4.72577 4.82453 4.93819 4.95660 5.05218 5.08133 5.11677 5.14082 5.15836 5.23298 5.26279 5.33453 5.49158 5.54182 5.56217 5.77958 6.41997 6.53165 6.62238 6.95133 7.12761 7.47676 9.04252 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.021788 B = 0.008759 C = 0.007645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.830542 B = 3196.061352 C = 3661.648596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.147 4.147 3 C 0.131 3.869 4 O -0.561 6.561 5 C -0.134 4.134 6 C -0.110 4.110 7 C 0.054 3.946 8 N -0.529 5.529 9 C 0.095 3.905 10 H 0.058 0.942 11 C -0.174 4.174 12 C -0.001 4.001 13 C -0.478 4.478 14 H 0.029 0.971 15 C -0.005 4.005 16 N -0.959 5.959 17 Si 0.943 3.057 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.247 1.247 21 C 0.073 3.927 22 H 0.072 0.928 23 H 0.052 0.948 24 H 0.066 0.934 25 H 0.050 0.950 26 H 0.083 0.917 27 H 0.371 0.629 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.048 0.952 31 H 0.086 0.914 32 H 0.058 0.942 33 H 0.043 0.957 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.018 0.982 38 H 0.012 0.988 39 H 0.259 0.741 40 H 0.057 0.943 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.171 -8.403 16.447 19.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.185 4.185 3 C 0.091 3.909 4 O -0.367 6.367 5 C -0.172 4.172 6 C -0.148 4.148 7 C -0.074 4.074 8 N -0.253 5.253 9 C -0.013 4.013 10 H 0.077 0.923 11 C -0.233 4.233 12 C -0.039 4.039 13 C -0.517 4.517 14 H 0.048 0.952 15 C -0.199 4.199 16 N -0.602 5.602 17 Si 0.767 3.233 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.171 1.171 21 C -0.055 4.055 22 H 0.091 0.909 23 H 0.071 0.929 24 H 0.085 0.915 25 H 0.068 0.932 26 H 0.102 0.898 27 H 0.218 0.782 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.067 0.933 31 H 0.104 0.896 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.036 0.964 38 H 0.030 0.970 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.735 -8.064 15.770 18.950 hybrid contribution 0.184 -0.680 -0.335 0.780 sum -6.551 -8.744 15.436 18.911 Atomic orbital electron populations 1.21799 0.93832 1.02803 1.02394 1.22137 0.97993 0.95847 1.02504 1.21368 0.92810 0.91157 0.85600 1.86903 1.25985 1.79615 1.44225 1.22234 1.01484 0.95917 0.97547 1.21485 0.94097 0.97419 1.01758 1.22132 0.96608 0.98229 0.90406 1.61720 1.10560 1.15282 1.37701 1.21516 0.86722 0.98476 0.94635 0.92322 1.22408 1.01654 1.00204 0.99066 1.19596 0.95328 0.95481 0.93444 1.21193 1.32285 1.07668 0.90550 0.95219 1.25920 0.97005 0.99994 0.96964 1.70088 1.49119 1.40111 1.00878 0.85778 0.79613 0.80050 0.77816 1.20139 1.21270 1.17094 1.22013 0.93745 0.89903 0.99877 0.90895 0.92857 0.91451 0.93160 0.89816 0.78164 0.89648 0.89985 0.93348 0.89555 0.92333 0.93948 0.92431 0.91687 0.91478 0.96384 0.96987 0.93252 0.92520 0.93405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.26 71.98 0.67 -2.02 16 2 C -0.15 -3.43 5.21 30.59 0.16 -3.27 16 3 C 0.13 3.87 0.75 -10.74 -0.01 3.86 16 4 O -0.56 -20.79 12.27 -148.98 -1.83 -22.62 16 5 C -0.13 -3.05 4.56 30.67 0.14 -2.91 16 6 C -0.11 -2.94 5.94 30.65 0.18 -2.76 16 7 C 0.05 1.68 5.15 86.33 0.44 2.12 16 8 N -0.53 -20.83 4.12 -871.13 -3.59 -24.42 16 9 C 0.09 3.86 2.28 44.92 0.10 3.96 16 10 H 0.06 2.51 7.97 -2.38 -0.02 2.49 16 11 C -0.17 -5.34 8.44 71.98 0.61 -4.73 16 12 C 0.00 -0.05 3.41 29.85 0.10 0.05 16 13 C -0.48 -29.32 9.32 25.60 0.24 -29.08 16 14 H 0.03 2.05 7.99 -2.91 -0.02 2.03 16 15 C 0.00 -0.29 5.47 84.65 0.46 0.18 16 16 N -0.96 -64.28 13.96 21.45 0.30 -63.98 16 17 Si 0.94 47.49 27.37 68.60 1.88 49.36 16 18 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 19 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 20 H -0.25 -11.44 6.69 99.48 0.67 -10.78 16 21 C 0.07 2.56 3.50 86.33 0.30 2.86 16 22 H 0.07 1.06 6.49 -2.39 -0.02 1.05 16 23 H 0.05 0.99 6.78 -2.39 -0.02 0.98 16 24 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.37 10.42 7.34 -74.05 -0.54 9.88 16 28 H 0.09 1.58 6.58 -2.39 -0.02 1.57 16 29 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 30 H 0.05 1.59 7.80 -2.39 -0.02 1.57 16 31 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.06 1.90 8.01 -2.39 -0.02 1.88 16 33 H 0.04 1.12 6.90 -2.39 -0.02 1.11 16 34 H 0.06 1.69 6.45 -2.38 -0.02 1.68 16 35 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.07 1.74 6.85 -2.38 -0.02 1.73 16 37 H 0.02 0.87 7.55 -2.38 -0.02 0.85 16 38 H 0.01 0.59 5.51 -2.39 -0.01 0.58 16 39 H 0.26 16.27 8.31 -92.71 -0.77 15.50 16 40 H 0.06 1.68 6.57 -2.39 -0.02 1.67 16 41 H 0.05 2.03 6.21 -2.39 -0.01 2.01 16 Total: -1.00 -75.33 304.05 0.57 -74.76 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: 0.41 Total: 18.64 kcal Atomic # 6 Polarization: -35.14 SS G_CDS: 3.40 Total: -31.74 kcal Atomic # 7 Polarization: -85.11 SS G_CDS: -3.29 Total: -88.40 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -1.83 Total: -22.62 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 1.88 Total: 49.36 kcal Total: -75.33 0.57 -74.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602983606.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.571 kcal (2) G-P(sol) polarization free energy of solvation -75.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds