Wall clock time and date at job start Thu Apr 9 2020 12:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 113.00997 * 2 1 4 4 C 1.53935 * 113.73117 * 131.63266 * 2 1 3 5 5 N 1.47962 * 86.18081 * 138.07945 * 4 2 1 6 6 C 1.46902 * 110.99930 * 222.41790 * 5 4 2 7 7 C 1.52999 * 109.46632 * 174.92093 * 6 5 4 8 8 O 1.42897 * 109.47249 * 64.15745 * 7 6 5 9 9 C 1.42902 * 113.99839 * 175.07611 * 8 7 6 10 10 C 1.50704 * 109.46983 * 184.90482 * 9 8 7 11 11 H 1.07994 * 119.99900 * 0.02562 * 10 9 8 12 12 C 1.37876 * 119.99586 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00545 * 0.02562 * 12 10 9 14 14 Si 1.86807 * 119.99683 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.46875 * 90.00295 * 14 12 10 16 16 H 1.48503 * 109.46843 * 210.00326 * 14 12 10 17 17 H 1.48495 * 109.46992 * 330.00207 * 14 12 10 18 18 C 1.47962 * 90.76027 * 335.30989 * 5 4 2 19 19 C 1.52995 * 113.75796 * 270.37130 * 18 5 4 20 20 C 1.52996 * 113.75879 * 139.00614 * 18 5 4 21 21 H 1.09002 * 109.46808 * 307.87522 * 1 2 3 22 22 H 1.08998 * 109.46969 * 67.86725 * 1 2 3 23 23 H 1.08996 * 109.46724 * 187.87303 * 1 2 3 24 24 H 1.08995 * 109.46827 * 172.13187 * 3 2 1 25 25 H 1.09006 * 109.46522 * 292.12663 * 3 2 1 26 26 H 1.08996 * 109.47291 * 52.12648 * 3 2 1 27 27 H 1.09002 * 113.75841 * 252.39615 * 4 2 1 28 28 H 1.09006 * 113.76312 * 23.76310 * 4 2 1 29 29 H 1.08997 * 109.47174 * 294.91842 * 6 5 4 30 30 H 1.08994 * 109.47048 * 54.91838 * 6 5 4 31 31 H 1.09004 * 109.46795 * 184.15654 * 7 6 5 32 32 H 1.08994 * 109.47400 * 304.15313 * 7 6 5 33 33 H 1.09005 * 109.47441 * 304.90602 * 9 8 7 34 34 H 1.08996 * 109.47139 * 64.90722 * 9 8 7 35 35 H 0.96998 * 120.00257 * 180.02562 * 13 12 10 36 36 H 1.09004 * 109.46967 * 163.56944 * 19 18 5 37 37 H 1.08999 * 109.47616 * 283.56562 * 19 18 5 38 38 H 1.09001 * 109.47278 * 43.56691 * 19 18 5 39 39 H 1.08998 * 109.47323 * 323.44438 * 20 18 5 40 40 H 1.09009 * 109.47150 * 83.44039 * 20 18 5 41 41 H 1.09005 * 109.47503 * 203.43906 * 20 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1281 1.4083 0.0000 4 6 2.1496 -0.9362 1.0533 5 7 3.1155 -1.3198 0.0001 6 6 3.3459 -2.7706 0.0002 7 6 4.2480 -3.1437 -1.1779 8 8 5.5315 -2.5400 -1.0049 9 6 6.4891 -2.9159 -1.9968 10 6 7.8300 -2.3212 -1.6514 11 1 7.9401 -1.7171 -0.7630 12 6 8.9165 -2.5494 -2.4690 13 7 8.7826 -3.2854 -3.5506 14 14 10.5789 -1.8129 -2.0404 15 1 11.3360 -2.7632 -1.1866 16 1 11.3414 -1.5526 -3.2879 17 1 10.3808 -0.5375 -1.3061 18 6 2.1496 -0.9363 -1.0531 19 6 1.2245 -2.0756 -1.4854 20 6 2.7854 -0.2005 -2.2342 21 1 -0.3633 0.6309 0.8112 22 1 -0.3633 0.3872 -0.9519 23 1 -0.3632 -1.0180 0.1408 24 1 3.2071 1.3447 0.1407 25 1 1.9138 1.8939 -0.9521 26 1 1.6895 1.9893 0.8112 27 1 2.6025 -0.4119 1.8947 28 1 1.4905 -1.7479 1.3614 29 1 3.8279 -3.0619 0.9334 30 1 2.3922 -3.2899 -0.0936 31 1 4.3590 -4.2272 -1.2215 32 1 3.8006 -2.7867 -2.1054 33 1 6.5710 -4.0023 -2.0296 34 1 6.1677 -2.5462 -2.9705 35 1 9.5471 -3.4462 -4.1256 36 1 0.3725 -1.6659 -2.0279 37 1 1.7710 -2.7620 -2.1322 38 1 0.8709 -2.6108 -0.6041 39 1 3.5810 0.4501 -1.8713 40 1 3.2003 -0.9263 -2.9337 41 1 2.0278 0.3989 -2.7393 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687776665.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:16 Heat of formation + Delta-G solvation = -23.789958 kcal Electronic energy + Delta-G solvation = -18427.675021 eV Core-core repulsion = 15729.536585 eV Total energy + Delta-G solvation = -2698.138436 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.05534 -36.56014 -33.41984 -32.48128 -31.24408 -29.29562 -28.59517 -26.80549 -26.02399 -23.92787 -22.72171 -22.14647 -20.33194 -16.98558 -16.36610 -16.11550 -15.85450 -15.15876 -15.03769 -14.30424 -14.19502 -13.62608 -13.58997 -13.03111 -12.59857 -12.44552 -12.37541 -12.06191 -12.01603 -11.85521 -11.58028 -11.41543 -11.29044 -11.21001 -10.85473 -10.77014 -10.69532 -10.30249 -10.07000 -9.88343 -9.81385 -9.02680 -8.70319 -8.36978 -8.04813 -6.04300 -4.04987 3.34660 3.39278 3.45657 4.00826 4.31469 4.41583 4.69536 4.93821 5.09942 5.13542 5.17629 5.25163 5.32132 5.49060 5.51669 5.55694 5.63812 5.68071 5.74146 5.82928 5.86865 5.89663 5.94540 6.02685 6.06540 6.10545 6.16229 6.22145 6.28035 6.35421 6.49293 6.68151 6.81896 7.18327 7.39443 7.51823 7.87901 8.24823 8.71002 9.10466 9.59768 11.07436 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.036233 B = 0.005171 C = 0.004971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.585608 B = 5413.517346 C = 5630.925010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.084 4.084 3 C -0.123 4.123 4 C 0.004 3.996 5 N -0.447 5.447 6 C 0.018 3.982 7 C 0.071 3.929 8 O -0.379 6.379 9 C 0.194 3.806 10 C -0.509 4.509 11 H 0.066 0.934 12 C 0.055 3.945 13 N -0.901 5.901 14 Si 0.906 3.094 15 H -0.279 1.279 16 H -0.286 1.286 17 H -0.271 1.271 18 C 0.060 3.940 19 C -0.155 4.155 20 C -0.124 4.124 21 H 0.054 0.946 22 H 0.056 0.944 23 H 0.055 0.945 24 H 0.071 0.929 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.085 0.915 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.052 0.948 31 H 0.035 0.965 32 H 0.036 0.964 33 H 0.001 0.999 34 H 0.002 0.998 35 H 0.263 0.737 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.071 0.929 40 H 0.055 0.945 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.799 4.729 5.637 19.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.085 4.085 3 C -0.180 4.180 4 C -0.125 4.125 5 N -0.169 5.169 6 C -0.110 4.110 7 C -0.008 4.008 8 O -0.298 6.298 9 C 0.120 3.880 10 C -0.547 4.547 11 H 0.084 0.916 12 C -0.145 4.145 13 N -0.541 5.541 14 Si 0.734 3.266 15 H -0.205 1.205 16 H -0.211 1.211 17 H -0.196 1.196 18 C -0.030 4.030 19 C -0.213 4.213 20 C -0.181 4.181 21 H 0.073 0.927 22 H 0.075 0.925 23 H 0.074 0.926 24 H 0.090 0.910 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.104 0.896 28 H 0.080 0.920 29 H 0.096 0.904 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.018 0.982 34 H 0.020 0.980 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.074 0.926 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.957 5.041 5.634 18.566 hybrid contribution 0.115 -0.566 -0.151 0.597 sum -16.842 4.475 5.483 18.269 Atomic orbital electron populations 1.21772 0.94510 1.01530 1.01637 1.22327 0.94531 0.95782 0.95862 1.21528 1.01857 0.93435 1.01153 1.24017 0.94386 0.97856 0.96272 1.68805 1.31027 1.14936 1.02120 1.22719 0.97930 0.90039 1.00311 1.22197 0.86992 0.95586 0.95975 1.87952 1.18922 1.69581 1.53347 1.20163 0.86784 0.94443 0.86632 1.21075 0.92485 1.31562 1.09602 0.91562 1.24942 0.99331 0.95433 0.94839 1.69968 1.31151 1.38946 1.14001 0.86360 0.82942 0.79613 0.77728 1.20542 1.21142 1.19602 1.22794 0.91636 0.94816 0.93736 1.22066 0.99601 0.98292 1.01331 1.21589 1.00287 1.00153 0.96119 0.92669 0.92480 0.92642 0.91041 0.92450 0.93035 0.89645 0.91988 0.90400 0.93016 0.94712 0.94640 0.98153 0.98000 0.92785 0.91746 0.91630 0.92393 0.90971 0.92570 0.92872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 8.22 37.16 0.31 -0.94 16 2 C -0.08 -0.96 1.31 -153.57 -0.20 -1.16 16 3 C -0.12 -1.39 7.90 37.16 0.29 -1.09 16 4 C 0.00 0.04 6.75 -2.77 -0.02 0.03 16 5 N -0.45 -7.02 5.82 -222.41 -1.29 -8.32 16 6 C 0.02 0.30 4.77 -3.82 -0.02 0.28 16 7 C 0.07 1.39 5.86 37.16 0.22 1.60 16 8 O -0.38 -9.61 10.26 -35.23 -0.36 -9.97 16 9 C 0.19 5.54 5.70 36.01 0.21 5.75 16 10 C -0.51 -15.49 9.43 -34.44 -0.32 -15.82 16 11 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 12 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 13 N -0.90 -27.59 13.29 55.43 0.74 -26.86 16 14 Si 0.91 22.40 29.54 -169.99 -5.02 17.38 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 18 C 0.06 0.81 0.78 -130.55 -0.10 0.70 16 19 C -0.15 -1.77 6.24 37.16 0.23 -1.54 16 20 C -0.12 -1.79 8.15 37.16 0.30 -1.49 16 21 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 23 H 0.05 0.48 6.84 -51.93 -0.36 0.12 16 24 H 0.07 0.96 7.72 -51.93 -0.40 0.56 16 25 H 0.06 0.61 7.57 -51.93 -0.39 0.22 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.09 1.06 8.10 -51.93 -0.42 0.64 16 28 H 0.06 0.69 7.32 -51.93 -0.38 0.31 16 29 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.05 0.69 5.38 -51.93 -0.28 0.41 16 31 H 0.03 0.66 8.12 -51.93 -0.42 0.24 16 32 H 0.04 0.68 5.40 -51.93 -0.28 0.40 16 33 H 0.00 0.02 8.12 -51.93 -0.42 -0.40 16 34 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16 35 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 36 H 0.06 0.64 7.77 -51.93 -0.40 0.23 16 37 H 0.06 0.81 6.61 -51.93 -0.34 0.47 16 38 H 0.06 0.61 5.66 -51.93 -0.29 0.32 16 39 H 0.07 1.16 7.26 -51.93 -0.38 0.79 16 40 H 0.06 0.90 7.19 -51.92 -0.37 0.52 16 41 H 0.05 0.64 8.06 -51.93 -0.42 0.22 16 LS Contribution 314.71 15.07 4.74 4.74 Total: -1.00 -32.07 314.71 -7.62 -39.70 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: -7.22 Total: -4.52 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: 0.79 Total: -12.15 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: -0.56 Total: -35.18 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: -0.36 Total: -9.97 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.07 -7.62 -39.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687776665.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.907 kcal (2) G-P(sol) polarization free energy of solvation -32.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds