Wall clock time and date at job start Thu Apr 9 2020 12:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 113.00997 * 2 1 4 4 C 1.53935 * 113.73117 * 131.63266 * 2 1 3 5 5 N 1.47962 * 86.18081 * 138.07945 * 4 2 1 6 6 C 1.46902 * 110.99930 * 222.41790 * 5 4 2 7 7 C 1.52999 * 109.46632 * 174.92093 * 6 5 4 8 8 O 1.42897 * 109.47249 * 64.15745 * 7 6 5 9 9 C 1.42902 * 113.99839 * 175.07611 * 8 7 6 10 10 C 1.50704 * 109.46983 * 184.90482 * 9 8 7 11 11 H 1.07994 * 119.99900 * 0.02562 * 10 9 8 12 12 C 1.37876 * 119.99586 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00545 * 0.02562 * 12 10 9 14 14 Si 1.86807 * 119.99683 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.46875 * 90.00295 * 14 12 10 16 16 H 1.48503 * 109.46843 * 210.00326 * 14 12 10 17 17 H 1.48495 * 109.46992 * 330.00207 * 14 12 10 18 18 C 1.47962 * 90.76027 * 335.30989 * 5 4 2 19 19 C 1.52995 * 113.75796 * 270.37130 * 18 5 4 20 20 C 1.52996 * 113.75879 * 139.00614 * 18 5 4 21 21 H 1.09002 * 109.46808 * 307.87522 * 1 2 3 22 22 H 1.08998 * 109.46969 * 67.86725 * 1 2 3 23 23 H 1.08996 * 109.46724 * 187.87303 * 1 2 3 24 24 H 1.08995 * 109.46827 * 172.13187 * 3 2 1 25 25 H 1.09006 * 109.46522 * 292.12663 * 3 2 1 26 26 H 1.08996 * 109.47291 * 52.12648 * 3 2 1 27 27 H 1.09002 * 113.75841 * 252.39615 * 4 2 1 28 28 H 1.09006 * 113.76312 * 23.76310 * 4 2 1 29 29 H 1.08997 * 109.47174 * 294.91842 * 6 5 4 30 30 H 1.08994 * 109.47048 * 54.91838 * 6 5 4 31 31 H 1.09004 * 109.46795 * 184.15654 * 7 6 5 32 32 H 1.08994 * 109.47400 * 304.15313 * 7 6 5 33 33 H 1.09005 * 109.47441 * 304.90602 * 9 8 7 34 34 H 1.08996 * 109.47139 * 64.90722 * 9 8 7 35 35 H 0.96998 * 120.00257 * 180.02562 * 13 12 10 36 36 H 1.09004 * 109.46967 * 163.56944 * 19 18 5 37 37 H 1.08999 * 109.47616 * 283.56562 * 19 18 5 38 38 H 1.09001 * 109.47278 * 43.56691 * 19 18 5 39 39 H 1.08998 * 109.47323 * 323.44438 * 20 18 5 40 40 H 1.09009 * 109.47150 * 83.44039 * 20 18 5 41 41 H 1.09005 * 109.47503 * 203.43906 * 20 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1281 1.4083 0.0000 4 6 2.1496 -0.9362 1.0533 5 7 3.1155 -1.3198 0.0001 6 6 3.3459 -2.7706 0.0002 7 6 4.2480 -3.1437 -1.1779 8 8 5.5315 -2.5400 -1.0049 9 6 6.4891 -2.9159 -1.9968 10 6 7.8300 -2.3212 -1.6514 11 1 7.9401 -1.7171 -0.7630 12 6 8.9165 -2.5494 -2.4690 13 7 8.7826 -3.2854 -3.5506 14 14 10.5789 -1.8129 -2.0404 15 1 11.3360 -2.7632 -1.1866 16 1 11.3414 -1.5526 -3.2879 17 1 10.3808 -0.5375 -1.3061 18 6 2.1496 -0.9363 -1.0531 19 6 1.2245 -2.0756 -1.4854 20 6 2.7854 -0.2005 -2.2342 21 1 -0.3633 0.6309 0.8112 22 1 -0.3633 0.3872 -0.9519 23 1 -0.3632 -1.0180 0.1408 24 1 3.2071 1.3447 0.1407 25 1 1.9138 1.8939 -0.9521 26 1 1.6895 1.9893 0.8112 27 1 2.6025 -0.4119 1.8947 28 1 1.4905 -1.7479 1.3614 29 1 3.8279 -3.0619 0.9334 30 1 2.3922 -3.2899 -0.0936 31 1 4.3590 -4.2272 -1.2215 32 1 3.8006 -2.7867 -2.1054 33 1 6.5710 -4.0023 -2.0296 34 1 6.1677 -2.5462 -2.9705 35 1 9.5471 -3.4462 -4.1256 36 1 0.3725 -1.6659 -2.0279 37 1 1.7710 -2.7620 -2.1322 38 1 0.8709 -2.6108 -0.6041 39 1 3.5810 0.4501 -1.8713 40 1 3.2003 -0.9263 -2.9337 41 1 2.0278 0.3989 -2.7393 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687776665.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:16 Heat of formation + Delta-G solvation = -46.095111 kcal Electronic energy + Delta-G solvation = -18428.642245 eV Core-core repulsion = 15729.536585 eV Total energy + Delta-G solvation = -2699.105660 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.09638 -38.48117 -35.11169 -34.24452 -32.28781 -30.69563 -29.62818 -28.84704 -26.93457 -25.18467 -24.47563 -23.79953 -21.53530 -18.64104 -17.98782 -17.57245 -17.24328 -16.66344 -16.25433 -16.03279 -15.86521 -15.06653 -14.68173 -14.56285 -13.80735 -13.76812 -13.44499 -13.38316 -13.02971 -13.02471 -12.87836 -12.77654 -12.73542 -12.62152 -12.54812 -12.32194 -12.16738 -11.74850 -11.59722 -11.29168 -11.08137 -10.89651 -10.76502 -10.17770 -9.45545 -8.32985 -6.45329 1.38004 1.41411 1.53718 2.34207 2.94416 3.00353 3.23679 3.40178 3.73753 4.02005 4.12281 4.17926 4.22421 4.32881 4.41167 4.46497 4.58315 4.67922 4.71714 4.79801 4.81373 4.86483 4.89425 4.90190 4.91888 4.95661 5.09611 5.11882 5.16556 5.20134 5.28434 5.31290 5.46725 5.54131 5.62004 5.72089 5.96177 6.28956 6.56064 6.85293 7.27125 8.79577 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.036233 B = 0.005171 C = 0.004971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.585608 B = 5413.517346 C = 5630.925010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.073 4.073 3 C -0.121 4.121 4 C 0.007 3.993 5 N -0.488 5.488 6 C 0.028 3.972 7 C 0.063 3.937 8 O -0.395 6.395 9 C 0.211 3.789 10 C -0.546 4.546 11 H 0.058 0.942 12 C 0.007 3.993 13 N -0.931 5.931 14 Si 0.983 3.017 15 H -0.266 1.266 16 H -0.272 1.272 17 H -0.266 1.266 18 C 0.054 3.946 19 C -0.151 4.151 20 C -0.122 4.122 21 H 0.067 0.933 22 H 0.064 0.936 23 H 0.064 0.936 24 H 0.041 0.959 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.039 0.961 32 H 0.037 0.963 33 H -0.017 1.017 34 H -0.021 1.021 35 H 0.271 0.729 36 H 0.084 0.916 37 H 0.050 0.950 38 H 0.072 0.928 39 H 0.046 0.954 40 H 0.030 0.970 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.977 5.316 6.489 20.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.074 4.074 3 C -0.179 4.179 4 C -0.122 4.122 5 N -0.211 5.211 6 C -0.100 4.100 7 C -0.015 4.015 8 O -0.314 6.314 9 C 0.136 3.864 10 C -0.584 4.584 11 H 0.076 0.924 12 C -0.191 4.191 13 N -0.571 5.571 14 Si 0.806 3.194 15 H -0.191 1.191 16 H -0.197 1.197 17 H -0.190 1.190 18 C -0.036 4.036 19 C -0.209 4.209 20 C -0.179 4.179 21 H 0.086 0.914 22 H 0.083 0.917 23 H 0.083 0.917 24 H 0.060 0.940 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.000 1.000 34 H -0.004 1.004 35 H 0.080 0.920 36 H 0.103 0.897 37 H 0.069 0.931 38 H 0.091 0.909 39 H 0.065 0.935 40 H 0.049 0.951 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -18.163 5.622 6.493 20.091 hybrid contribution 0.424 -0.752 -0.448 0.972 sum -17.739 4.870 6.045 19.363 Atomic orbital electron populations 1.21744 0.91997 1.02542 1.02616 1.22258 0.96269 0.94883 0.93987 1.21507 1.00074 0.94108 1.02170 1.24083 0.93836 0.98562 0.95681 1.68778 1.33502 1.14353 1.04432 1.22638 0.98232 0.91280 0.97853 1.22530 0.85087 0.95641 0.98199 1.87910 1.20798 1.70369 1.52333 1.19769 0.87417 0.92931 0.86324 1.21365 0.94000 1.32853 1.10170 0.92365 1.25965 1.03622 0.95292 0.94247 1.70073 1.32881 1.39371 1.14747 0.85184 0.77194 0.78918 0.78116 1.19107 1.19681 1.19048 1.22923 0.91563 0.95990 0.93105 1.22034 0.99571 0.97389 1.01858 1.21568 1.00311 0.99554 0.96505 0.91396 0.91745 0.91714 0.94012 0.91941 0.91198 0.90035 0.89985 0.91199 0.89712 0.94275 0.94520 0.99960 1.00350 0.92026 0.89672 0.93110 0.90928 0.93522 0.95087 0.90347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.90 8.22 71.98 0.59 -1.31 16 2 C -0.07 -1.52 1.31 -51.53 -0.07 -1.58 16 3 C -0.12 -2.61 7.90 71.98 0.57 -2.04 16 4 C 0.01 0.15 6.75 86.41 0.58 0.74 16 5 N -0.49 -15.17 5.82 -857.58 -4.99 -20.16 16 6 C 0.03 0.89 4.77 86.30 0.41 1.31 16 7 C 0.06 2.53 5.86 71.98 0.42 2.95 16 8 O -0.39 -20.87 10.26 -148.98 -1.53 -22.40 16 9 C 0.21 12.60 5.70 71.24 0.41 13.00 16 10 C -0.55 -34.24 9.43 25.60 0.24 -34.00 16 11 H 0.06 3.65 7.81 -2.91 -0.02 3.63 16 12 C 0.01 0.42 5.46 84.65 0.46 0.88 16 13 N -0.93 -57.74 13.29 21.45 0.28 -57.45 16 14 Si 0.98 45.95 29.54 68.60 2.03 47.98 16 15 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 16 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 17 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 18 C 0.05 1.39 0.78 3.63 0.00 1.39 16 19 C -0.15 -3.11 6.24 71.98 0.45 -2.66 16 20 C -0.12 -3.58 8.15 71.98 0.59 -2.99 16 21 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 22 H 0.06 0.86 8.14 -2.39 -0.02 0.85 16 23 H 0.06 0.84 6.84 -2.39 -0.02 0.82 16 24 H 0.04 1.14 7.72 -2.39 -0.02 1.12 16 25 H 0.06 1.26 7.57 -2.38 -0.02 1.24 16 26 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.08 1.92 8.10 -2.39 -0.02 1.90 16 28 H 0.08 1.56 7.32 -2.38 -0.02 1.54 16 29 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.09 2.09 5.38 -2.39 -0.01 2.08 16 31 H 0.04 1.52 8.12 -2.39 -0.02 1.50 16 32 H 0.04 1.47 5.40 -2.39 -0.01 1.45 16 33 H -0.02 -1.07 8.12 -2.38 -0.02 -1.09 16 34 H -0.02 -1.33 8.14 -2.39 -0.02 -1.35 16 35 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 36 H 0.08 1.41 7.77 -2.38 -0.02 1.39 16 37 H 0.05 1.20 6.61 -2.39 -0.02 1.18 16 38 H 0.07 1.28 5.66 -2.39 -0.01 1.27 16 39 H 0.05 1.58 7.26 -2.39 -0.02 1.56 16 40 H 0.03 1.03 7.19 -2.38 -0.02 1.01 16 41 H 0.08 1.83 8.06 -2.38 -0.02 1.81 16 Total: -1.00 -70.75 314.71 1.43 -69.33 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: 0.97 Total: 7.03 kcal Atomic # 6 Polarization: -28.98 SS G_CDS: 4.66 Total: -24.32 kcal Atomic # 7 Polarization: -72.91 SS G_CDS: -4.70 Total: -77.61 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -1.53 Total: -22.40 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -70.75 1.43 -69.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687776665.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.232 kcal (2) G-P(sol) polarization free energy of solvation -70.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds