Wall clock time and date at job start Thu Apr 9 2020 12:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46494 * 120.00114 * 2 1 4 4 C 1.50693 * 109.47439 * 269.99739 * 3 2 1 5 5 H 1.08003 * 120.00127 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00403 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99641 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 120.00339 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.46935 * 359.97438 * 8 6 4 10 10 H 1.48492 * 109.47444 * 119.99703 * 8 6 4 11 11 H 1.48500 * 109.46914 * 239.99859 * 8 6 4 12 12 C 1.34778 * 119.99473 * 179.97438 * 2 1 3 13 13 O 1.21511 * 119.99862 * 179.97438 * 12 2 1 14 14 O 1.34637 * 120.00295 * 0.02562 * 12 2 1 15 15 C 1.45200 * 116.99977 * 179.97438 * 14 12 2 16 16 C 1.52997 * 109.46978 * 89.99768 * 15 14 12 17 17 C 1.52999 * 109.47317 * 179.97438 * 16 15 14 18 18 C 1.53005 * 109.47159 * 300.00546 * 17 16 15 19 19 C 1.52997 * 109.47452 * 59.99536 * 18 17 16 20 20 C 1.53000 * 109.47046 * 209.99558 * 15 14 12 21 21 H 1.08997 * 109.46907 * 270.00385 * 1 2 3 22 22 H 1.09004 * 109.46445 * 29.99834 * 1 2 3 23 23 H 1.08999 * 109.47212 * 149.99756 * 1 2 3 24 24 H 1.09006 * 109.47252 * 30.00324 * 3 2 1 25 25 H 1.09004 * 109.46770 * 149.99941 * 3 2 1 26 26 H 0.97004 * 119.99765 * 179.97438 * 7 6 4 27 27 H 1.09002 * 109.47097 * 329.99834 * 15 14 12 28 28 H 1.08996 * 109.47853 * 300.00072 * 16 15 14 29 29 H 1.09002 * 109.47153 * 60.00100 * 16 15 14 30 30 H 1.09000 * 109.47486 * 180.02562 * 17 16 15 31 31 H 1.09002 * 109.46716 * 60.00091 * 17 16 15 32 32 H 1.09002 * 109.46935 * 299.99411 * 18 17 16 33 33 H 1.09001 * 109.46812 * 179.97438 * 18 17 16 34 34 H 1.08993 * 109.47194 * 179.97438 * 19 18 17 35 35 H 1.09002 * 109.46695 * 59.99734 * 19 18 17 36 36 H 1.08992 * 109.47399 * 300.00084 * 20 15 14 37 37 H 1.09004 * 109.46724 * 60.00570 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4207 5 1 2.0976 1.0961 -2.2417 6 6 3.1271 2.8774 -1.6727 7 7 3.5544 3.6175 -0.6730 8 14 3.4379 3.4170 -3.4338 9 1 2.8600 2.4170 -4.3672 10 1 2.8009 4.7380 -3.6666 11 1 4.9004 3.5245 -3.6677 12 6 2.1388 -1.1673 0.0005 13 8 3.3540 -1.1674 0.0001 14 8 1.4656 -2.3332 0.0005 15 6 2.2564 -3.5510 0.0005 16 6 2.5342 -3.9787 1.4430 17 6 3.3669 -5.2622 1.4431 18 6 2.5964 -6.3701 0.7220 19 6 2.3186 -5.9424 -0.7205 20 6 1.4863 -4.6591 -0.7206 21 1 -0.3633 0.0001 1.0276 22 1 -0.3632 0.8901 -0.5138 23 1 -0.3633 -0.8899 -0.5139 24 1 1.6085 2.0284 0.5139 25 1 3.1500 1.1382 0.5139 26 1 4.0319 4.4430 -0.8502 27 1 3.2007 -3.3710 -0.5133 28 1 3.0827 -3.1893 1.9569 29 1 1.5899 -4.1586 1.9569 30 1 3.5644 -5.5672 2.4708 31 1 4.3112 -5.0826 0.9291 32 1 1.6521 -6.5497 1.2360 33 1 3.1898 -7.2844 0.7217 34 1 1.7701 -6.7318 -1.2343 35 1 3.2629 -5.7628 -1.2344 36 1 0.5421 -4.8391 -0.2068 37 1 1.2885 -4.3544 -1.7483 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704320658.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:23 Heat of formation + Delta-G solvation = -104.322175 kcal Electronic energy + Delta-G solvation = -17840.115736 eV Core-core repulsion = 15002.652067 eV Total energy + Delta-G solvation = -2837.463669 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.95942 -38.06197 -35.71812 -34.66483 -32.56214 -30.84963 -29.93169 -27.76840 -25.76255 -23.50337 -22.66936 -22.05610 -19.87651 -19.60471 -17.16328 -16.62791 -16.42459 -15.41085 -15.22431 -14.60724 -14.24877 -14.16834 -13.65099 -13.28654 -12.92890 -12.69874 -12.31088 -12.19595 -12.13953 -11.73988 -11.24317 -11.22725 -11.12578 -10.88557 -10.74893 -10.72205 -10.55218 -10.34079 -10.16017 -9.81211 -9.61445 -9.48560 -8.44467 -7.70958 -6.05274 -4.09984 2.93590 3.30390 3.37717 3.42814 3.71792 4.41858 4.58576 4.66943 4.68513 4.91909 5.15346 5.19718 5.29076 5.37975 5.40836 5.42497 5.56524 5.71058 5.85305 5.92733 5.96277 6.01570 6.05144 6.06350 6.14327 6.27922 6.32298 6.33357 6.81809 7.14973 7.45001 7.50471 7.91248 8.20621 8.39562 8.90526 9.22610 9.55663 11.02857 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.036808 B = 0.005262 C = 0.005137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.518544 B = 5319.711476 C = 5449.679692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.583 5.583 3 C 0.258 3.742 4 C -0.528 4.528 5 H 0.059 0.941 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.900 3.100 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.638 3.362 13 O -0.571 6.571 14 O -0.375 6.375 15 C 0.108 3.892 16 C -0.135 4.135 17 C -0.116 4.116 18 C -0.122 4.122 19 C -0.116 4.116 20 C -0.115 4.115 21 H 0.043 0.957 22 H 0.073 0.927 23 H 0.062 0.938 24 H 0.040 0.960 25 H 0.046 0.954 26 H 0.263 0.737 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.509 -16.728 2.652 17.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.323 5.323 3 C 0.140 3.860 4 C -0.567 4.567 5 H 0.077 0.923 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.728 3.272 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.391 3.609 13 O -0.460 6.460 14 O -0.290 6.290 15 C 0.052 3.948 16 C -0.173 4.173 17 C -0.153 4.153 18 C -0.159 4.159 19 C -0.153 4.153 20 C -0.153 4.153 21 H 0.061 0.939 22 H 0.092 0.908 23 H 0.081 0.919 24 H 0.058 0.942 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.103 0.897 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.033 -16.595 2.697 17.550 hybrid contribution 0.248 0.484 -0.939 1.085 sum -4.785 -16.111 1.758 16.898 Atomic orbital electron populations 1.21573 0.80541 1.02675 1.00520 1.47184 1.06552 1.04477 1.74038 1.19374 0.92442 0.76365 0.97789 1.21498 1.36524 1.06388 0.92301 0.92282 1.24931 0.95268 0.96290 0.97576 1.69946 1.38368 1.14379 1.30695 0.86409 0.78076 0.78307 0.84444 1.19789 1.20901 1.20842 1.18156 0.84344 0.81099 0.77293 1.90931 1.12325 1.86433 1.56343 1.86252 1.41118 1.14148 1.87529 1.22486 0.95082 0.80706 0.96567 1.21934 1.00757 0.98022 0.96563 1.21488 0.98871 0.94285 1.00695 1.21593 1.00490 0.98070 0.95782 1.21492 1.00343 0.96441 0.97049 1.21587 0.99229 0.93467 1.00983 0.93851 0.90793 0.91942 0.94240 0.93592 0.92705 0.89748 0.91091 0.91381 0.91597 0.91572 0.91837 0.91885 0.91329 0.91587 0.91040 0.91113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.61 10.44 59.85 0.63 2.24 16 2 N -0.58 -13.42 2.86 -188.80 -0.54 -13.96 16 3 C 0.26 6.94 5.16 -5.20 -0.03 6.91 16 4 C -0.53 -15.27 9.39 -34.44 -0.32 -15.59 16 5 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 7 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 8 Si 0.90 22.04 29.54 -169.99 -5.02 17.01 16 9 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 12 C 0.64 14.74 8.37 54.06 0.45 15.20 16 13 O -0.57 -15.10 15.18 -19.28 -0.29 -15.39 16 14 O -0.38 -7.10 8.71 -40.32 -0.35 -7.46 16 15 C 0.11 1.68 2.46 -26.73 -0.07 1.62 16 16 C -0.13 -1.84 5.56 -26.73 -0.15 -1.99 16 17 C -0.12 -1.24 5.92 -26.73 -0.16 -1.40 16 18 C -0.12 -1.10 5.92 -26.73 -0.16 -1.26 16 19 C -0.12 -1.11 5.92 -26.76 -0.16 -1.27 16 20 C -0.11 -1.38 5.58 -26.75 -0.15 -1.52 16 21 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.07 1.29 8.07 -51.93 -0.42 0.87 16 23 H 0.06 1.00 7.38 -51.93 -0.38 0.62 16 24 H 0.04 1.05 8.07 -51.93 -0.42 0.63 16 25 H 0.05 1.37 7.42 -51.93 -0.39 0.99 16 26 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.08 1.49 7.16 -51.93 -0.37 1.12 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 304.85 15.07 4.59 4.59 Total: -1.00 -32.51 304.85 -7.26 -39.77 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -6.17 Total: -3.21 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: -0.21 Total: 4.60 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: 0.20 Total: -39.92 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.64 Total: -22.85 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.51 -7.26 -39.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704320658.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.554 kcal (2) G-P(sol) polarization free energy of solvation -32.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds