Wall clock time and date at job start Thu Apr 9 2020 12:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00134 * 2 1 4 4 H 1.48497 * 109.47003 * 264.48491 * 3 2 1 5 5 H 1.48500 * 109.46708 * 24.48593 * 3 2 1 6 6 H 1.48500 * 109.46923 * 144.48147 * 3 2 1 7 7 C 1.37884 * 119.99980 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99869 * 335.39070 * 7 2 1 9 9 C 1.50697 * 119.99747 * 155.39189 * 7 2 1 10 10 C 1.53002 * 115.55064 * 300.61189 * 9 7 2 11 11 N 1.46907 * 109.47068 * 282.21596 * 10 9 7 12 12 C 1.46846 * 110.99732 * 308.44701 * 11 10 9 13 13 C 1.53038 * 109.52202 * 174.16315 * 12 11 10 14 14 C 1.53123 * 109.27656 * 59.17866 * 13 12 11 15 15 C 1.53120 * 109.15411 * 302.33873 * 14 13 12 16 16 H 1.09001 * 109.50945 * 297.72609 * 15 14 13 17 17 C 1.52992 * 109.49424 * 177.60806 * 15 14 13 18 18 F 1.39903 * 109.47464 * 65.20285 * 17 15 14 19 19 C 1.46846 * 110.99764 * 184.23710 * 11 10 9 20 20 C 1.52995 * 117.52056 * 86.31840 * 9 7 2 21 21 C 1.52992 * 60.00315 * 107.47628 * 20 9 7 22 22 H 0.97001 * 120.00083 * 5.00628 * 1 2 3 23 23 H 1.08993 * 109.47440 * 162.21308 * 10 9 7 24 24 H 1.08998 * 109.47179 * 42.21215 * 10 9 7 25 25 H 1.09001 * 109.46436 * 294.17445 * 12 11 10 26 26 H 1.08997 * 109.46210 * 54.14719 * 12 11 10 27 27 H 1.08998 * 109.50056 * 179.12030 * 13 12 11 28 28 H 1.08994 * 109.50245 * 299.19971 * 13 12 11 29 29 H 1.09002 * 109.52374 * 62.25256 * 14 13 12 30 30 H 1.09006 * 109.51611 * 182.37972 * 14 13 12 31 31 H 1.09004 * 109.47143 * 185.20545 * 17 15 14 32 32 H 1.08997 * 109.47252 * 305.20290 * 17 15 14 33 33 H 1.08991 * 109.46574 * 305.85785 * 19 11 10 34 34 H 1.09009 * 109.46003 * 65.83435 * 19 11 10 35 35 H 1.09002 * 117.50103 * 214.96794 * 20 9 7 36 36 H 1.09000 * 117.50001 * 359.97438 * 20 9 7 37 37 H 1.09002 * 117.50497 * 252.51197 * 21 20 9 38 38 H 1.09003 * 117.50170 * 107.48746 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6132 1.9791 -1.3936 5 1 1.3932 2.6834 0.5803 6 1 3.4835 1.4766 0.8134 7 6 2.0045 -1.1941 0.0005 8 1 1.5381 -2.0867 0.3904 9 6 3.4089 -1.2536 -0.5429 10 6 3.5677 -0.8405 -2.0075 11 7 3.1277 -1.9400 -2.8769 12 6 3.7837 -3.1999 -2.5046 13 6 3.1962 -4.3461 -3.3312 14 6 3.4105 -4.0575 -4.8197 15 6 2.7592 -2.7169 -5.1704 16 1 1.6850 -2.7772 -4.9952 17 6 3.0200 -2.3923 -6.6426 18 9 2.3741 -3.3351 -7.4496 19 6 3.3595 -1.6180 -4.2907 20 6 4.5525 -0.9138 0.4149 21 6 4.3228 -2.3630 -0.0186 22 1 -0.4850 0.8368 -0.0733 23 1 4.6145 -0.6141 -2.2097 24 1 2.9605 0.0431 -2.2038 25 1 4.8536 -3.1235 -2.6988 26 1 3.6200 -3.3954 -1.4449 27 1 3.6942 -5.2786 -3.0658 28 1 2.1291 -4.4324 -3.1267 29 1 4.4788 -4.0102 -5.0314 30 1 2.9562 -4.8507 -5.4135 31 1 2.6368 -1.3971 -6.8686 32 1 4.0921 -2.4215 -6.8367 33 1 2.8879 -0.6645 -4.5281 34 1 4.4315 -1.5492 -4.4764 35 1 5.4181 -0.3960 0.0017 36 1 4.2893 -0.6468 1.4384 37 1 3.9084 -3.0496 0.7196 38 1 5.0372 -2.7986 -0.7172 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711414642.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:27 Heat of formation + Delta-G solvation = -39.495367 kcal Electronic energy + Delta-G solvation = -18297.992084 eV Core-core repulsion = 15475.712305 eV Total energy + Delta-G solvation = -2822.279778 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.154 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.54619 -40.52158 -38.15261 -34.38606 -34.07386 -32.68684 -28.61999 -27.08509 -26.98010 -23.95998 -23.44725 -22.34926 -20.90580 -20.58041 -18.25051 -16.94501 -16.84954 -16.79252 -16.64360 -15.90737 -15.60520 -15.21991 -15.16309 -14.75248 -14.67519 -14.14269 -13.87753 -13.63564 -13.26795 -12.94928 -12.61388 -12.39122 -12.19396 -12.06578 -12.00821 -11.83475 -11.57651 -11.52776 -11.21608 -11.13702 -10.77029 -10.24690 -10.19105 -8.94733 -8.24951 -6.15862 1.34086 1.41572 1.53552 2.40932 2.79782 3.06712 3.48285 3.69225 3.77446 3.83909 4.06791 4.14656 4.24437 4.33999 4.35525 4.40965 4.47540 4.50743 4.55915 4.69604 4.77264 4.80959 4.85179 4.86300 4.95627 5.07561 5.08667 5.15782 5.22850 5.40306 5.48533 5.51745 5.52414 5.81758 6.32347 6.42898 6.48585 6.81277 7.42392 8.89679 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.027151 B = 0.007424 C = 0.006679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.015761 B = 3770.529427 C = 4191.548078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.033 3.967 3 Si 0.923 3.077 4 H -0.263 1.263 5 H -0.298 1.298 6 H -0.238 1.238 7 C -0.484 4.484 8 H 0.023 0.977 9 C -0.014 4.014 10 C 0.102 3.898 11 N -0.544 5.544 12 C 0.042 3.958 13 C -0.115 4.115 14 C -0.107 4.107 15 C -0.115 4.115 16 H 0.064 0.936 17 C 0.070 3.930 18 F -0.232 7.232 19 C 0.063 3.937 20 C -0.197 4.197 21 C -0.169 4.169 22 H 0.264 0.736 23 H 0.031 0.969 24 H 0.048 0.952 25 H 0.037 0.963 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.046 0.954 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.067 0.933 34 H 0.048 0.952 35 H 0.093 0.907 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.936 -3.871 -11.117 16.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.166 4.166 3 Si 0.747 3.253 4 H -0.188 1.188 5 H -0.225 1.225 6 H -0.161 1.161 7 C -0.521 4.521 8 H 0.041 0.959 9 C -0.016 4.016 10 C -0.025 4.025 11 N -0.269 5.269 12 C -0.085 4.085 13 C -0.153 4.153 14 C -0.145 4.145 15 C -0.134 4.134 16 H 0.083 0.917 17 C 0.015 3.985 18 F -0.213 7.213 19 C -0.065 4.065 20 C -0.235 4.235 21 C -0.206 4.206 22 H 0.073 0.927 23 H 0.049 0.951 24 H 0.066 0.934 25 H 0.055 0.945 26 H 0.106 0.894 27 H 0.102 0.898 28 H 0.065 0.935 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.105 0.895 32 H 0.116 0.884 33 H 0.085 0.915 34 H 0.066 0.934 35 H 0.112 0.888 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 11.253 -3.846 -10.996 16.197 hybrid contribution 0.210 0.916 0.300 0.987 sum 11.463 -2.930 -10.696 15.950 Atomic orbital electron populations 1.70151 1.08652 1.28066 1.50476 1.25640 0.94698 1.02558 0.93711 0.86136 0.80278 0.79164 0.79686 1.18819 1.22493 1.16133 1.20194 0.97029 0.94122 1.40723 0.95891 1.19253 0.90055 1.01371 0.90886 1.21660 0.95941 0.93048 0.91863 1.61568 1.59874 1.03215 1.02222 1.22674 0.94956 0.89240 1.01627 1.21586 1.00870 0.97848 0.94959 1.21573 1.00962 0.96009 0.95946 1.21725 1.01236 0.96375 0.94114 0.91746 1.22085 0.98546 0.90702 0.87173 1.92721 1.84532 1.68769 1.75283 1.21989 0.98848 0.97882 0.87759 1.23236 1.00918 0.99037 1.00303 1.23009 1.03090 0.91122 1.03332 0.92714 0.95072 0.93378 0.94484 0.89403 0.89818 0.93533 0.90539 0.91297 0.89506 0.88438 0.91465 0.93410 0.88827 0.90808 0.90560 0.87390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.65 13.95 21.45 0.30 -58.35 16 2 C 0.03 1.91 5.26 84.66 0.44 2.35 16 3 Si 0.92 43.64 25.77 68.60 1.77 45.41 16 4 H -0.26 -11.75 6.66 99.48 0.66 -11.08 16 5 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 6 H -0.24 -10.39 6.33 99.48 0.63 -9.76 16 7 C -0.48 -27.49 9.29 25.60 0.24 -27.25 16 8 H 0.02 1.48 8.06 -2.91 -0.02 1.45 16 9 C -0.01 -0.65 0.66 -52.93 -0.03 -0.68 16 10 C 0.10 4.16 4.75 86.30 0.41 4.57 16 11 N -0.54 -20.34 4.77 -896.36 -4.27 -24.61 16 12 C 0.04 1.36 3.95 86.33 0.34 1.70 16 13 C -0.11 -3.22 6.09 30.65 0.19 -3.04 16 14 C -0.11 -2.56 5.18 30.68 0.16 -2.40 16 15 C -0.12 -2.99 2.65 -10.74 -0.03 -3.02 16 16 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 17 C 0.07 1.41 6.91 71.98 0.50 1.91 16 18 F -0.23 -5.80 17.09 44.97 0.77 -5.04 16 19 C 0.06 1.83 4.74 86.33 0.41 2.24 16 20 C -0.20 -7.68 8.20 30.59 0.25 -7.43 16 21 C -0.17 -6.31 7.24 30.59 0.22 -6.09 16 22 H 0.26 15.56 8.32 -92.71 -0.77 14.79 16 23 H 0.03 1.10 7.97 -2.39 -0.02 1.08 16 24 H 0.05 2.17 5.78 -2.39 -0.01 2.16 16 25 H 0.04 1.05 7.70 -2.39 -0.02 1.03 16 26 H 0.09 3.21 4.25 -2.39 -0.01 3.20 16 27 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.08 1.53 8.14 -2.39 -0.02 1.52 16 30 H 0.07 1.58 8.01 -2.38 -0.02 1.57 16 31 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.07 1.99 8.12 -2.39 -0.02 1.97 16 34 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 35 H 0.09 3.14 8.10 -2.39 -0.02 3.12 16 36 H 0.07 3.05 8.08 -2.39 -0.02 3.03 16 37 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 38 H 0.11 3.38 6.01 -2.39 -0.01 3.37 16 Total: -1.00 -65.82 292.11 2.55 -63.27 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: 0.90 Total: 16.46 kcal Atomic # 6 Polarization: -40.24 SS G_CDS: 3.09 Total: -37.14 kcal Atomic # 7 Polarization: -78.99 SS G_CDS: -3.97 Total: -82.96 kcal Atomic # 9 Polarization: -5.80 SS G_CDS: 0.77 Total: -5.04 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 1.77 Total: 45.41 kcal Total: -65.82 2.55 -63.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711414642.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.774 kcal (2) G-P(sol) polarization free energy of solvation -65.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds