Wall clock time and date at job start Thu Apr 9 2020 12:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46842 * 110.98939 * 2 1 4 4 C 1.53042 * 109.51342 * 174.14761 * 3 2 1 5 5 C 1.53120 * 109.27645 * 59.18075 * 4 3 2 6 6 C 1.53117 * 109.16172 * 302.34792 * 5 4 3 7 7 C 1.46844 * 110.99990 * 235.79551 * 2 1 3 8 8 H 1.08997 * 109.46515 * 65.83461 * 7 2 1 9 9 C 1.50700 * 109.46003 * 305.85564 * 7 2 1 10 10 O 1.20821 * 120.00485 * 339.97630 * 9 7 2 11 11 O 1.34233 * 119.99946 * 159.98258 * 9 7 2 12 12 C 1.45196 * 117.00244 * 179.97438 * 11 9 7 13 13 C 1.52998 * 109.47149 * 180.02562 * 12 11 9 14 14 C 1.50706 * 109.47348 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99758 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00102 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00217 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47057 * 179.97438 * 18 16 14 20 20 H 1.48500 * 109.47389 * 300.00068 * 18 16 14 21 21 H 1.48504 * 109.47102 * 60.00417 * 18 16 14 22 22 H 1.08996 * 109.47120 * 184.20191 * 1 2 3 23 23 H 1.09001 * 109.47432 * 304.20614 * 1 2 3 24 24 H 1.09004 * 109.46857 * 64.20917 * 1 2 3 25 25 H 1.08996 * 109.46496 * 54.14010 * 3 2 1 26 26 H 1.09001 * 109.47330 * 294.16364 * 3 2 1 27 27 H 1.09006 * 109.50149 * 299.24535 * 4 3 2 28 28 H 1.09002 * 109.50321 * 179.12590 * 4 3 2 29 29 H 1.09002 * 109.52080 * 182.43969 * 5 4 3 30 30 H 1.09003 * 109.52042 * 62.25149 * 5 4 3 31 31 H 1.08992 * 109.50546 * 297.71083 * 6 5 4 32 32 H 1.09007 * 109.53397 * 177.61253 * 6 5 4 33 33 H 1.09000 * 109.47236 * 60.00122 * 12 11 9 34 34 H 1.09002 * 109.47072 * 299.99703 * 12 11 9 35 35 H 1.09001 * 109.47671 * 60.00226 * 13 12 11 36 36 H 1.09006 * 109.47297 * 299.99945 * 13 12 11 37 37 H 0.97001 * 119.99646 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9950 1.3710 0.0000 4 6 3.5179 1.3343 0.1471 5 6 4.1188 0.5370 -1.0139 6 6 3.5181 -0.8714 -1.0205 7 6 1.9953 -0.7707 -1.1338 8 1 1.7327 -0.2706 -2.0660 9 6 1.3982 -2.1543 -1.1207 10 8 0.9186 -2.5958 -0.1034 11 8 1.3992 -2.8963 -2.2393 12 6 0.8078 -4.2195 -2.1531 13 6 0.9013 -4.9096 -3.5154 14 6 0.2869 -6.2829 -3.4262 15 1 -0.1283 -6.6289 -2.4912 16 6 0.2549 -7.0973 -4.5382 17 7 0.7610 -6.6761 -5.6767 18 14 -0.5060 -8.7997 -4.4273 19 1 -0.4165 -9.4690 -5.7499 20 1 0.2245 -9.6036 -3.4147 21 1 -1.9317 -8.6797 -4.0294 22 1 -0.3633 -1.0249 0.0753 23 1 -0.3634 0.5777 0.8499 24 1 -0.3633 0.4471 -0.9253 25 1 1.5631 1.9257 0.8329 26 1 1.7324 1.8609 -0.9376 27 1 3.7809 0.8567 1.0910 28 1 3.9097 2.3513 0.1315 29 1 5.1998 0.4715 -0.8898 30 1 3.8889 1.0355 -1.9556 31 1 3.7811 -1.3836 -0.0950 32 1 3.9100 -1.4308 -1.8700 33 1 -0.2386 -4.1315 -1.8611 34 1 1.3441 -4.8095 -1.4099 35 1 1.9479 -4.9978 -3.8071 36 1 0.3653 -4.3198 -4.2591 37 1 1.1565 -5.7923 -5.7341 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000741144950.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:14:34 Heat of formation + Delta-G solvation = -101.600991 kcal Electronic energy + Delta-G solvation = -17604.248956 eV Core-core repulsion = 14766.903286 eV Total energy + Delta-G solvation = -2837.345670 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.54389 -38.56291 -36.10698 -33.76201 -33.60224 -31.59078 -29.95228 -27.08637 -25.07111 -23.87994 -23.08955 -21.48786 -20.68074 -19.77305 -17.56093 -16.58231 -16.42273 -16.07843 -15.34807 -15.14548 -14.59101 -14.10635 -13.83972 -13.69791 -13.32663 -13.12917 -12.91355 -12.30387 -12.02818 -11.83120 -11.75359 -11.49122 -11.27592 -11.07017 -10.91852 -10.69453 -10.62242 -10.20615 -10.07258 -9.79315 -9.74770 -8.74375 -8.51750 -8.41443 -6.46738 -4.17625 2.48069 2.91754 3.41775 3.43422 3.62261 3.78295 4.48065 4.54292 4.66429 4.69790 4.90072 5.01839 5.15930 5.27290 5.31956 5.32073 5.35905 5.46022 5.52750 5.68179 5.73473 5.86650 5.92460 5.93821 5.96770 6.01092 6.13563 6.47717 6.73022 6.81645 6.92129 7.29499 7.32323 8.00702 8.19870 8.33916 8.75715 9.54987 10.94658 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.049454 B = 0.004369 C = 0.004169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.042632 B = 6407.300110 C = 6714.477885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.524 5.524 3 C 0.057 3.943 4 C -0.120 4.120 5 C -0.119 4.119 6 C -0.109 4.109 7 C 0.095 3.905 8 H 0.073 0.927 9 C 0.458 3.542 10 O -0.497 6.497 11 O -0.361 6.361 12 C 0.083 3.917 13 C 0.012 3.988 14 C -0.608 4.608 15 H 0.053 0.947 16 C 0.020 3.980 17 N -0.907 5.907 18 Si 1.073 2.927 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.286 1.286 22 H 0.087 0.913 23 H 0.072 0.928 24 H 0.024 0.976 25 H 0.080 0.920 26 H 0.035 0.965 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.019 0.981 36 H 0.019 0.981 37 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.475 16.746 9.421 19.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.250 5.250 3 C -0.070 4.070 4 C -0.158 4.158 5 C -0.156 4.156 6 C -0.147 4.147 7 C -0.014 4.014 8 H 0.091 0.909 9 C 0.299 3.701 10 O -0.385 6.385 11 O -0.277 6.277 12 C 0.010 3.990 13 C -0.025 4.025 14 C -0.646 4.646 15 H 0.071 0.929 16 C -0.185 4.185 17 N -0.542 5.542 18 Si 0.901 3.099 19 H -0.206 1.206 20 H -0.213 1.213 21 H -0.213 1.213 22 H 0.105 0.895 23 H 0.090 0.910 24 H 0.042 0.958 25 H 0.098 0.902 26 H 0.053 0.947 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.038 0.962 36 H 0.037 0.963 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.135 14.968 9.245 18.072 hybrid contribution -0.106 1.714 0.297 1.743 sum 4.028 16.683 9.541 19.636 Atomic orbital electron populations 1.22628 0.86449 1.04320 1.00275 1.61671 1.08471 1.13236 1.41645 1.22142 0.95789 0.88270 1.00800 1.21643 0.94273 1.00250 0.99611 1.21579 1.00304 0.94973 0.98758 1.21571 0.90877 0.98328 1.03905 1.21204 0.96523 0.89442 0.94238 0.90942 1.23288 0.76865 0.87909 0.82016 1.90601 1.42282 1.72268 1.33321 1.86507 1.73573 1.30778 1.36832 1.23453 0.96620 0.76776 1.02138 1.19296 0.97818 0.95282 0.90114 1.21831 1.43380 0.99903 0.99462 0.92874 1.25902 0.95775 1.04685 0.92119 1.70779 1.35875 1.21190 1.26376 0.83484 0.76033 0.74408 0.76020 1.20597 1.21253 1.21286 0.89453 0.90967 0.95780 0.90176 0.94666 0.90791 0.91245 0.91000 0.91789 0.90302 0.89998 0.92201 0.92082 0.96225 0.96311 0.91927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.10 60.07 0.55 0.69 16 2 N -0.52 -6.78 4.51 -236.33 -1.07 -7.85 16 3 C 0.06 0.55 5.46 -3.83 -0.02 0.53 16 4 C -0.12 -1.01 6.09 -26.65 -0.16 -1.17 16 5 C -0.12 -1.06 6.00 -26.61 -0.16 -1.22 16 6 C -0.11 -1.29 5.36 -26.65 -0.14 -1.43 16 7 C 0.10 1.33 2.35 -68.88 -0.16 1.17 16 8 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 9 C 0.46 8.32 6.39 36.01 0.23 8.55 16 10 O -0.50 -10.15 14.27 -18.75 -0.27 -10.42 16 11 O -0.36 -7.37 10.22 -39.27 -0.40 -7.77 16 12 C 0.08 1.89 5.40 37.16 0.20 2.09 16 13 C 0.01 0.32 4.66 -27.88 -0.13 0.19 16 14 C -0.61 -17.47 9.11 -34.44 -0.31 -17.78 16 15 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 16 C 0.02 0.57 5.46 -17.82 -0.10 0.47 16 17 N -0.91 -27.68 13.65 55.43 0.76 -26.92 16 18 Si 1.07 25.16 29.90 -169.99 -5.08 20.08 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 22 H 0.09 1.35 5.63 -51.93 -0.29 1.06 16 23 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 24 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.08 0.67 8.08 -51.93 -0.42 0.25 16 26 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 1.36 8.13 -51.93 -0.42 0.94 16 34 H 0.06 1.40 8.13 -51.93 -0.42 0.97 16 35 H 0.02 0.53 8.01 -51.93 -0.42 0.11 16 36 H 0.02 0.51 8.01 -51.93 -0.42 0.09 16 37 H 0.27 8.22 7.22 -40.82 -0.29 7.92 16 LS Contribution 301.61 15.07 4.55 4.55 Total: -1.00 -31.85 301.61 -7.84 -39.69 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -6.11 Total: -3.43 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: -0.21 Total: -7.92 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: -0.31 Total: -34.77 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -0.67 Total: -18.19 kcal Atomic # 14 Polarization: 25.16 SS G_CDS: -5.08 Total: 20.08 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.85 -7.84 -39.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741144950.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.910 kcal (2) G-P(sol) polarization free energy of solvation -31.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds